Consensus terms for the cNMP domain

atpotchan_       LFKGFPEGLLVQLVSQIQA-------EYFPPKMEIILQNEIPTDFYVIVSGGVDIIAS--
CONSENSUS/80%    hhtth....h.th.t.ht..........h..sphlhhpsp.spthahl.pGthphhh...
CONSENSUS/65%    hhpshsttthtplhsthp........hhhtsuphlhtpG-.usphahlhpGplclhp...
CONSENSUS/50%    lhpsLsssplpplssshcs.......ppassG-sllcpGDsucshYlltsGplclhpt..


atpotchan_       ----------KGVSEQVLAKLGPGSMAGEIGVV--------------------FNIPQPF
CONSENSUS/80%    ..............t.hhthht.sphhG..shh........................t.h
CONSENSUS/65%    ...........tstpthlshhttGshFGchulh.....................tpstsh
CONSENSUS/50%    ..........tsspcpllstlssG-hFGElull....................pssspss


atpotchan_       TVRTR-RLSQVIRIGHHKFKEMVQSDNDVDAKMIIANF
CONSENSUS/80%    th.s..t.hth.h.thtthh..h.....h....h..h.
CONSENSUS/65%    sstsh.phspl.phshpphhthhtph.phhhthhtphh
CONSENSUS/50%    sspsp.shsplsphshpchhptlsspsptttpphpphs

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T