cov pid 1 [ . . . . : . . . 80 1 6239.C13D9.4_from_19_to_274 100.0% 100.0% LFFGAIGNVLFIHLTFKRKSLQTRTSALQCVQCVFHIICQVGTMFDGNIT-LGN-------------------------- 2 6239.C13D9.5_from_19_to_274 100.0% 44.9% FVIGIVGNSLFIHLIFKKQKLRSRSTLLQCVQCAFQNLCLVGTILVSALT-FIT-------------------------- 3 6239.F26G5.10_from_19_to_274 100.0% 58.2% IVFGTIGNSLFIHLIFKRKQLQTRTSVLQCFQCSFQTFCLFGTLFDGIIN-LGH-------------------------- 4 6239.F07B10.6_from_19_to_277 99.2% 16.9% AIVGVVGNGIMILVFLKESKFKLPVNYLITLNCLADLFHVSGHFVFNYQLFNDD-------------------------- 5 6239.Y97E10B.3_from_21_to_277 100.0% 37.7% LFFGVFGNASLIYLIARRKKLQTKSSILQAIQCLCHIICLIGTQVDTVLTILDI-------------------------- 6 6239.C13D9.6_from_19_to_274 100.0% 46.1% LFIGTIGNCLFIHLIFKVKQLRSRSSLLQSAQCVFQTLCLFGTSLCALLT-LKL-------------------------- 7 6239.Y97E10B.9_from_21_to_277 100.0% 28.4% NVLGLFGNINFLCLTYIKPALRSKSYYIQCALSVSHIFCLLFELPNAVLLFTGI-------------------------- 8 6239.F58D7.1_from_20_to_289 99.2% 19.5% CVIGLFGNVNLIIATCRHKSLRTKMGCLIMISTIAHTICLVSELICVKLKLRFT-------------------------- 9 6239.T19B10.10_from_19_to_276 98.8% 15.7% ALVSMAGNIVMVVCFLKERKFNSPCHYLITLTCIADMLHLCGHFVFNFQLFYQG-------------------------- 10 6239.F26G5.12_from_19_to_274 100.0% 51.2% ITFGTIGNLLFIHLNFRRKQLRSRTSVLQCFQCAFHIFCLFGSIFEGALN-FMN-------------------------- 11 6238.CBG08634_from_19_to_273 98.8% 49.2% LVLGFIGNSLFIHLIYRRKQLQSRTSILQCVQCIFHLLCQIGTVVSGVLD-VGT-------------------------- 12 6239.M01B2.7_from_16_to_269 97.3% 16.5% FIVGFTGNLLMVLVTLHSNKLRSICNILICVCCFCDLLLFTDVIAFVVSMFT---------------------------- 13 6239.C51E3.5_from_20_to_275 98.0% 17.6% IPVGIFSNVIMIICFFVNPRLRSPFHILLTLTCLADGIHVCGQIIFVFQMLTNT-------------------------- 14 135651.CBN00346_from_22_to_292 100.0% 28.0% NIFGLFGNFNLIYLTATKSKLKSKSSYLQCALCFSHIFCLLFELLNAGLLFTGI-------------------------- 15 281687.CJA00050_from_22_to_278 100.0% 33.1% NIFGVFGNVNFIVLTMKNKSLKSNSSYLQCALCFCHIICLLFELPNAGLSFSGV-------------------------- 16 31234.CRE30968_from_20_to_321 98.4% 14.7% SVIGIAGNFVMLMCSFRTKRFRSPCYILITVTCLADAIHISGQFPFCVHLFGNLLDSFWVLTQLENIFGIHRISVSDINF 17 6239.M01B2.9_from_16_to_272 97.3% 16.3% FVVGTTGNLIMVMVTFYCKNLRSICNILIGFCCFCDLLLFTNIIAFMISMFM---------------------------- 18 6239.Y62E10A.4a_from_20_to_282 97.7% 20.4% SIIGLIGNMTIVLATVISKRLQSRCNILIGLLALSDVVVCTYLIHLRVLMFLDMY------------------------- 19 135651.CBN26010_from_19_to_274 99.6% 57.2% LVFGTVGNTLFIHLIIRKKQLQSRTSILQCFQCFFHLFCQFGPIMDGVFD-IGS-------------------------- 20 135651.CBN23690_from_19_to_274 100.0% 50.8% FIFGTVGNVLFIHLIYKKKQLRSRSSILQCAQCVFHIICLFGTVVDSFFI-FDS-------------------------- 21 31234.CRE30970_from_17_to_275 99.2% 15.3% STIGVIGNTIMILCCAITKRLRSPCHFLISLTCLIDAFHISGQYPFIYQFFTGF-------------------------- 22 6238.CBG19119_from_20_to_291 98.4% 13.8% AIVSCIGNSIMIILFIKERNFHSPCHYMITFGCLADMLHLCGHFVFNYHIFADV-------------------------- 23 6238.CBG09532_from_20_to_295 98.4% 15.4% SFIGVVGNAIMLICFFKNKRLRSPCHILISLTCISDLLHLCAQFVYCVHLFGNS-------------------------- 24 135651.CBN29283_from_14_to_296 96.5% 16.1% MVLGAFGNLNVILAVARKKVLRTKGAMLVFVLAISHFICNISELKVLIFRLRFQ-------------------------- 25 6238.CBG08636_from_19_to_274 100.0% 47.7% FVLGITGNLLFIHLIYKKRRLRTRSSLLQCAQCAFHIVCLFGTVLGGFMM-DPS-------------------------- 26 6238.CBG08632_from_19_to_276 100.0% 50.8% LVVGIIGNVLFIHLVFKRKQLQSRTSILQCVQAGFHIICQTGPVMSGVFD-MGA-------------------------- 27 31234.CRE30966_from_56_to_346 100.0% 16.2% IPIGVFSNAVMIICFFVNPRLRSPFHILLTLTCLADGIHVCGQIVFVIQLLTNS-------------------------- 28 31234.CRE30969_from_20_to_282 91.0% 14.7% SVIGVIGNTIMVFCTIRTKRFRSPCHLLICATCVADLLHVCGQFPFCVHLFGNR--------------------KLKFSF 29 135651.CBN17450_from_19_to_275 100.0% 51.0% FIFGTIGNVLFIHMIIRKKQLQSRTSILQCFQCFFHLFCQLGTVSTGVFE-ERN-------------------------- 30 6238.CBG27007_from_22_to_278 100.0% 33.9% FVIGIFGNSCFIFLVCRNKQLRSKSSYLQSIQCFFHIICLLGTMVDVGLAIPDI-------------------------- 31 31234.CRE05430_from_14_to_320 100.0% 16.6% MLLGAFGNLNVIVAVARKKVLRTKGAMLVFVLAISHFICNVSELKVLIFRLRFQ-------------------------- 32 6238.CBG08631_from_21_to_242 86.3% 35.8% FFAGIFGNACLIYMIAKKKTLQTKSSILQAVQSFCHIICLAGTQVDTVLTILDI-------------------------- 33 31234.CRE27496_from_726_to_974 96.9% 45.5% LILSVILSLLIHIFIF--------TALLQCAQCAFHVVCLFGTVLDAFIIEIDS-------------------------- 34 135651.CBN29047_from_20_to_240 85.2% 15.8% STIGVIGNSIMISCCFKTKRLRSPCHFLISLTCLIDAFHISGQFPFIYQFFTGF-------------------------- 35 6238.CBG09288_from_19_to_302 98.4% 17.4% CCIGLFGNINLIVATCRHKSLRTKLGCLLMISTISHTICLVSELISVKLKLRYF-------------------------- 36 135651.CBN23941_from_21_to_237 84.4% 26.1% NILGLFGNANILLLTYFKPQLRSKTSYIQCALSISHIICLLFELPNAVFLFTGI-------------------------- 37 31234.CRE14827_from_14_to_284 97.3% 15.8% MAFGIFGNVNVIVAICRKKVLRTKGAMFVMILAIAHLVCNVSEVIGLILQFRFR-------------------------- 38 31234.CRE18778_from_17_to_272 99.6% 26.5% ICFGIFGNIHLVFIILSTPSFRSKSSYLQCIQSTAHIFCIMNSFIDVYLMITDT-------------------------- 39 31234.CRE13437_from_22_to_286 99.2% 22.1% EVFGLFGNINLVVLTIRKKSLRTKYGCILATLATIHTLCLLYELVDMSFSIAATFYSY---------------------- 40 6239.C03G6.16_from_18_to_279 96.9% 14.4% AIIGILGNFTIILITITNKCLHSRCYILIALMACFNFVYCIYAAQLRVMILINES------------------------- 41 6239.C39H7.9a_from_22_to_286 99.2% 20.6% EILGLFGNINLIAVILRNKVLRSNFGLIMLCLAFFHTVCLFFELINMGFGILATFYSY---------------------- 42 6238.CBG19386_from_18_to_280 99.2% 17.7% AIVGIFGNVNIICATFQNKTLQHKCGVMLAILACCDSLCLLNEFQSFLRMTLKLT------------------------- 43 31234.CRE03348_from_55_to_348 98.4% 19.8% NLIGNFGNFNVICATWRSKNLQSKHGWLLVILCSEHSLCLLFEFINVYFALSGV-------------------------- 44 6239.F38E1.8_from_18_to_280 97.3% 18.5% ATIGVFGNLAIVIITFKYKSLQSRCCVLIGIMAFFNLFYCIYFIQLRVMMIMEIY------------------------- 45 6239.C39H7.8_from_22_to_286 99.2% 19.5% QVFGLFGNINLIVLTIRKKSLQSKYGYILGVLASIHSFCLLYESINMTFGIVATFYHY---------------------- 46 31234.CRE05516_from_18_to_297 98.0% 17.5% SVVGIIGNLTIVLVTIINKTLHSRCCILIGIMAFFNIIVGIYVTQLRIMMLFGIY------------------------- 47 281687.CJA13446a_from_17_to_254 89.1% 19.2% EVFGLFGNVNLVFVILRNKMLRSKF---------------------------ATFYAY---------------------- 48 54126.PPA23244_from_16_to_258 91.0% 20.7% VFFGFFGNLSFIYTIATNEKIRSSRALLLCILCVMHCVMLLHNFINVFRIMGRI-------------------------- 49 54126.PPA27165_from_20_to_272 94.1% 13.1% AVIGVVLNTILLLTTIFTKKLRSTANILIGCCALFDIMHECGYF-IQFPILFSDY------------------------- 50 54126.PPA11511_from_23_to_234 80.5% 13.7% TTLGIFFNSLVVFATVQTKSLHNSCNVLIAFCATCDILHQT--------------------------------------- 51 54126.PPA26795_from_20_to_276 95.3% 11.2% FVVGVVTNAAVAFASYHDSRLRNSCNILIAFASIADCLHLSGHIVLIYAFATGNL------------------------- 52 54126.PPA28485_from_21_to_281 92.6% 13.6% SGMGFMCNLILLLTTVRSKSLRRPCNILIGSCALFDMLNEIGTL-LAAPQVYLEE------------------------- 53 54126.PPA28486_from_23_to_244 84.8% 15.7% AAFGAVSNFSLFVVTVRTKSLRSTCHILIGFCALLDGIHQIGPFFLSPMLFADQ-------------------------- 54 54126.PPA15623_from_20_to_235 79.7% 11.2% VVVGIVGNGAVAFASYQDKRLRNACNILIALASVADCLHVAGHIPLVYAFVSGHL------------------------- consensus/100% ..hu.h.s..hh.h.h................................................................ consensus/90% .hhGhhuN..hlhhhhhp..hps..thl..h.sh.phhh........h................................ consensus/80% .hhGhhGNh.hlhhhhppppLpo.sthL.sh.shhchhp.h..h..hh...h............................ consensus/70% .hhGhhGNh.hlhhhhppKpL+opsshL.sh.shhchlphhsph..hhhhhht........................... cov pid 81 . 1 . . . . : . 160 1 6239.C13D9.4_from_19_to_274 100.0% 100.0% -----------------QLNREECYQIIAFY------VLFQSAQSVI----MVVI------VLDILIFVKFPTFYRNIS- 2 6239.C13D9.5_from_19_to_274 100.0% 44.9% -----------------EIRRDECFIFISFY------IFSQAAQGLL----MLLI------MIDVLIFVKFPLFYRNLA- 3 6239.F26G5.10_from_19_to_274 100.0% 58.2% -----------------SFNRRECFWQISFY------IFFQAAQGII----MLVI------VIDILIFVKYPFFYRSIS- 4 6239.F07B10.6_from_19_to_277 99.2% 16.9% -----------------KSSQAACFFMMIHT------VIGYCISGPL----LLAI------GIDRIIACRFPITYRLLL- 5 6239.Y97E10B.3_from_21_to_277 100.0% 37.7% -----------------KLPRNQCYTKVSIY------TFFETVQAMI----MLFL------VVDILVIVKFPRFYHTFS- 6 6239.C13D9.6_from_19_to_274 100.0% 46.1% -----------------NIKRRECFMYISFY------VYSQAAQGVL----MLII------MLDLLILIKFPLQYMNIA- 7 6239.Y97E10B.9_from_21_to_277 100.0% 28.4% -----------------QLRRNICFPAISLY------IFFICAQAVI----MLML------VVDLFIIVFFTTFYRRIE- 8 6239.F58D7.1_from_20_to_289 99.2% 19.5% -----------------QTHRDECFRSVIVY------MFAVLFQSTL----FLMM------AIDLFLAVIMPIRHKLWR- 9 6239.T19B10.10_from_19_to_276 98.8% 15.7% -----------------PGSQELCFWLLLPS------TIGLLMSGPL----LLSM------GIDRLIACQLPVFYRQLC- 10 6239.F26G5.12_from_19_to_274 100.0% 51.2% -----------------PMNRYKCFWFISYF------IFSQTAQDII----MLII------VLDILCFVQFPFLYMRIS- 11 6238.CBG08634_from_19_to_273 98.8% 49.2% -----------------LYRRNECLKRIAFY------IFFQTAQGII----MMVI------VLDILAFVKFPVFYRRLS- 12 6239.M01B2.7_from_16_to_269 97.3% 16.5% -----------------PSTQEFCFYISIPA------DFGAFASNAC----VLAI------GIDRLIAVAAPTRYKLLE- 13 6239.C51E3.5_from_20_to_275 98.0% 17.6% -----------------YSYQSTCYMLNVLP------VIGLTLAAPL----LMQI------GLDRLLAVSFPIRYRELQ- 14 135651.CBN00346_from_22_to_292 100.0% 28.0% -----------------QLKRSECFPAISIY------IFFICAQALI----ILMM------TIDIFIIVFFPTFYPTIA- 15 281687.CJA00050_from_22_to_278 100.0% 33.1% -----------------QWRRYECFSVISIY------IFFICAQAVI----IQMM------TLDIFIIIYFPAFYRSIA- 16 31234.CRE30968_from_20_to_321 98.4% 14.7% FKNLIKSLTTKPTSVTVTSTQAQCFYMLTVP------LIGLTSGGPL----ILSM------GIDRLIAVKYPTRYRIIQ- 17 6239.M01B2.9_from_16_to_272 97.3% 16.3% -----------------PITQEFCYFMSIPA------DFGAFASSAC----VLDV------GIDRLIAVALPARYKTLE- 18 6239.Y62E10A.4a_from_20_to_282 97.7% 20.4% -----------------MLTSTQCFLLSAYG------LFALNMQSSL----CLII------GLDRLYNVTYPLRYSQLP- 19 135651.CBN26010_from_19_to_274 99.6% 57.2% -----------------MYNREQCFNRVAFY------VFFQAAQGLI----MVVI------VADILIFVRFPIFYRSLS- 20 135651.CBN23690_from_19_to_274 100.0% 50.8% -----------------TLTRRKCFTHIFFY------IFCQAAQGLI----MLFI------MLDFLVMIRFPMFYRNIS- 21 31234.CRE30970_from_17_to_275 99.2% 15.3% -----------------TSSQSECYFMLILP------IIGYTAGGPL----ILAM------GIDRFIAVTFPTSYRYYQ- 22 6238.CBG19119_from_20_to_291 98.4% 13.8% -----------------TDTQANCYWMLFFT------SIGKCMANPL----RLMT------GIDRFIACKSPVVYRALL- 23 6238.CBG09532_from_20_to_295 98.4% 15.4% TFQILTVFQSNPNSFPVTSSQAQCFYMLIIP------LYGVGASGPL----ILAM------GIDRLIAVKLPTKYRLFQ- 24 135651.CBN29283_from_14_to_296 96.5% 16.1% -----------------SLTGRECFLYNVPY------SFSVMFQSAL----FLSM------ALDLCFCIMLPIKHMLWP- 25 6238.CBG08636_from_19_to_274 100.0% 47.7% -----------------TRTRQNCFVHISFY------IFCQAAQVLI----MLII------MADILVSVKFAIFYHNLS- 26 6238.CBG08632_from_19_to_276 100.0% 50.8% -----------------VYTRSDCFHKIAYY------IFFQAAQGMI----MLII------VLDILIFVKFPVFYRRLS- 27 31234.CRE30966_from_56_to_346 100.0% 16.2% -----------------FSYQSTCYLLNFFP------VIGLTIAAPL----LMEI------GLDRLLAVSFPIKYRELQ- 28 31234.CRE30969_from_20_to_282 91.0% 14.7% RVHVLVYSHILSSSMFLYPHYPDCW--------------------------LHHG---------RLIAVKFPTKYRYYQ- 29 135651.CBN17450_from_19_to_275 100.0% 51.0% -----------------TLNRGDCYDIIAFY------VFFQAAQGLI----MVII------VADIFVLVRFPIFYLNIS- 30 6238.CBG27007_from_22_to_278 100.0% 33.9% -----------------QLGRTSCFHVMVPF------VFFEAAQAVI----MLEL------VIDVYIIVKMPGFYKTVK- 31 31234.CRE05430_from_14_to_320 100.0% 16.6% -----------------SLTGRECFLYNVPY------SFCVMFQSAL----FLSM------ALDLCFCIMLPIKHMLWP- 32 6238.CBG08631_from_21_to_242 86.3% 35.8% -----------------QLPRSQCYPKVSTY------TFFETVQSMI----MLFL------VIDILIIVKFPRFYHTFS- 33 31234.CRE27496_from_726_to_974 96.9% 45.5% -----------------SLTRKKCFTHISFY------IFCQAAQGLI----MLFI------MVDILVLVMFPIFYHNLS- 34 135651.CBN29047_from_20_to_240 85.2% 15.8% -----------------TSSQSDCYFILILP------IVGYTAGGPL----ILAM------GIDRYIAVTYPTTYR---- 35 6238.CBG09288_from_19_to_302 98.4% 17.4% -----------------LFRDSLMFNDLKIHPNPQRRMFSVC--SCLHVRSFISIYTVFNDGIDLLLAVVMPIRHKLWQ- 36 135651.CBN23941_from_21_to_237 84.4% 26.1% -----------------QLKRNTCFPAICLY------IFFICAQAVI----MLML------VIDLFVIVFFTTIYLRIH- 37 31234.CRE14827_from_14_to_284 97.3% 15.8% -----------------AMSKKTCFEYNILY------KFAVMFQSAL----YLSM------AMDICFSIVLPIKHMIWK- 38 31234.CRE18778_from_17_to_272 99.6% 26.5% -----------------EILRETCFHIIVPN------IFCYCVQSSI----MVFI------LLDILFIVMFPIAHRNFS- 39 31234.CRE13437_from_22_to_286 99.2% 22.1% -----------------KILRGVCFKAVFPY------IFLNSMQTGT----MWIL------SLDLLITIIFPLKSRHFN- 40 6239.C03G6.16_from_18_to_279 96.9% 14.4% -----------------VMSSSTCFLISIYG------IFAMNMQSLL----ALFI------GIDRVYVIVYPGKYAKLS- 41 6239.C39H7.9a_from_22_to_286 99.2% 20.6% -----------------RIFRSICFHTTFPV------ILAHCLQTGT----ICIL------SLDLFLAIVIPFKYRHFR- 42 6238.CBG19386_from_18_to_280 99.2% 17.7% -----------------ESTLRKCFWANSSY------VFIEPLEVYM----IFAL------AVDRLIALNFVVLYRTVN- 43 31234.CRE03348_from_55_to_348 98.4% 19.8% -----------------QITRRSCLLYLSPY------IFINFLQSTT----FIAL------AIDVLLSFTVASQYRNWQ- 44 6239.F38E1.8_from_18_to_280 97.3% 18.5% -----------------NITNNLCFFLSIYG------IFSLNMQSMI----GLFI------GLDRLYSVSFPVKYSTIP- 45 6239.C39H7.8_from_22_to_286 99.2% 19.5% -----------------QIRRELCFYTMFPY------VFAHCLQTGT----VWVL------SLDLLITILFPIKSRRFY- 46 31234.CRE05516_from_18_to_297 98.0% 17.5% -----------------NILNTTCFLYSFYG------IFAMNMQSIL----GLFI------GLDRLYNVSSPIKYEIFSD 47 281687.CJA13446a_from_17_to_254 89.1% 19.2% -----------------TIHRSTCFHATFLG------VVTHCLQTGI----FCIL------AFDLFLAILIPFKYRIFH- 48 54126.PPA23244_from_16_to_258 91.0% 20.7% -----------------RLTKQECIWAQTIPPT----MYAVSHQSIL----YVVL------GV----------------- 49 54126.PPA27165_from_20_to_272 94.1% 13.1% -----------------YIDSYYCSLMQFIP------ALGRAAGAVC----VFCI------GVDRMICLLTVTFYKNM-- 50 54126.PPA11511_from_23_to_234 80.5% 13.7% -----------------------------IP------IFGLSGGSFG----VLSI------GIDRFLS------------ 51 54126.PPA26795_from_20_to_276 95.3% 11.2% -----------------LMKSTTCVWIEILP------IIGQNSGTAF----TVAI------GIDRVFACFSPVKYGRK-- 52 54126.PPA28485_from_21_to_281 92.6% 13.6% -----------------SFSSRACVALLFLP------GMGVVAGSFT----VLSI------SIDRFLAISAPDRYRNM-- 53 54126.PPA28486_from_23_to_244 84.8% 15.7% -----------------PIENAKC---------------------------------------------------RSNR- 54 54126.PPA15623_from_20_to_235 79.7% 11.2% -----------------LMNTSDCIWVELLP------IIGQNSGCAF----ILAI------GIDRLFACFSPF------- consensus/100% ................................................................................ consensus/90% ....................pt.Ch.............h....ts.h....hh.h.......hDhhh.h..sh....h.. consensus/80% ...................ppt.Ca.h..........hhh.shts.h....hh.h......slDhhhhl.hPhhah.h.. consensus/70% ..................hppppCahh.hhh......lhh.shpuhl....hlhl......slDhhlhlhhPhhY+.ht. cov pid 161 . . . 2 . . . . 240 1 6239.C13D9.4_from_19_to_274 100.0% 100.0% ------------KSQYIFVTTFPVITCSIIITVYGYTA---TNED-------------------WIPACTPGFAFTIEAS 2 6239.C13D9.5_from_19_to_274 100.0% 44.9% ------------NWKYFSSCFIFVFLYSSTVILYGYLT---TNDD-------------------IIHACNPLFAFALTSR 3 6239.F26G5.10_from_19_to_274 100.0% 58.2% ------------FSTYLIATSFPVLMCSTVVTAYSYYS---VNEE-------------------VINTCVPMFVLSNQAS 4 6239.F07B10.6_from_19_to_277 99.2% 16.9% ----------SYGSVYLGIQLIFPITFTSALMIYGYQF---IDYN-------------------TQIICMAPLALPRQAF 5 6239.Y97E10B.3_from_21_to_277 100.0% 37.7% ------------TEWYIILALILPVIFGIIFFIWGFIE---TDDE-------------------IVIFCNPPLGLNITAS 6 6239.C13D9.6_from_19_to_274 100.0% 46.1% ------------SRKYLFVSFMLVILYSSSVTLFGYLT---TNDD-------------------TIHVCNPVFALNTTAS 7 6239.Y97E10B.9_from_21_to_277 100.0% 28.4% ------------NTTYTAMMLFIPFVYSAFTVAWGFVK---MDDE-------------------LVIFCNPPISLHPVVS 8 6239.F58D7.1_from_20_to_289 99.2% 19.5% ------------RGPYLFALCIPPMLFSCFALFIEEIY---INHD-------------------DLLICTVTLAAPPAVR 9 6239.T19B10.10_from_19_to_276 98.8% 15.7% ----------SRPSFYLCIQLSFPIIYTSYITVISFLQ---RDSE-------------------TMVICQVPLAMSGNSF 10 6239.F26G5.12_from_19_to_274 100.0% 51.2% ------------KIKYIFFTGFPVFITSCAITVYSYYV---ANYE-------------------YIPDCAPMFVLDTFSS 11 6238.CBG08634_from_19_to_273 98.8% 49.2% ------------SSAYIAFVTVPVLAFSVFTTSLAIFT---TNDE-------------------FVYSCGPPFAFDAQTG 12 6239.M01B2.7_from_16_to_269 97.3% 16.5% ----------NERYKYLFLQMTFPVIYSSTLLIMGFGQ---RDPR-------------------RNVVCLLPESL-GHAY 13 6239.C51E3.5_from_20_to_275 98.0% 17.6% ----------FQKLFYTSIHLIFPILYTISILYLGFLE---RNNE--------------------QVKCAIPTALAGISF 14 135651.CBN00346_from_22_to_292 100.0% 28.0% ------------TWKYLTGMIVVPVVYSSGVVIWGFVT---MDDA-------------------IVMFCNPPLGLHPTVS 15 281687.CJA00050_from_22_to_278 100.0% 33.1% ------------TWKYLTAMLVYPAIYSGIVVVWGFIA---MDDE-------------------LLMFCNPPLSLEPTVS 16 31234.CRE30968_from_20_to_321 98.4% 14.7% ----------DEPKLYIFVQLLFPMAYAVIFLIYGFLV---RDTN-----------------VKNQIICANPLALNGTAF 17 6239.M01B2.9_from_16_to_272 97.3% 16.3% ----------HDRFWYLFILIAFPVVYAVVLLYVGFTQ---RDPS----------------RNFIFVVCLVPESL-GHAY 18 6239.Y62E10A.4a_from_20_to_282 97.7% 20.4% -------------NSFYIALFLFCVGFSVLITYSGYSY---ASDS------------------EIVLVCLPPTAYTDKSR 19 135651.CBN26010_from_19_to_274 99.6% 57.2% ------------TTVYICVTAIPVLAFAGFTTFYGYLS---KNKD-------------------WIPSCSPPFLFTSEAS 20 135651.CBN23690_from_19_to_274 100.0% 50.8% ------------NSIYFGLTCIPIISYSLFVVSFGYFT---TTEE-------------------QIHACNPLFAFSVTSS 21 31234.CRE30970_from_17_to_275 99.2% 15.3% ----------QSSVKYLALQLIFPTIYTSFFLVFGFLE---RDIN-------------------EQITCANPLALKGASF 22 6238.CBG19119_from_20_to_291 98.4% 13.8% ----------ERPALYICAQLVLPATYTSFLMVSGFIQ---RDPI----SYSNPSKFKYQSSIFRKIYCTVPLAFAGSTF 23 6238.CBG09532_from_20_to_295 98.4% 15.4% ----------QEPKHYIFGQLVFPIVYTLVLLYYGFHY---RIVD-----------------DKLQIACAVPLALMGTPF 24 135651.CBN29283_from_14_to_296 96.5% 16.1% ------------KTKYVLIMCIMPTCFALIVFFLNFLF---VTDE-------------------NAPYCAFM-------- 25 6238.CBG08636_from_19_to_274 100.0% 47.7% ------------TWKYTLSVSIPVLIYSSFVVFYGYLT---TNEE-------------------PIQACNPLFAFSFPAS 26 6238.CBG08632_from_19_to_276 100.0% 50.8% ------------VTKYIFISGSPILLFASAYVILAHLT---TNEE-------------------TVYACTPPFAFSTTAS 27 31234.CRE30966_from_56_to_346 100.0% 16.2% ----------FQKVLYTSIHLIFPILYTAAILYLGFIE---RNNEWVSPKLIYALFEIVHFRNYRQVKCAIPTALAGVSF 28 31234.CRE30969_from_20_to_282 91.0% 14.7% ----------EEPRNYVIAQLAFPVLYSIAFLVYGFLV---RDTD-----------------AKNQMVCSNPLSLNGYSF 29 135651.CBN17450_from_19_to_275 100.0% 51.0% ------------TTVYVIFTSFPVLAFSISTTYLGYLS---QDEG-------------------RIPSCSPPFVFQPKAG 30 6238.CBG27007_from_22_to_278 100.0% 33.9% ------------TWIYLLAALIAPSIVGIIFSIWGFTY---LDDE-------------------EIYFCNPTSSLHTTAS 31 31234.CRE05430_from_14_to_320 100.0% 16.6% ------------KKKYILIMCIMPTCFALIVFFLNFLF---VTDE-------------------NAPYCAFMLSKSICRM 32 6238.CBG08631_from_21_to_242 86.3% 35.8% ------------TTKYIILALIPAITCGMVFFVWGFVG---TNDE-------------------IVIFCNPPLG------ 33 31234.CRE27496_from_726_to_974 96.9% 45.5% ------------NGKYTASTLVPIFVYSSTVVLYGYFT---TNDE-------------------IIHACNPLFAFSVSSS 34 135651.CBN29047_from_20_to_240 85.2% 15.8% -----------------------------------------------------------------QIICANPLALNGTAF 35 6238.CBG09288_from_19_to_302 98.4% 17.4% ------------RGPYLLILCTPPILFSSFAIFIEQLY---INHE-------------------NLLMCTVSLAAPRNVR 36 135651.CBN23941_from_21_to_237 84.4% 26.1% ------------NGLYAVLMLSVPFMYSTFTVAWGFMK---MDEE-------------------VILFC----------- 37 31234.CRE14827_from_14_to_284 97.3% 15.8% ------------KRNYVTAMCIFPAVFATSTTVVSFLF---IPDE-------------------EIPYCIFMLT------ 38 31234.CRE18778_from_17_to_272 99.6% 26.5% ------------DWKYVTAMAMIPFLWGGFIVIWGFQG---EDYS-------------------SLHLCSSFMALQRPIR 39 31234.CRE13437_from_22_to_286 99.2% 22.1% ------------IPIYFSLLFFFPVVYGSTAIIFGYMY---LDDE-------------------TLPMCNPPSALHPIVQ 40 6239.C03G6.16_from_18_to_279 96.9% 14.4% ----------INYYYLMV---TLCALISLLVTFCKFVF---YSDE-------------------VVTNCLLSTALHGIPF 41 6239.C39H7.9a_from_22_to_286 99.2% 20.6% ------------MSFYLPMLLFLPLAYAVGIVVAAKIL---LDDA-------------------EISMCNPPSSMVPSVR 42 6238.CBG19386_from_18_to_280 99.2% 17.7% ------------RNKYLLILVTPGILFGFIFLVVSMVQ---LDDS-------------------DVDPCILPNSMPPNVS 43 31234.CRE03348_from_55_to_348 98.4% 19.8% ------------TTGYCSVMALSPCVLPIAFLTRLWSQ---VSDE-------------------IIFLCNPPLSMDAKAV 44 6239.F38E1.8_from_18_to_280 97.3% 18.5% -----------VYQYGIV--FSCCCILSLVVSLAKLFY---LSED------------------IVLTVCYPTTSMYGVPL 45 6239.C39H7.8_from_22_to_286 99.2% 19.5% ------------TPTYLSILFFLPVIYGVISVIFGFIF---LDNA-------------------VLSMCNPPSSLHTYAN 46 31234.CRE05516_from_18_to_297 98.0% 17.5% SNQSICYYFCVLYNYFFVSYFFKICFSGRYSTISDITYSRSFSEE------------------IVIVVCIPVTALYETSL 47 281687.CJA13446a_from_17_to_254 89.1% 19.2% ------------ISWYFPCLYALPMCYAFGVTVAAMVW---LDDE-------------------QIPMCNPPSAMIPSVR 48 54126.PPA23244_from_16_to_258 91.0% 20.7% -------------HSY-SVTSIPCILYSSSFIVASAFY---DDDR-------------------QIAVCNPPEAFPRVVN 49 54126.PPA27165_from_20_to_272 94.1% 13.1% -----------KRMQFLICHFIAIALFCAFTTYLMIAF---WTPK--------------------QQICSMPAPFHGDSL 50 54126.PPA11511_from_23_to_234 80.5% 13.7% -------------------AFLFIVLYCAGQYYLMFAF---TVDQ--------------------PIICIPPEAFYGEAK 51 54126.PPA26795_from_20_to_276 95.3% 11.2% -----------NPIIYICCHLVGISLYLAYHFYNLFAN---LYPT--------------------DLICMVPANYLGKAK 52 54126.PPA28485_from_21_to_281 92.6% 13.6% -----------SLAVYLTIQYLSIFFFCAYNAILVFSF---YRDR--------------------QVIC----HLYTDAA 53 54126.PPA28486_from_23_to_244 84.8% 15.7% ----------DWLAWRDNLHLLLIVCFAGYACYLMIAY---FNPG--------------------IQMCSIIAPFHSEAA 54 54126.PPA15623_from_20_to_235 79.7% 11.2% ----------------------------------------------------------------LDLICMVPSNYLGEAK consensus/100% ....................................................................C........... consensus/90% ...............hh.......hhhs...hh..h.....hs.t.......................C....sh..... consensus/80% ...............Yh.h.hh..hhhs.hhhhhthh....hs.p......................hC....sh...s. consensus/70% ..............hYhhhhhh.shhauhhhhhhuahh...hspp....................hhhCssshuh.sts. cov pid 241 : . . . . 3 . . 320 1 6239.C13D9.4_from_19_to_274 100.0% 100.0% R------------------------------------IYKLFILLMSVFVTVIYAVLIRTFYLK--------------GH 2 6239.C13D9.5_from_19_to_274 100.0% 44.9% Y------------------------------------TFKSSMLILSLLTLIIYIVMIRIFKNK--------------NK 3 6239.F26G5.10_from_19_to_274 100.0% 58.2% T------------------------------------VYKLFIIFINIIVTVVYVILIRTFHLK--------------KQ 4 6239.F07B10.6_from_19_to_277 99.2% 16.9% G------------------------------------YFTYSSNIINVKIVIVYAYTYFVLRGY---------------- 5 6239.Y97E10B.3_from_21_to_277 100.0% 37.7% T------------------------------------WFFRYILFLNLLTLIVFLILIRIFYAK--------------DQ 6 6239.C13D9.6_from_19_to_274 100.0% 46.1% L------------------------------------ISKSLILFMSSITLFVYIIIIILYKKK--------------KD 7 6239.Y97E10B.9_from_21_to_277 100.0% 28.4% R------------------------------------WWSMSNVALNSITLCLFLFLIITFHFR--------------GK 8 6239.F58D7.1_from_20_to_289 99.2% 19.5% FWGT---------------------------------LITISTIFLAVSLIFVTAFKVHINERESARRILRHSNSI--TS 9 6239.T19B10.10_from_19_to_276 98.8% 15.7% E------------------------------------LFNQGGLLINVAVVLIYFTTYIKLKKV---------------- 10 6239.F26G5.12_from_19_to_274 100.0% 51.2% I------------------------------------IHKILTLFLNGIVTFVYIILICIFYLK--------------NQ 11 6238.CBG08634_from_19_to_273 98.8% 49.2% V------------------------------------YYNMLFILLGIIVMILYLILIWIFQTSNQ------------NR 12 6239.M01B2.7_from_16_to_269 97.3% 16.5% D------------------------------------MFALSSFGINLFVPPLYAYVYFKVKNM---------------- 13 6239.C51E3.5_from_20_to_275 98.0% 17.6% K------------------------------------VFTLSSHAIYVSIILAYLMTAILLKFH---------------- 14 135651.CBN00346_from_22_to_292 100.0% 28.0% R------------------------------------FWTFSSVVINTITLILFISLIFVFYCK--------------GK 15 281687.CJA00050_from_22_to_278 100.0% 33.1% R------------------------------------FWTLSNVIINTITLVMFLTLMVIFYYK--------------GK 16 31234.CRE30968_from_20_to_321 98.4% 14.7% Q------------------------------------MFTYSSGVIYVFVFIVYLTVYLLLKNN---------------- 17 6239.M01B2.9_from_16_to_272 97.3% 16.3% D------------------------------------LFALTSFFINLFVLPIYVYVYLKIKKM---------------- 18 6239.Y62E10A.4a_from_20_to_282 97.7% 20.4% I------------------------------------IWIGSNFIIAILVIFVYGGAQIRCRIL---------------- 19 135651.CBN26010_from_19_to_274 99.6% 57.2% I------------------------------------AYKYLFIFFSVIVMAFYLILIRTFNHRR--------------Q 20 135651.CBN23690_from_19_to_274 100.0% 50.8% L------------------------------------VLKCLILILCSITMIIYIILIRMFHRK--------------DR 21 31234.CRE30970_from_17_to_275 99.2% 15.3% Q------------------------------------WYNYTCAFIYVAIFFVYFRVYFLLKHS---------------- 22 6238.CBG19119_from_20_to_291 98.4% 13.8% S------------------------------------QFNTSGIFVNVAIVIVYFFTFLQLRS----------------- 23 6238.CBG09532_from_20_to_295 98.4% 15.4% Q------------------------------------FFTYSSALIYFLVVIVYGIVYYLLKSN---------------- 24 135651.CBN29283_from_14_to_296 96.5% 16.1% ----------------LIRTAKKDVLNDSAMDDGVFETISTSVVVCNILTFIITVVSVLVAIRKSQDMRNHRHSQMTRRN 25 6238.CBG08636_from_19_to_274 100.0% 47.7% L------------------------------------LHKCQILFLCFVTTAIYIILIKMFHKM--------------ER 26 6238.CBG08632_from_19_to_276 100.0% 50.8% M------------------------------------FYNQTFITLSVVVLLFYTILINAFYTRSR------------NQ 27 31234.CRE30966_from_56_to_346 100.0% 16.2% K------------------------------------VFTLSSHAIYVSIILAYAMTAVLLKFH--------------DT 28 31234.CRE30969_from_20_to_282 91.0% 14.7% Q------------------------------------MFTYTSGIIYIAVFFIYLSVYVMLKSN---------------- 29 135651.CBN17450_from_19_to_275 100.0% 51.0% V------------------------------------SYKYLFISFSIVVMVFFIIIIRLFHKKH-------------NQ 30 6238.CBG27007_from_22_to_278 100.0% 33.9% K------------------------------------NYTRCIVIINSLTLIIFAILILIFYKK--------------SQ 31 31234.CRE05430_from_14_to_320 100.0% 16.6% CLSSCMLYHSSCFVYVLVRSPKKEVVNDSAMDDGVFEIISTSVVVCNIITFIITVVSVIVAIKKSQDMRNHRHSTVTRRN 32 6238.CBG08631_from_21_to_242 86.3% 35.8% -------------------------------------------------------------------------------H 33 31234.CRE27496_from_726_to_974 96.9% 45.5% F------------------------------------IHKCLILFLCSFTMLIYILLIRMFHRK--------------DK 34 135651.CBN29047_from_20_to_240 85.2% 15.8% Q------------------------------------MFTYSSGIIYVFVFIVYLTVYILLKSN---------------- 35 6238.CBG09288_from_19_to_302 98.4% 17.4% FWGT---------------------------------IITFSTVLLAVALIIVTAVKVHINEQAASSPFIRHSFSM--SK 36 135651.CBN23941_from_21_to_237 84.4% 26.1% -------------------------------------------------------------------------------R 37 31234.CRE14827_from_14_to_284 97.3% 15.8% ------------------------------TDMRIYQMVSSALIALNTLTVIIIVLSVVCAVRKSENMRGSRHSSSSRTN 38 31234.CRE18778_from_17_to_272 99.6% 26.5% K------------------------------------VLAPVTVASNTLSLLIFLILILVF-KK--------------KG 39 31234.CRE13437_from_22_to_286 99.2% 22.1% A------------------------------------QWYYFMMVFTILTVVFYTIALALIYYKA--------------- 40 6239.C03G6.16_from_18_to_279 96.9% 14.4% K------------------------------------IWQFMNFFITVAVIFVYSLAHINFQTL---------------- 41 6239.C39H7.9a_from_22_to_286 99.2% 20.6% Q------------------------------------RWYEIMLIFSFLTVILYSGAFGLLSVKM--------------- 42 6238.CBG19386_from_18_to_280 99.2% 17.7% N------------------------------------IWNQYNLWGAVATLLVYIYTYMVVYCCTF-------------- 43 31234.CRE03348_from_55_to_348 98.4% 19.8% N------------------------------------IWG--GLITSINITILLIYGYVYFYSHQT-------------- 44 6239.F38E1.8_from_18_to_280 97.3% 18.5% S------------------------------------IWLGMNFSIAVVVIFVYGGAHIKCRKL---------------- 45 6239.C39H7.8_from_22_to_286 99.2% 19.5% A------------------------------------IWYCIMMIFTILTVLFYSVAFVVLHYKQ--------------- 46 31234.CRE05516_from_18_to_297 98.0% 17.5% Q------------------------------------IWLCFNFVIAVSVIIVYGWTHIMCRNL---------------- 47 281687.CJA13446a_from_17_to_254 89.1% 19.2% G------------------------------------WWYQLMLVFCFFTILFYSGAVGLLSLKI--------------- 48 54126.PPA23244_from_16_to_258 91.0% 20.7% N------------------------------------VRTQVGLVLGVIVLLLYLY---IIYLLIR-------------- 49 54126.PPA27165_from_20_to_272 94.1% 13.1% G------------------------------------IWSNTITGINLLSALIYFITWQVVKRR---------------- 50 54126.PPA11511_from_23_to_234 80.5% 13.7% M------------------------------------LWSITSCIVYVAAVLVYCVVWAVLKRQ---------------- 51 54126.PPA26795_from_20_to_276 95.3% 11.2% GE-----------------------------------WWNVSLGCCIL-AVIVYAIVGVRIKMS---------------- 52 54126.PPA28485_from_21_to_281 92.6% 13.6% IT-----------------------------------LWAAAAALVNIVAILIYAVTWRLIRKT---------------- 53 54126.PPA28486_from_23_to_244 84.8% 15.7% D------------------------------------LFVSKLILVNTATIVIYTITAIAIAKK---------------- 54 54126.PPA15623_from_20_to_235 79.7% 11.2% PT-----------------------------------WWIVSLTCCLV-AVAIYAIVGIRIKTS---------------- consensus/100% ................................................................................ consensus/90% ......................................h....hhh...hhhhh.h.hhhh................... consensus/80% .....................................hh....hhh.hhshhhahhhhhhhh.................. consensus/70% .....................................hath..hhhshhshllYhhhhhhhhtp................ cov pid 321 . . : . . . . 4 400 1 6239.C13D9.4_from_19_to_274 100.0% 100.0% HENSS-------------SLKTMKRLQFSVGIFIF-TWFFSQ-IFGLIILQMTEYTAFEASL-------FAHN------- 2 6239.C13D9.5_from_19_to_274 100.0% 44.9% SRNKD-------------SIKIMRRLQLSVVIFVF-TWLVSQ-ALAMVFLHDDGSIHWEKIV-------FVHN------- 3 6239.F26G5.10_from_19_to_274 100.0% 58.2% TGNLT-------------SLKTIKGLQFSVSIFIF-TWFFSQ-IIALLILKQYSSSSWENII-------YMHN------- 4 6239.F07B10.6_from_19_to_277 99.2% 16.9% KERDA-----------NRMRYVFKSIALTVIVVLI-GWTTVT-IGNTIALGVIEDRHTSEII-------SIHA------- 5 6239.Y97E10B.3_from_21_to_277 100.0% 37.7% AKRGD-------------SWKVMKRLQISVVIFVC-SWFIAQ-SANSVFIALGITGETFNFL-------VANV------- 6 6239.C13D9.6_from_19_to_274 100.0% 46.1% GRNDD-------------SSKILNRLKVLVVIYIF-TWFVNQ-IFAILFLHDNGTVKWEKML-------FTHN------- 7 6239.Y97E10B.9_from_21_to_277 100.0% 28.4% KQKSD-------------TRKLMKRLKVSVVVFVF-SWYMCT-LGVDLFVAIGMTGSVLVFF-------QSNM------- 8 6239.F58D7.1_from_20_to_289 99.2% 19.5% NTKCS-------------DSKLLKSLSTLMFVFVC-SWSLSI-LLSHV--SLYFTKNVAYEI-------QKYN------- 9 6239.T19B10.10_from_19_to_276 98.8% 15.7% TANA------------SQLKTVFKSILYTVIFVIL-GWCTVT-VVNIGCIHLVENIENQHII-------SIYA------- 10 6239.F26G5.12_from_19_to_274 100.0% 51.2% TGNQN-------------SLKTMKRLQFSVAIFIF-TWFFSQ-AIALFLRERDFQTTWEIIL-------YVHN------- 11 6238.CBG08634_from_19_to_273 98.8% 49.2% TN----------------FLRTIKRLQLSVLIFIF-TWFFGQ-ILGFVVLRAPEFSEWSGMM-------FAHT------- 12 6239.M01B2.7_from_16_to_269 97.3% 16.5% SDN-------------NSIKTVFKSLSVTVCLVVC-GWMTTD-LIGALTVILPMDRSVARMV-------QLYC------- 13 6239.C51E3.5_from_20_to_275 98.0% 17.6% DTS-------------SRFKAVFKSIGVTVGIVLF-GWAITT-VSNTFGLFVTDDMEVYNLI-------QMYS------- 14 135651.CBN00346_from_22_to_292 100.0% 28.0% KQKSD-------------TRKIMKRLKVSILFFIS-TWCIGL-LAADLFLAIGLTGDTLNFM-------MSNL------- 15 281687.CJA00050_from_22_to_278 100.0% 33.1% QQKSN-------------TKKVMQRLKVSILFFIC-TWYMGL-LICDMSVAVGFTGETLILL-------LTHA------- 16 31234.CRE30968_from_20_to_321 98.4% 14.7% KAS-------------ARFKSVFRSLAVTVGLVMF-GWVSTT-TANTLSYSISDTPYTAQLI-------QMYA------- 17 6239.M01B2.9_from_16_to_272 97.3% 16.3% GLN-------------SSMKAVFKSLMITVCLVLC-GWMATD-TVGALSLTLPIDKNVARMM-------QLYA------- 18 6239.Y62E10A.4a_from_20_to_282 97.7% 20.4% RA------RHVHEQSMDAVNRLLKSLSIVVTIYVC-TWFLTI-SSLVVSQLITFSPPVTAEI-------NRQL------- 19 135651.CBN26010_from_19_to_274 99.6% 57.2% SNDKN-------------SLKTVKRLQLSVIIFFF-TWFFSQ-VFGLVVLTITEYSVSGGMI-------FAHN------- 20 135651.CBN23690_from_19_to_274 100.0% 50.8% TPNCD-------------SLKIMRRLQFSVVIFIF-TWLFSQ-IIALIFLRDGAMVKSERMI-------FAHN------- 21 31234.CRE30970_from_17_to_275 99.2% 15.3% QTILD-----------SRFKSVFRSILVTVSFVLL-GWATTT-IANSSSYSVTDNLDTAHLI-------QTYA------- 22 6238.CBG19119_from_20_to_291 98.4% 13.8% YAGA------------TQMKVVFRSILWTVVLVII-GWSSVT-IANQFAIFVAKDATTRKLI-------AIYA------- 23 6238.CBG09532_from_20_to_295 98.4% 15.4% QAS-------------ARFKSVFRSIMVTVGFVLF-GWVTTT-LTNTLSYEITDVAFTAQLM-------QMYA------- 24 135651.CBN29283_from_14_to_296 96.5% 16.1% STVEE-------------RRKVFRSTFYMMAIYIF-SWMMSS-ICFRILFAYFENEQDIVPY-------MPFL------- 25 6238.CBG08636_from_19_to_274 100.0% 47.7% SQNDD-------------SLKIMKRLQFSVIIFIF-TWLVSQ-VVAIIFLRDGAMVKTERMI-------FAHN------- 26 6238.CBG08632_from_19_to_276 100.0% 50.8% SSNRS-------------SLKTVKRLQLTVIIFIF-TWFTSQ-LLSFIVIFFPNFSKLLGLA-------ISHL------- 27 31234.CRE30966_from_56_to_346 100.0% 16.2% SESSEFWVTVALKITGSRFKAVFKSIGVTVGIVLF-GWAITT-VSNTFGYFVTDDQEIFNLI-------QMYS------- 28 31234.CRE30969_from_20_to_282 91.0% 14.7% KAS-------------ARFKNVFRSILVTVGFVLL-GWVTTT-TANTLSYSITDDLLTIQLI-------QMYA------- 29 135651.CBN17450_from_19_to_275 100.0% 51.0% NHNQH-------------SLKTIRRLKVSVVIYIV-TWLFSQ-VFGLAILKMNAYSSWRGII-------ASHN------- 30 6238.CBG27007_from_22_to_278 100.0% 33.9% NKNPD-------------STKVMKRLQFSVVIFLC-SWYITI-FTYYVCLAAGLEGEELHFV-------INNM------- 31 31234.CRE05430_from_14_to_320 100.0% 16.6% STVEE-------------RRKVFRSTFYMMVIYIF-SWMMSS-ICFRILFAYFENEQDIAPY-------MPFL------- 32 6238.CBG08631_from_21_to_242 86.3% 35.8% KQRGD-------------SWKVMKRLQLSVAIFVC-SWFIAQ-SSNSVFIAIGITGETFNFL-------VANV------- 33 31234.CRE27496_from_726_to_974 96.9% 45.5% TQSDD-------------SLRIMKRLQFSVIIFIF-TWLFSQ-IVAFIFLRDGVMVKSERMI-------FAHN------- 34 135651.CBN29047_from_20_to_240 85.2% 15.8% KAS-------------ARFKSVFRSLAVTVGLVMF-GWVSTT-TANTLSYSIADSAYTAQLI-------QMYA------- 35 6238.CBG09288_from_19_to_302 98.4% 17.4% KPRSS-------------EIKLLKSLATLIFFFIC-SWTLSV-VLFHV--AMYFDSSIGYQF-------HKYT------- 36 135651.CBN23941_from_21_to_237 84.4% 26.1% KERSD-------------TRKLMKRLKVSVVVFVF-SWYMCT-LGVDMFAALGLTGSALAIL-------QSNM------- 37 31234.CRE14827_from_14_to_284 97.3% 15.8% SLRED-------------KSKVFRSTFFLVLIYIV-SWWSVV-VIFRVITEVVSDLSEAAQY-------MPYL------- 38 31234.CRE18778_from_17_to_272 99.6% 26.5% QTSTE-------------SYKIMRHLKVSAALFIF-SNYFSA-FAINFVILLGYSGEDLSNI-------IGNI------- 39 31234.CRE13437_from_22_to_286 99.2% 22.1% HRHNS--------DIRYVERKALKTLKYLIFLFVM-FRFITI-TIASVLIAVGVDKEIVALV-------QNYN------- 40 6239.C03G6.16_from_18_to_279 96.9% 14.4% KK------STVHMKTAKSVDRIMKSMLIVIAFYVC-TWTLGL-CGMFLSQFLQADDIHAFII-------QKLS------- 41 6239.C39H7.9a_from_22_to_286 99.2% 20.6% RRNSS--------DIRLIEKKALRTLKVLIVIFLF-TRFFST-GLATLVTSLGIDPEYSALV-------HNYN------- 42 6238.CBG19386_from_18_to_280 99.2% 17.7% KNKTE--------KNIVIQKAILNTVIVGAAVFSI-SSVLSA-SLIAVTSNMKDPPLDPDTV-------STYA------- 43 31234.CRE03348_from_55_to_348 98.4% 19.8% KKRTS---------DSKMAEKIMRSLTILVMVFCF-SWVTCM-GMVFLVDYFTENPIIIMLV-------RSYAVSLHTSY 44 6239.F38E1.8_from_18_to_280 97.3% 18.5% KN------ANSHVKLVESVNRILKSMIVVISLYVC-TWFLAL-LVIFCTYVLKMDNPFVIAL-------ESVT------- 45 6239.C39H7.8_from_22_to_286 99.2% 19.5% VHKNA--------NVQFLERMCMRTLKYLIVLFVV-FRFITS-IILNLLHIIHVNREVVSFV-------ENFN------- 46 31234.CRE05516_from_18_to_297 98.0% 17.5% RN------NNLHIKTVESVNRILKSLIVVIAFYVS-TWFLAM-AALFIAEVLNLEGEPVYYI-------RRWS------- 47 281687.CJA13446a_from_17_to_254 89.1% 19.2% RQNSS--------DIRLIEKRAMRTLQVLIITFLL-TRFIST-GIATLVTILDVDPEFSALI-------HNYN------- 48 54126.PPA23244_from_16_to_258 91.0% 20.7% KSPTR--------TVKSSQIRAAKSMVALSATYLL-SWFCTV-TISFLATRMPLDSLFIRLY-------NQYA------- 49 54126.PPA27165_from_20_to_272 94.1% 13.1% GAS-------------THQKRIFHSIAVVMVVEVT-GW---------LISSILIDLSKVYVVPERRPPFHYVA------- 50 54126.PPA11511_from_23_to_234 80.5% 13.7% QNM-------------AAMTKIFRSLFIIMLVVVL-GWMLTM--SGVLIASLVFHLEGMKM----YFLHETVG------- 51 54126.PPA26795_from_20_to_276 95.3% 11.2% NMR-------------GHEMRLFKSLLIILATVIC-GYVGTFATANILVANIKVIDFKMGILMDLIIG------------ 52 54126.PPA28485_from_21_to_281 92.6% 13.6% GKR----ESFQLSRGGQELARLFRAIVLVTTMFDLGGWAITQGSAAMLIA--------IDMADDERFCYETAA------- 53 54126.PPA28486_from_23_to_244 84.8% 15.7% SDVS------------PYLRRAFNCLFVVMLFDVG-RWAMSI-GSLTISLSLEVTEETHAIL-------AFAA------- 54 54126.PPA15623_from_20_to_235 79.7% 11.2% NMR-------------GHEARIFKSLLLILISVIC-GYIGTFAAANVITARFKEIDFKLGVLLDLFFG------------ consensus/100% .....................hhpth.h.................................................... consensus/90% t...................thh+ph.h.hhhhhh.shhhs......h.............h.................. consensus/80% pt.................hphh+pl.h.lhhhlh.sWhhs..hh..h.h.h........hh.........h........ consensus/70% ppp................h+lh+pl.hslhlhlh.sWhhs..hhshlhhths.s.phhthl.........as....... cov pid 401 . . . . : ] 458 1 6239.C13D9.4_from_19_to_274 100.0% 100.0% ----------------------------SLLTSLAYSNTFYVTMWRSKEYRKQFYSVW 2 6239.C13D9.5_from_19_to_274 100.0% 44.9% ----------------------------SFFIVLSYSNTFYVTMWKSGEYRKNFRSVW 3 6239.F26G5.10_from_19_to_274 100.0% 58.2% ----------------------------SFLMSLSYSNTFYVTLWKSKEYRKQFKNIW 4 6239.F07B10.6_from_19_to_277 99.2% 16.9% ----------------------------GFGVNISCSINVIVFYAINSEYRSAIRRLF 5 6239.Y97E10B.3_from_21_to_277 100.0% 37.7% ----------------------------SFFVLLSFSQSFYVIIWKSKEYRQHFKSLW 6 6239.C13D9.6_from_19_to_274 100.0% 46.1% ----------------------------AFFIVLSNSNTFYVTMWKSEEYRKHFRSLW 7 6239.Y97E10B.9_from_21_to_277 100.0% 28.4% ----------------------------VFFALLCYTQPFYVMLWRSSEYRIAFVEMW 8 6239.F58D7.1_from_20_to_289 99.2% 19.5% ----------------------------ILLSLPTFCQNFFVTGLRSPRYAKAYAEQL 9 6239.T19B10.10_from_19_to_276 98.8% 15.7% ----------------------------GIGLNLACVSNVFVFYTINSEYRSAIRKLI 10 6239.F26G5.12_from_19_to_274 100.0% 51.2% ----------------------------SFLTLLSFSNTFYVAIWQSDEYRNNFRLEW 11 6238.CBG08634_from_19_to_273 98.8% 49.2% ----------------------------VFFVCLCYSNTFYVTMMRSKEYRQEFYSVW 12 6239.M01B2.7_from_16_to_269 97.3% 16.5% ----------------------------GTFIFTSSAFNAVVYYKFSRDYRSAVRTML 13 6239.C51E3.5_from_20_to_275 98.0% 17.6% ----------------------------GITVNIAISSNLIIFYTINPEYQLTVKMLM 14 135651.CBN00346_from_22_to_292 100.0% 28.0% --------------VSLGNSLINISDLQLFFVLISYSQFFYVVIWRSPEYRNAFFETW 15 281687.CJA00050_from_22_to_278 100.0% 33.1% ----------------------------VFFVLISYTQFFYVVIWRSPEYRNKFLEMW 16 31234.CRE30968_from_20_to_321 98.4% 14.7% ----------------------------GITVNAAAASNVFVFYSINSEYREVIKALF 17 6239.M01B2.9_from_16_to_272 97.3% 16.3% ----------------------------GVFILSSSSFNAFVYYRISRDYRTAIRAML 18 6239.Y62E10A.4a_from_20_to_282 97.7% 20.4% ----------------------------GWLVIINASLNFFVYLWRNSEYRKAFIRLY 19 135651.CBN26010_from_19_to_274 99.6% 57.2% ----------------------------SLFVCLSYSNTFYVTIWRSKEYREQFYSVW 20 135651.CBN23690_from_19_to_274 100.0% 50.8% ----------------------------SLFIVLSYSNTFYVTIWRSEEYRKQFFRIW 21 31234.CRE30970_from_17_to_275 99.2% 15.3% ----------------------------GITVNFAAASNVFVFYSINSEYREAIQKLF 22 6238.CBG19119_from_20_to_291 98.4% 13.8% ----------------------------GIGVNMACASNFFVFYAINTEYRHAIRRLF 23 6238.CBG09532_from_20_to_295 98.4% 15.4% ----------------------------GITVNFAAASNVFIFYAINSEYREVIKALF 24 135651.CBN29283_from_14_to_296 96.5% 16.1% ----------------------------AIITMPNFCQAFFVTYFRSPRFRKAYREHF 25 6238.CBG08636_from_19_to_274 100.0% 47.7% ----------------------------SVFIALSYSNTFYVTMWKSEEYRKQFLNVW 26 6238.CBG08632_from_19_to_276 100.0% 50.8% ----------------------------ILFVCLSYSNTFYVTMWSSKEYRDQFYSVW 27 31234.CRE30966_from_56_to_346 100.0% 16.2% ----------------------------GITVNIAISSNLFIFYTINPEYQLTVKMLM 28 31234.CRE30969_from_20_to_282 91.0% 14.7% ----------------------------GITVNFAAASNVFVFYAINSEYRAVIQSMF 29 135651.CBN17450_from_19_to_275 100.0% 51.0% ----------------------------NLFLCLSYSNTFYVTMWRCKEYRDHFHSLW 30 6238.CBG27007_from_22_to_278 100.0% 33.9% ----------------------------TFFICLAYSQTFYVILYKSNEYKNAFNNLL 31 31234.CRE05430_from_14_to_320 100.0% 16.6% ----------------------------AIITMPNFCQAYFVTYFRSPRFRKAYREHF 32 6238.CBG08631_from_21_to_242 86.3% 35.8% ----------------------------SFFVLLSFSQTFYVVIWKSKEYRTHFLSLW 33 31234.CRE27496_from_726_to_974 96.9% 45.5% ----------------------------SLFIGLSYSNTFYVTMWKSGEYRKQFLKVW 34 135651.CBN29047_from_20_to_240 85.2% 15.8% ----------------------------GITVNAAAASNVFVFYAINSEYREVIKALF 35 6238.CBG09288_from_19_to_302 98.4% 17.4% ----------------------------FILQLPTFCQNFFVTALRSPRYARAYMEQL 36 135651.CBN23941_from_21_to_237 84.4% 26.1% ----------------------------VFFALLCYTQPFYVILWRSSEYRMAFVELW 37 31234.CRE14827_from_14_to_284 97.3% 15.8% ----------------------------IIIVMPNFCQAYYVTYFRSPRFRKAFREQF 38 31234.CRE18778_from_17_to_272 99.6% 26.5% ----------------------------SMSSMFSYSHTFYTIIWRSADYRKRFIGLY 39 31234.CRE13437_from_22_to_286 99.2% 22.1% ----------------------------VLAQIVAYSQNAYVCYYRSSEYRLLLSEQI 40 6239.C03G6.16_from_18_to_279 96.9% 14.4% ----------------------------GWLVLSNSSLNVFIYFWRTPDYRKAILKLF 41 6239.C39H7.9a_from_22_to_286 99.2% 20.6% ----------------------------VIPAMAAYSQNTYVCFFRSEEYRRLLTEQF 42 6238.CBG19386_from_18_to_280 99.2% 17.7% ----------------------------VIPGLISYSCNFYVYYWRSTDYRNAFIKQL 43 31234.CRE03348_from_55_to_348 98.4% 19.8% NRALPKTRKIVCEIERLKEKEIVRWSAIVIFAAISYSQTFYVYYIRSEMYRKEFKKQM 44 6239.F38E1.8_from_18_to_280 97.3% 18.5% ----------------------------GSLILCNSSMNIFIYFWRTPEYRKAILQFY 45 6239.C39H7.8_from_22_to_286 99.2% 19.5% ----------------------------AIPAMASFSQNACICYFRSSEYRVLLREQI 46 31234.CRE05516_from_18_to_297 98.0% 17.5% ----------------------------GWLVICNSSLHVFIYFWRTPDYRKAIIQLY 47 281687.CJA13446a_from_17_to_254 89.1% 19.2% ----------------------------VIPAMIAYCQNAYVCFFRSEDYRRLLTNQM 48 54126.PPA23244_from_16_to_258 91.0% 20.7% ----------------------------VLFALAAYSLTYYIHFLISREYRRAFLSNF 49 54126.PPA27165_from_20_to_272 94.1% 13.1% ----------------------------CLFVNTGVAVKAIVYYSIASDYRKAIRAFL 50 54126.PPA11511_from_23_to_234 80.5% 13.7% -----------------------------LFVNTSLVLNYFVYYKTSTEYRSAFRRHI 51 54126.PPA26795_from_20_to_276 95.3% 11.2% -----------------------------IPVNISLATNYLVYYATSSDYRRVFKGQI 52 54126.PPA28485_from_21_to_281 92.6% 13.6% ----------------------------RIAVNFGVAVKFIVCYSTSSEYREAVNQRF 53 54126.PPA28486_from_23_to_244 84.8% 15.7% ----------------------------GIFVHVGIASKALIYYSISDEYRKAFRNVF 54 54126.PPA15623_from_20_to_235 79.7% 11.2% -----------------------------IPINISLAANYMVYYATRPHI------LF consensus/100% ..................................s.s..hhhhh..t..h.......h consensus/90% .............................h.h..s.s.thhlhhhhs.cY+..h.t.h consensus/80% ............................shhh.hshs.shaVhhhhs.-YRpthht.h consensus/70% ............................shhs.huhupshaVhhhpopEYRpthhpha