atpotchan_ LFKGFPEGLLVQLVSQIQA-------EYFPPKMEIILQNEIPTDFYVIVSGGVDIIAS-- CONSENSUS/80% hhtth....h.th.t.ht..........h..sphlhhpsp.spthahl.pGthphhh... CONSENSUS/65% hhpshsttthtplhsthp........hhhtsuphlhtpG-.usphahlhpGplclhp... CONSENSUS/50% lhpsLsssplpplssshcs.......ppassG-sllcpGDsucshYlltsGplclhpt.. atpotchan_ ----------KGVSEQVLAKLGPGSMAGEIGVV--------------------FNIPQPF CONSENSUS/80% ..............t.hhthht.sphhG..shh........................t.h CONSENSUS/65% ...........tstpthlshhttGshFGchulh.....................tpstsh CONSENSUS/50% ..........tsspcpllstlssG-hFGElull....................pssspss atpotchan_ TVRTR-RLSQVIRIGHHKFKEMVQSDNDVDAKMIIANF CONSENSUS/80% th.s..t.hth.h.thtthh..h.....h....h..h. CONSENSUS/65% sstsh.phspl.phshpphhthhtph.phhhthhtphh CONSENSUS/50% sspsp.shsplsphshpchhptlsspsptttpphpphs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |