O42133/365-523 -KWNTRLYDGSWR-RGS--------TAGGCRNYPATFWINPQFKICLEEVDDDGDDFGGR CONSENSUS/80% ..h..t.hpGpWh.hs.........sAGGCts..ssa..NPQa.hpl.p.s......... CONSENSUS/65% .pWphphhpGpWs.+ss........oAGGCpN..sTahpNPQahlplpcssp........ CONSENSUS/50% .pWpppthpGsWs.RGs........TAGGC+Na.sTFasNPQFclplp-sD-s.pt.... O42133/365-523 EP-------------------GCSFLLALMQKHRRRERR--------------------- CONSENSUS/80% ........................hhhulhQc.hpp.h...................... CONSENSUS/65% .......................slllulhQ+p+Rp.tp..................... CONSENSUS/50% ......................CoVllALhQKsRRct+p..................... O42133/365-523 YGK-DMETIGFAVYEVPPEHVGHSGVHLQRDFFLSNASRARSEQFINLREVSTRL-RLPP CONSENSUS/80% .s..p..slGhtlhph.tp.............h...t.hstot.ahshRpl..ph.plss CONSENSUS/65% .Gt.phhsIGhtlaplspp.......t.ttthhh.ttshupStsahshRElst+h.cLPs CONSENSUS/50% hGt.-hhoIGFslYcVscc.....t.+lppsahhtpsspAcSssalNsREVosRh.+LPP O42133/365-523 GE--YIVVPSTFEPNREGDFVLRVFSEKRADTE CONSENSUS/80% Gp..YlllPoTatstppupFhLRlaoph.hp.p CONSENSUS/65% Gp..YllVPSTF-Psppu-FhLRVFoptphphp CONSENSUS/50% Gc..YlIVPSTF-Psc-u-FlLRVFScspsssp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |