BMPH_STRPU/1-1 PERRWTD-----------AVIPYEID-----------GNFTGS----------------- CONSENSUS/80% .t.hW........ .....lsahh... .......t.hs........... .... CONSENSUS/65% tphpWpp...... ...t.lsYth... ......psphstt......... .... CONSENSUS/50% spp+Wsp...... ...sslsYpl... ......ssshssp......... .... BMPH_STRPU/1-1 -QRAMFKQ-AMRHWENYT-----------CITFVERN-------------PANSEHDNHI CONSENSUS/80% ..pthhtp.uhp.app.s...........slpF........... .......ttt.hl CONSENSUS/65% ..pphhtp.Ahp.apshT...........slpFpphs....... .......sts.hl CONSENSUS/50% .h+sslpc.AhppWustT...........ClcFscps....... ......ssscspI BMPH_STRPU/1-1 VFTYQA-----------CGCC----------------SFVGRKG---------DGAQAVS CONSENSUS/80% .hht.t............hs.................uhhhh.............tt.hp CONSENSUS/65% thhpts............tsh................uhshtss.........tuptphs CONSENSUS/50% pFssss............GCa...............huasutsu.........sGspcls BMPH_STRPU/1-1 V-------GKNCDKFG--------------------VVVHELGHVVGFW-HEHTRPD--- CONSENSUS/80% ...... .t..s.t.s....................shhHEhhHslGh..Hppth.s... CONSENSUS/65% h..... .tphshths....................shsHElsHuLGhh.Hppscss... CONSENSUS/50% h..... .sstChspu....................llsHElGHALGlh.HspsRsD... BMPH_STRPU/1-1 --RNEFVGI-------------VHQNIV---------PGQEYN----FRVLDA CONSENSUS/80% .....hh...hp........ ...th.h..........p.ht.......as. CONSENSUS/65% .....hhth.hpth...... ..tpaph........tts.hs...h.h.Yus CONSENSUS/50% ..RDpalplsapslp..... ..psFslh.......pccptu...lptsYGu
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |