5833.PFD0215c_from_181_to_306KIKG-CDFGDNIPSK----------------------------------------RDLTN CONSENSUS/80% hh.s.CsF.tt................................................. CONSENSUS/65% clhG.CDFssp.tph............................................. CONSENSUS/50% KIpG.CDFssspsph.........................................s.sh 5833.PFD0215c_from_181_to_306SLSLNERSSC------IIHAYSN-------------------------DVLGINCFKKEI CONSENSUS/80% .h.....p.p.......hphp...........................phhsh.Cs.... CONSENSUS/65% .hp.sppptpp......Cslpsp.........................chlGhhCP.... CONSENSUS/50% phssscsssss.....hCslpsptt.......................-llGlpCP.... 5833.PFD0215c_from_181_to_306N--------------------NSYNNNLELNPSNCFHDVYFGADL--------------- CONSENSUS/80% .............................h.s.tCFpphh.................... CONSENSUS/65% ..........................phplpPpsCFcplhhp.................. CONSENSUS/50% .........................sshplpPssCFcsVahp.................. 5833.PFD0215c_from_181_to_306----ILNSKNVIPN---------------SRVIPDPSSD-VKLSRNHSFSSYLI------ CONSENSUS/80% .........p.....................h............t......hh....... CONSENSUS/65% ........pph.ph.................lhpth.hhphpt.sp..hs.hhp...... CONSENSUS/50% ........pclppl................pllsssphhppcppsstptssalp...... 5833.PFD0215c_from_181_to_306---LPNNLTENIKISCTCKRDE CONSENSUS/80% .......h.pph.h.C.C..tp CONSENSUS/65% ...h..thtpphph.ChCppsp CONSENSUS/50% ...lssphpsslsFpCpCpssp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |