rras_mouse -ETHKLVVVGGGGVGKSALTIQFIQS----YFVSDYDPTIEDSYTKICTVDGIP-ARLDI CONSENSUS/80% ..paKlVllGsGGVGKSulTlQhlpt hFlppYDPTIEDoYpKph.lDsp..shL-I CONSENSUS/65% .ppYKlVllGuGGVGKSALTlQFlQs pFl-cYDPTIEDSYRKpsplDscs.shLDI CONSENSUS/50% .c-YKLVVlGuGGVGKSALTIQFlQu pFV--YDPTIEDSYRKQlsIDscs.shLDI rras_mouse LDTAGQEEFGAMREQYMRAGNGFLLVFAIND-RQSFNEVGKLFTQILRVKDR-------- CONSENSUS/80% LDTAGpcpaoAMR-.Yh+sGpGFllVaulss ppSFpcltthppplhRV+cp........ CONSENSUS/65% LDTAGQEEaoAMR-pYhRsGpGFllVYSlTs +pSFc-lpph+pQIlRVKDp........ CONSENSUS/50% LDTAGQEEFSAMR-QYMRoGcGFLLVYSITs RpSF-Elpsa+-QILRVKDp........ rras_mouse -----------DDFPIVLVGNKADLENQ-RQVLR-SEASSFSASHH-------------- CONSENSUS/80% ...........pphPhllVGNKsDLpp..R.Vst.p-uppLAppht.............. CONSENSUS/65% ...........-phPhlLVGNKsDLcpp.RpVop.pEGppLApphs.............. CONSENSUS/50% ...........-clPlVLVGNKsDLEsc.RpVSs.cEGccLAcpas.............. rras_mouse -----------------MTYFEASAKLRLNVDEAFEQLVRAVRKY CONSENSUS/80% .................s.ahEsSAK.p.slpcsFhpll+tlpt. CONSENSUS/65% .................ssFhEoSAKt+hNV--sFapLVRpl++. CONSENSUS/50% .................ssFlETSAKpRhNV--AFacLVRcIR+p ------------------------------------------------------------------------------- rho2_yeast LVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDSRV------------------- CONSENSUS/80% hVlVGDGusGKTslLhsaspstFPptYlPTVF-Nasssh.h................... CONSENSUS/65% hVlVGDGulGKTsLLlsaopstFPppYlPTVF-NYssslhh................... CONSENSUS/50% lVVVGDGAVGKTCLLIsYTsssFPc-YVPTVFENYsuslpl................... rho2_yeast -----------DGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINART CONSENSUS/80% ...........ssp.lpLsLWDTAGQE-Y-pLRPLSYspsslhLlCFulss.sShpNltp CONSENSUS/65% ...........-sc.lpLuLWDTAGQE-YDRLRPLSYPpoDVhLlCFSlss.sSh-Nlpp CONSENSUS/50% ...........Du+slpLuLWDTAGQEDYDRLRPLSYPsoDVFLlCFSVsoPsSF-NVpc rho2_yeast KWADEALRYCPDAPIVLVGLKKDLR-----QEAHFKENAT-DEMVPIEDAKQ-------- CONSENSUS/80% KWhsElpcasstsshlLVGs+hDhR .......t.htphpt.t...hp............ CONSENSUS/65% KWhPElp+asPssPhlLVGsKhDLR ....tc.pslpplpppp.pPlo.ppu.t...... CONSENSUS/50% KWhPEVpHaCPssPllLVGTKtDLR ....sDpsslccLpcpcppPlTsppGpt...... rho2_yeast ---------------VARAIGAKKYMECSALTGEG-VDDVFEVATRTSLLM CONSENSUS/80% ............hsppltAhtYhECSAhppps.lpplFptAhhhsh.. CONSENSUS/65% ............hA+cItAhpYlECSAhTpps.lcpVFctAlcsslp. CONSENSUS/50% ............lAKcIGAhpYlECSALTpcG.l+pVF-cAl+usLps ------------------------------------------------------------------------------- P28746 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL CONSENSUS/80% VGDGGTGKTTFVKRHLTGEFEKKY.sTlGVEVHPLsFaTNpG.I+F.sWDTAGQEKFGGL CONSENSUS/65% VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGpIRFNVWDTAGQEKFGGL CONSENSUS/50% VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGpIRFNVWDTAGQEKFGGL P28746 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS CONSENSUS/80% RDGYYIpuQCAIIMFDVTuRlTYKNVPsWHRDLsRVCENIPIVLCGNKVDlKsRpVKAKp CONSENSUS/65% RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLsRVCENIPIVLCGNKVDVKDRKVKAKo CONSENSUS/50% RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLsRVCENIPIVLCGNKVDVKDRKVKAKo P28746 IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA CONSENSUS/80% lsFHRKKNLQYY-ISAKSNYNFEKPFLaLARKLhGD.NLcFVt.PALAPPEV.hD.Ah.s CONSENSUS/65% ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLlGDPNLEFVAMPALAPPEVpMDPAhtA CONSENSUS/50% ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLlGDPNLEFVAMPALAPPEVpMDPAhtA P28746 QYEHDLEVAQTTALPD-EDDDL- CONSENSUS/80% p.EtDLtsAtttsLPD.-DDsh. CONSENSUS/65% cYE+DL-sAAsssLPD.DDDDL. CONSENSUS/50% cYE+DL-sAAsssLPD.DDDDL. ------------------------------------------------------------------------------- HSU237H1_1-177 LKFLLVGDRDVGKSEILESLQDGTAESPYS-HLGGIDYKTTTILL----------DGQRV CONSENSUS/80% hKllllG-suVGKoslh.paspspF..p...sTlGl-Ft.+.lph..........psphl CONSENSUS/65% aKlllIGDSGVGKosLltRFscspFstp.t.sTIGV-Fts+plpl..........cu+pl CONSENSUS/50% FKlllIGDSGVGKSsLLsRFscscFssppp.uTIGVDFpsKslpl..........-GKcV HSU237H1_1-177 KLKLWDTSGQGRFC-TIFRSYSRGAQGVILVYDIANRWSFEGMDR-WIKKIEEHAPG--- CONSENSUS/80% +hQlWDTAGQERap.slstuYYRsA.uhlllYDlopttoFppltp.Whp-hp.hss.... CONSENSUS/65% KlQIWDTAGQERFR.olTsuYYRGAhGsllVYDlTpcpoFpslpp.Wlc-lcpauss... CONSENSUS/50% KLQIWDTAGQERFR.olTsuYYRGAsGslLVYDITc+sSF-slpp.WlcElcpauss... HSU237H1_1-177 --VPKILVGNRLHLAF----KRQVPREQAQAY-------------AERLGVTFF-EVSPL CONSENSUS/80% .sh.hhLlGNK.Dhtp ...+tVs.pputth.............upp.th.ah.EsSAh CONSENSUS/65% .shshhLlGNKsDlpp ..pRtVsp--upth.............Acctsh.ah.ETSAp CONSENSUS/50% .sllllLVGNKsDLcc ..pRsVopEEAppa.............AccpulhFh.ETSAK HSU237H1_1-177 CNFNIIE---SFTELARIVLLR CONSENSUS/80% ps.sVpp...sF.tlhpplht. CONSENSUS/65% sshNVpp...uFpplspclhpt CONSENSUS/50% supNV-p...AFpplsccIhpp ------------------------------------------------------------------------------- sar1_yeast FGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN CONSENSUS/80% hsWFhshLA.LGLhpKcuKhLFLGLDNAGKTTLLHMLKs-RLs.hQPT.HPTSEELuIGp CONSENSUS/65% FsWFYDlLASLGLWNKHAKlLFLGLDNAGKTTLLHMLKNDRLAshQPThHPTSEELAIGN CONSENSUS/50% FsWFYDlLASLGLWNKHAKlLFLGLDNAGKTTLLHMLKNDRLAshQPThHPTSEELAIGN sar1_yeast IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE--RFDEARVELDALFNIAELKD CONSENSUS/80% l+FpsFDLGGH..ARRlW+DYascVsulVaLVDshD.E RhsEu+hELDALhs.ttLtp CONSENSUS/65% IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAsDhE RFuESKsELDALLuhEELAc CONSENSUS/50% IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAsDhE RFuESKsELDALLuhEELAc sar1_yeast VPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEG-----QRPV----------EVF CONSENSUS/80% VPFlILGNKIDhP.AhSEsEL+.tLGLhphT.............+sl..........EVF CONSENSUS/65% VPFLILGNKIDAPsAlSEDELRuALGLhNTTsupth.s.....sRPV..........EVF CONSENSUS/50% VPFLILGNKIDAPsAlSEDELRuALGLhNTTsupth.s.....sRPV..........EVF sar1_yeast MCSVVMRNGYLEAFQWLSQYI---- CONSENSUS/80% MCSlVh+.GYhEuFpWLuQYl. CONSENSUS/65% MCSVVhRpGYGEGFKWLSQYI. CONSENSUS/50% MCSVVhRpGYGEGFKWLSQYI. ------------------------------------------------------------------------------- arf6_chick ----MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN CONSENSUS/80% ....huplhptlFGpKEMRILMlGLDuAGKTTlLYKLKLGp.lTTIPTlGFNVETVpYKN CONSENSUS/65% MG.hhuKLFSsLFGNKEMRILMVGLDAAGKTTILYKLKLGElVTTIPTIGFNVETVpYKN CONSENSUS/50% MG.hhuKLFSsLFGNKEMRILMVGLDAAGKTTILYKLKLGElVTTIPTIGFNVETVpYKN arf6_chick VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRD CONSENSUS/80% lpFsVWDVGGQD+IRsLWRHYapsTpGlIFVlDssDRp RlsEARp.h.Rhls-cEhRs CONSENSUS/65% ISFTVWDVGGQDKIRPLWRHYYpNTQGLIFVVDSNDR- RIsEAREELpRMLNEDELRD CONSENSUS/50% ISFTVWDVGGQDKIRPLWRHYYpNTQGLIFVVDSNDR- RIsEAREELpRMLNEDELRD arf6_chick AIILIFANKQDLPDAMKPHEIQEKLGLTRIR------------DRNW----------YVQ CONSENSUS/80% AlhLlFANKQDLPpAMpstEIp-KLGLpplR pRsW alQ CONSENSUS/65% AVlLVFANKQDLP-AMsAAEITEKLGLHSIR cRNW YIQ CONSENSUS/50% AVlLVFANKQDLP-AMsAAEITEKLGLHSIR cRNW YIQ arf6_chick PSCATTGDGLYEGLTWLTSNYKS-- CONSENSUS/80% soCAToG-GLYEGLpWLosph+s.. CONSENSUS/65% uTCATSGDGLYEGL-WLSNNLKNQp CONSENSUS/50% uTCATSGDGLYEGL-WLSNNLKNQp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |