PPBT_BOVIN KNVIMFLGDGMGVSTVTAARILKGQ-LHHSPGEETKLEMDKFPYVALS-KTYNTNAQVPD CONSENSUS/80% +NlIhhlGDGMGsuploAuR.hpst..ttp.s.-t.hth-pa.hhuhs.+s.sssh.VsD CONSENSUS/65% KNVIlhlGDGMGsuploAuR.hpst.httphu.-phhth-pashsuhs.+ohssshpVsD CONSENSUS/50% KNVIlFIGDGMGVSTlTAARsLKGQ.t+ccsGpEshLshDcFPssALu.KTYcs-tpVTD PPBT_BOVIN SAGTATAYLCGVKANEGTVGVSAATQRSQCNT--TQGNEVTSILRWAKDAGKSVGIVTTT CONSENSUS/80% SAusATAhhsGlKs..sslGlst............ptpcs.olhchApttGhssGlVsTo CONSENSUS/65% SAusATAahsGlKo.psslGlss............pspcstolLEhA+ptG+uTGlVoTo CONSENSUS/50% SAATATAauCGVKTaNGAIGVDAth.hppsp...scG+-VsSVLEtAKcAGKuTGlVTTT PPBT_BOVIN RVNHATPSASYAHSADRDWY----SDNEMPPEALSQ-GCKDIAYQLMYNI--KDIEVIMG CONSENSUS/80% clscATPAuhhAHstsRp......s.sphsspth....p.sIstp.......tchcVlhG CONSENSUS/65% clsHATPAuhhAHsssRph.....spsplsscsht..tptsIstQhh.....pch-VlLG CONSENSUS/50% RIsHATPAAsaAHlssRcWh....sDs-lPs-uhpt.GcsDIAcQLl.....++IDVlLG PPBT_BOVIN GGRKYMFPKNRTDVEY---ELDEKARGTRLDGLNLIDIWKSF-KPKHKHSHYVWNRTDLL CONSENSUS/80% GGtp.hh..st.t...............phcs+sLhpph......pths.phVhs+pphh CONSENSUS/65% GG+p.hh.hsp.s...............chcG+NLhppa......pptuhphVhsRppLh CONSENSUS/50% GGRuaFh.psss-sch.......tptGtRpDGRNLIcEW.t....+ssGYpYVaNRs-Lt PPBT_BOVIN ----ALDPHSVDYLLGLFEP----------------------GDMQYELNRN--NATDPS CONSENSUS/80% p.......p.sp.lLGLFts......................sshthphpRs...st.Po CONSENSUS/65% p......sppsp.lLGLFts......................sshphplsRs...sspPS CONSENSUS/50% s....hssssscpLLGLFcs......................uclsYclcR-..tus-PS PPBT_BOVIN LSEMVEMAIRILNKN-------PKGFFLLVEGGRIDHGHHEGKAKQALHEAVEMDQAIGQ CONSENSUS/80% Lt-hTchAlphLp+........tpGFFLhVEGupIDautHpstshttlpEshthDpAhpt CONSENSUS/65% LtEMTcsAlclLs+t.......pcGFFLhVEGupID+utHpspshtAlpEsltFDpAlpt CONSENSUS/50% LuEMT-sAIclLsKs......ss+GFFLhVEGGRIDHuHH-NcAsuALcEsl-FDcAlcs PPBT_BOVIN AGAMTS--VEDTLTVVTADHSHVFTFGGYTPRGN-SIFGLAPM----VSDTDKKPFTAIL CONSENSUS/80% Ahphsp..cpcTLllsTADHspsh...uh...h....hhh.s.......sscths.h.hh CONSENSUS/65% Al-hsc..-ccTLllsTADHoHsh.h.Ghs.pt....hhhsP.......sscptshh.ht CONSENSUS/50% Al-aAcp.---TLVlVTADHSHuhohsGYssRGs.slaGlAP.....hhcuc+sPaoslu PPBT_BOVIN YGNGPGYKV----------------VGGERENV--SMVDYAHNNYQAQSAVPLRHET--- CONSENSUS/80% ht.ssGh.h..................h....h..p..p.tt.pattpt..shctpp... CONSENSUS/65% hssusGhhh..................h....l..o..-httspYttpss.shcppp... CONSENSUS/50% YsNGPGssl...............pssutcsslt.TptEhsuscYssposVPpDsET... PPBT_BOVIN -------------------------HGGEDVAVFAKGPMA-------HLLHGVQEQNYIP CONSENSUS/80% .........................HsGp-VslaAhGPht.......phhpGh.-ps.ls CONSENSUS/65% .........................HsG-DVsVaAhGPtu.......phhpGlh-pT.ls CONSENSUS/50% .........................HoGEDVsVFAaGPpA.......cpl+GlpEQTalA PPBT_BOVIN HVMAYAACIG CONSENSUS/80% thhthshtht CONSENSUS/65% pshthAhshs CONSENSUS/50% +lMsaALsls
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |