IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 ---------------------------------------------------MCCTA-NQC CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% .................................................htplhpt...h IS1294_Y2 WTSF-LD-------------AG---G----L-----RDIEVEAVTKMLACRT-------- CONSENSUS/80% ............................................................ CONSENSUS/65% ...........................................h.th..Ct......... CONSENSUS/50% ...h................t....t....l.....p...hcshpthhtCtT........ IS1294_Y2 -------R-ILG----------VKE-----F--GCDNPDCQ----------HV-K---YL CONSENSUS/80% ............................................................ CONSENSUS/65% ...........G..........h...........C....C.................... CONSENSUS/50% .......t.hhG..........hp.........tCp..pCs..........ch.c...hh IS1294_Y2 ---TNS---CGS-R-ACP-----S------CGKKATDLWTA------------------- CONSENSUS/80% ............................................................ CONSENSUS/65% .....p...Ctp.R..Cs.....t......Cthhttt.Wht................... CONSENSUS/50% ...h.o...C+s.R.tCP.....p......CttpsstpWlt................... IS1294_Y2 ---------TQLNR-LPDC-D--WVH-------------LVFTL-P-DTLWPV-FESN-- CONSENSUS/80% ....................................................h.h..... CONSENSUS/65% ............ph.ls.s....a.H.............lVFTl.P.tthh.l.hht... CONSENSUS/50% .........hthpl.LP.s.s..ahH.............lVFTL.P.pplhsl.hhps.. IS1294_Y2 -------RWLLNDVCRL----------A------------VE--NLLY----AARK---- CONSENSUS/80% .........hht.h.t.........................t...h.............. CONSENSUS/65% .......thlhs.h.ch..........s............sp..slht............ CONSENSUS/50% .......+hlhshlh+h..........A............u-..slhp..h.stp..... IS1294_Y2 ---------------------------R-G----LEPGI-FCAIH---------TYGR-- CONSENSUS/80% .....................................Gh.h.hlp..........asp.. CONSENSUS/65% ...........................h.......p.Gh.hsslH.........paGp.. CONSENSUS/50% ...........................h.u...s.csGh.hsllH.........TaGp.. IS1294_Y2 ------------R-LNW---H-----PHV-H----V-SVT---------------CGGLN CONSENSUS/80% ............t.......p......H..H h..h.................usht CONSENSUS/65% ............t.hph...H.....PHh.H h..ss...............sGGls CONSENSUS/50% ............s.Lsa...H.....PHl.H h.lVs...............uGGls IS1294_Y2 KH-----------------GQWKKL--------------------SFLK----------D CONSENSUS/80% ..............................................h............. CONSENSUS/65% ......t............t.Wh......................hh..h.........c CONSENSUS/50% ......st...........ppWct.....................aFh.s.........+ IS1294_Y2 AMRSRWMW--------NMRQLLL--KA-WSE-G---M----AMPESLS----HITT---E CONSENSUS/80% .h.thh.h.........hht.h...t.................................. CONSENSUS/65% hltphaph........thhphLt..pt.h.t.....h....................... CONSENSUS/50% slpphaRt........phhphLp..ct.asp.t...L....sh.tt.......hhp.... IS1294_Y2 -------------------------------------SQWRSL-------V----LKSGG CONSENSUS/80% ............................................................ CONSENSUS/65% .........................................th.......hh...ht... CONSENSUS/50% .........................................ph..h..tshhp..pt... IS1294_Y2 KYWH----VYMSKKTA-------------GGRN-TARY----LGRYLKKPPIAA-----S CONSENSUS/80% ..a.....h.ht..h..............s.....h.h....hspYhh+.sls......t CONSENSUS/65% ..W.....V.hp..ht.............stts..htY....lu+Yh++ssls......p CONSENSUS/50% ..Ws....Vasppshs............suppl..lpY....LGRYh++ssIus.....u IS1294_Y2 RL-----AHYN------GGASLSF----------------------------RYL--D-- CONSENSUS/80% pl...................l.h.............................h...p.. CONSENSUS/65% Rl......ths........tplsh............................pap..s.. CONSENSUS/50% RL.....tphs.....t.tsplsF............................+Yp..D.. IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% .hpp.................................hht.......s.-ah........ CONSENSUS/50% .a+s...........................ph...hphs.......spEFl........ IS1294_Y2 ----------------------------HKTGETATETLTQRELVARLK--Q------HI CONSENSUS/80% ..............................................hh..........hh CONSENSUS/65% .......................t......................Rhh.........Hl CONSENSUS/50% .......................c......................Rah.........HV IS1294_Y2 PE-KFFKMVRYFGFLANRVCGE--KLPQVYRALG-------MDKPE-------------- CONSENSUS/80% ............................................................ CONSENSUS/65% ...ptaphlRaaGhhust.pt....h...h.hht.......................... CONSENSUS/50% hs.+sF+hlRaYGhLussp+pt..pl..hhthls.......h.................. IS1294_Y2 -----------------------------------------------------PGRKCA- CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ..........................................................th IS1294_Y2 -MHKWM----------------------VKQFLS-RDP---------------------- CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% .t.............................hht.hss...................... IS1294_Y2 ---FE---------C-----------V--L-CG------------CR-MVYRRA-I---- CONSENSUS/80% ............................................................ CONSENSUS/65% ..............C................Ct............t..hhh......... CONSENSUS/50% ...ht.........C...........s..h.Cu............u..hhh....h.... IS1294_Y2 -------AG----LNVSG---------L--K-----------KNARDIS----------- CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% .......ht......h.t.......................................... IS1294_Y2 -------------------------------LLRYMPA---------------------- CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ IS1294_Y2 -------------------------------------------- CONSENSUS/80% ............................................ CONSENSUS/65% ............................................ CONSENSUS/50% ............................................
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |