7227.CG18555-PA_from_4_to_79KCRVCLASSK-----------------NMVNIFEER-QDLPV------------------ CONSENSUS/80% hCRhCh.........................h............................ CONSENSUS/65% hCRlChp....................th.shhtt......................... CONSENSUS/50% hCRlChspt..................phhslhspt........................ 7227.CG18555-PA_from_4_to_79--------SIAHMIIECTG----------------FKVE-KG--------------DSLP CONSENSUS/80% .........h.phh.....................h.h.....................s CONSENSUS/65% .........lhphl.thht................lplp.pp................hs CONSENSUS/50% .........lschltphss................lplstsst...............hP 7227.CG18555-PA_from_4_to_79HSICPP-CVKDAHN-AFTI--IKTY-------ERSYQVF CONSENSUS/80% ..lC.t.Cht.lt..hhpaht.h.p.......pt.h.t. CONSENSUS/65% phlCtp.Chpplpp.hhpFtppshps......pphhpph CONSENSUS/50% ppICss.ChppLcp.hapF+ppspcs......cptLppt
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |