cov pid 1 [ . . . . : . . . 80 1 gi|1706532|sp|P 100.0% 100.0% TFHDQIAMLSHRCFN-----TLTNSFQPSLL-GRKILAAIIMKKDSED----------------------MGVVVSLGTG 2 gi|7770273|gb|A 99.5% 66.0% TIHDHIAMLSHQRFN-----ALTARIQHSLL-GRKILATIVMRNGTDS----------------------LGKVVSLGTG 3 gi|1814270/1-41 96.1% 36.5% DFADSVSQLVTQKFR-----ELTVGLTSVYA-RHKTLAGIVMTKGLDT---------------------KQAQVIVLSSG 4 gi|7498162|pir| 79.9% 20.5% ---------MTEYYQI----PPS-----------NLFAAFLLVNAQ-----------------------EEKRVLAMGSS 5 gi|7798622|gb|A 96.1% 37.2% VLADAVSRLVVDKFS-----ELTDHFSSPHA-RRKVLAGVVMTTGTDV---------------------KEAQVICISTG 6 gi|7798626|gb|A 95.8% 37.2% DFADSIFHMVREKYR-----SLVGGCSPAHA-RHKSLAGIVMTRGLDL---------------------RHAQVVALSTG 7 gi|4164311|emb| 95.6% 33.6% IHADTIGRLVLEKFM-----EVIK-GQEAYS-RRKVLAGIVMTENMNFCEAKVSPQPAKHCETNYNAKPILDQVISVSTG 8 gi|3025277|sp|Q 91.9% 31.8% ------MYPFYYHF------RLCKNNALIYG-FEKVIASVFLKIN------------------------GNLQIIALSTG 9 gi|6678283|ref| 92.7% 25.4% VQYAKISQLLKETFG-----QLISNHSQYLK-CSSSLAAFIIER------------------------AGHHEVVAIGTG 10 gi|6288982|gb|A 93.2% 23.5% PTVKEIAELCLKKFE-----SLPKTGKPTAN-QWTILAGIVEFNRNT----------------------EACQLVSLGCG 11 gi|6912230|ref| 96.6% 20.4% WTADEIAQLCYEHYGI----RLPKKGKPEPNHEWTLLAAVVKIQSPAD----------KACDTPDKPVQVTKEIVSMGTG 12 gi|8671846|gb|A 97.1% 22.9% DWGKTVSEKVISAYM-----SLPKKGKPQGR-EVTVLSAFLVSSPS-----------------------QDPKVIALGTG 13 gi|6321194|ref| 93.2% 16.3% KLGEEISTRVINEYSKLKSACRPIIRPSGIR-EWTILAGVAAINRDGGA--------------------NKIEILSIATG 14 gi|7492552|pir| 91.1% 18.1% NVGNLIALAVLNKFDELARHGKPIIRANGVR-EWTTLAGVVIQKKME----------------------NEFICVCLATG consensus/100% ..........h..a....................p.hushh................................hlshusu consensus/90% ..........hpta......th............p.lAuhhh.p.............................llshuoG consensus/80% ..ht.l..hhhppa......ths..ht..h..t.phLAuhlh.pt..........................hpllsluoG consensus/70% .htcplu.hshpcat.....pLstthp..ht.phplLAullhpps.t......................tptplluluTG cov pid 81 . 1 . . . . : . 160 1 gi|1706532|sp|P 100.0% 100.0% NRCVKG--DSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQT-------------AKDSIFEPAKGGE----KLQI 2 gi|7770273|gb|A 99.5% 66.0% NRCVKG--EELSLRGDTVNDCHAEIISRRGFIRFLYSELMKHWESP-------------GDETIFELAGDG-----ELKI 3 gi|1814270/1-41 96.1% 36.5% TKCISG--EHISDQGLVVNDCHAEIVARRAFLHFLYTQLELHLSKH----------QEDPERSIFIRVKEG-----GYRL 4 gi|7498162|pir| 79.9% 20.5% IQYIVEPDTLSGANGTSLLHLDAIILARRAMLKAFIHELSTVDSEC----------------SIFEKKEEG-----KAAL 5 gi|7798622|gb|A 96.1% 37.2% TKCING--EYMSDRGLALNDCHAEIIARRSLIRYLYSQLEFFLSNN----------KEDHQKSIFVHCEKG-----GYRL 6 gi|7798626|gb|A 95.8% 37.2% TKCING--EYLSDHGLVVNDCHAEVTARRALLRFLYSQLEFFLR------------PEDWEESIFVRHKER-----GYRL 7 gi|4164311|emb| 95.6% 33.6% TKCVSG--EHMSVNGAVLNDSHAEIVSRRCLLKYLYAQLDLQCNQ------------ATAYQSIFVRNTDGQY---PYKL 8 gi|3025277|sp|Q 91.9% 31.8% NKGLRG--DKIVNDGTALIDCHAEILARRGLLRFLYSEVLKFSTE--------------PPNSIFTKGKNA------LVL 9 gi|6678283|ref| 92.7% 25.4% EYNYS---QCIKPNGRVLHDTHAVVTARRSLLRYFYRQLLLFYSKN----------PAMMEKSIFCTEPASN----LLTL 10 gi|6288982|gb|A 93.2% 23.5% TKCIGE--SKLCPNGLILNDSHAEVLARRGFLRFLYQELKQ--------------------DRIFHWNSTLS----TYDM 11 gi|6912230|ref| 96.6% 20.4% TKCIGQ--SKMRKNGDILNDSHAEVIARRSFQRYLLHQLQLAATLK--------------EDSIFVPGTQKG----VWKL 12 gi|8671846|gb|A 97.1% 22.9% TKCVSG--SLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKSNEAKRQRIDSETSSILESADSSCPGEVKYKL 13 gi|6321194|ref| 93.2% 16.3% VKALPDS-ELQRSEGKILHDCHAEILALRGANTVLLNRIQNYNPSSG--------------DKFIQHNDEIP---ARFNL 14 gi|7492552|pir| 91.1% 18.1% VKCTPAGIIKNEQLGSVLHDCHAEILALRCFNRLLLEHCILIKESK--------------KDTWLLEVADNG----KFTL consensus/100% ...h..........G..l.c.cA.lhuhRsh.phhhtph.......................phh....t.......h.h consensus/90% .psh.t..p..t.pG.hl.DsHA.lhuhRsh.+hhhppl......................pphh...tt.......htl consensus/80% s+sl.t..ph.p.pG.hlpDsHAElluRRuh.+hhhppl.hh...................poIh..ttpt......hpl consensus/70% sKClss..phhsspGtslpDsHAEllARRuhlRaLYppL.hh.pp................cSIF.pspps.....thpL cov pid 161 . . . 2 . . . . 240 1 gi|1706532|sp|P 100.0% 100.0% KKTVSFHLYISTAP-CGDGALFDKSCSDRAMESTE--------------------------------------------- 2 gi|7770273|gb|A 99.5% 66.0% KSDITFHLYISTAP-CGDGALFDKSCSEAAELNGS--------------------------------------------- 3 gi|1814270/1-41 96.1% 36.5% RENILFHLYVSTSP-CGDARLNSPYEITIDLN------------------------------------------------ 4 gi|7498162|pir| 79.9% 20.5% KPNLRLVLYSNYSPPCIHAVDDAATK------------------------------------------------------ 5 gi|7798622|gb|A 96.1% 37.2% KDNVQFHLYISTSP-CGDARIFSPHEAGVEDQ------------------------------------------------ 6 gi|7798626|gb|A 95.8% 37.2% RDNVHFHMYISTSP-CGDGRLNSPYEITSDIH------------------------------------------------ 7 gi|4164311|emb| 95.6% 33.6% KSGVHFHLYINTAP-CGDARIFSPHENDTG-------------------------------------------------- 8 gi|3025277|sp|Q 91.9% 31.8% KPGISFHLFINTAP-CGVARIDKKLKPGTS-------------------------------------------------- 9 gi|6678283|ref| 92.7% 25.4% KQNYNLYLYMNQLP-KGSAQIKSQLRLNPH-------------------------------------------------- 10 gi|6288982|gb|A 93.2% 23.5% DEHVEFHFLSTQTP-CGDACILEEEQPAAR-------------------------------------------------- 11 gi|6912230|ref| 96.6% 20.4% RRDLIFVFFSSHTP-CGDASIIPMLEFEDQPCCPVFRNWANNSSVEASSNLEAPGNERKCEDPDSPVTKKMRLEPGTAAR 12 gi|8671846|gb|A 97.1% 22.9% KSGCLLHLYISQLP-CGYASTSSPLYALKKIPSTQVD------------------------------------------- 13 gi|6321194|ref| 93.2% 16.3% KENWELALYISRLP-CGDASMSFLNDNCKND------------------------------------------------- 14 gi|7492552|pir| 91.1% 18.1% NSNLLIHLYVSECP-CGDASMELLASRLEN-------------------------------------------------- consensus/100% p.th.hhhh.s..P.ph.u............................................................. consensus/90% c.sh.hhha.sp.P.CG.uth....p...t.................................................. consensus/80% +psh.hhha.sp.P.CGsuth....p...t.................................................. consensus/70% +pslphHLYlopsP.CGDApl.s.hp.ttp.................................................. cov pid 241 : . . . . 3 . . 320 1 gi|1706532|sp|P 100.0% 100.0% -------------------------------------SRHYPVFENPKQGKLRTKVENGEGTIP-----VESSDIVPTWD 2 gi|7770273|gb|A 99.5% 66.0% --------------------------------------GHMPLFENIKQGKLRTKVENGEGTIP-----VESSDIVPTWD 3 gi|1814270/1-41 96.1% 36.5% -------------------------------------SSKHIVRKF--RGHLRTKIESGEGTVP-----VRGPSAVQTWD 4 gi|7498162|pir| 79.9% 20.5% --------------------------------------------------KLSYVTPTNLTCVP---------DDVLTYE 5 gi|7798622|gb|A 96.1% 37.2% -------------------------------------GDRHPNRKA--RGQLRTKIESGEGTIP-----VRSSNTIQTWD 6 gi|7798626|gb|A 95.8% 37.2% -------------------------------------SSRHLMRKH--RSHLRTKIESGEGTVP-----VRSRGPVQTWD 7 gi|4164311|emb| 95.6% 33.6% -------------------------------------VDKHPNRKA--RGQLRTKIESGEGTIP-----VKSSDGIQTWD 8 gi|3025277|sp|Q 91.9% 31.8% -----------------------------------------DDLQN--SSRLRFKIDKGMGTVLGG---ASEFEAPQTFD 9 gi|6678283|ref| 92.7% 25.4% -------------------------------------------------SISAFEANEELSLHVAV--EGKIYLTVYCSA 10 gi|6288982|gb|A 93.2% 23.5% --------------------------------------AKRQRLDEDSEMVYTGAKLISDLSDDPM-----LQTPGALRT 11 gi|6912230|ref| 96.6% 20.4% EVTNGAAHHQSFGKQKSGPISPGIHSCDLTVEGLATVTRIAPGSAKVTDVYRTGAKCVPGEAGDSGKPGAAFHQVGLLRV 12 gi|8671846|gb|A 97.1% 22.9% -------------------------------------DSLLVQASDICSSRHSDVPEIGSNSNKGN--GSQVADMVQRKP 13 gi|6321194|ref| 93.2% 16.3% -------------------------------------DFIKIEDSDEFQYVDRSVKTILRGRLN-----FNRRNVVRTKP 14 gi|7492552|pir| 91.1% 18.1% ---------------------------------------------NKPWNLTVDSEKLMRGRAD-----FGLLGIVRTKP consensus/100% .............................................................................h.. consensus/90% ....................................................t.......tt...........t.h.hhs consensus/80% ..................................................hhp.hhp...sphs......t..t.s.phs consensus/70% .......................................hh...pt..pshhpsthp.spushs.....sp..ssl.Ths cov pid 321 . . : . . . . 4 400 1 gi|1706532|sp|P 100.0% 100.0% GIRLGERLRTMSCSDKILRWNVLGLQGALLTHFLQ-PIYLKSVTLG-------YLFSQGHLTRAICCRVTRDGS---AFE 2 gi|7770273|gb|A 99.5% 66.0% GIQHGERLRTMSCSDKILRWNVLGLQGALLTHFIH-PIYLHSITLG-------YLYSHGHLTRAVCCRLSKDGD---TFK 3 gi|1814270/1-41 96.1% 36.5% GILLGEQLVTMSCTDKIASWNVLGLQGALLCHFIE-PVYLHSIIVG-------SLHHTGHLARVMSHRMEG--------I 4 gi|7498162|pir| 79.9% 20.5% QIKETKSLRVHCTADKLFKWNTLGIQGALLSNVLH-PIFIDNIFFGS-----EAPVSDESLSYALQGRLGPNENEREIIV 5 gi|7798622|gb|A 96.1% 37.2% GVLQGERLLTMSCSDKIARWNVVGIQGSLMSYFTE-PIYFSSIILG-------SLYHADHLSRAMYQRIAD--------I 6 gi|7798626|gb|A 95.8% 37.2% AILQGEQLITMSCTDKITRWNILGLQGALLSHFVE-PVYLHSVTIG-------SLRHTGHLGRVLNQRLER--------L 7 gi|4164311|emb| 95.6% 33.6% GVLQGQRLLTMSCSDKIARWNIVGIQGSLLSSIIE-PVYLHSIVLG-------SLLHPEHMYRAVCGRIEKS-------I 8 gi|3025277|sp|Q 91.9% 31.8% GIMMGERMRTMSCSDKLLRANVLGVQGAILSHFID-PIYYSSIAVA-------ELNNADRLRKAVYSRAAT--------- 9 gi|6678283|ref| 92.7% 25.4% DGV--NRVNSMSSSDKLTRWEVLGVQGALLSHFIQ-PVYISSILVGD-----GNCNDTRGLEIAINQRVDD------ALT 10 gi|6288982|gb|A 93.2% 23.5% KPGRGERTLSMSCSDKIARWNVIGVQGALLDVLISKPIYFSSLNFC------CDDAQLESLERAIFKRFDCR-------- 11 gi|6912230|ref| 96.6% 20.4% KPGRGDRTRSMSCSDKMARWNVLGCQGALLMHLLEEPIYLSAVVIGK------CPYSQEAMQRALIGRCQNV-------- 12 gi|8671846|gb|A 97.1% 22.9% GRG--ETTLSVSCSDKIARWNVLGVQGALLYQVLQ-PVYISTITVGQSLHSPDNFSLADHLRRSLYERILP-------LS 13 gi|6321194|ref| 93.2% 16.3% GRYDSNITLSKSCSDKLLMKQRSSVLNCLNYELFEKPVFLKYIVIPN-----LEDETKHHLEQSFHTRLPN--------L 14 gi|7492552|pir| 91.1% 18.1% GRPDAPVSWSKSCTDKLAAKQYLSILNSQTSLICE-PIYLSCVVLY------KKVIVKSAIDRAFGPFGRCAPLAEF--- consensus/100% t........shsssDKhh.hph.uh.ss....hhp.Plahp.l.h.............tth..sh..hh........... consensus/90% t....p.hhohSsoDKlhthphlul.sulh..hhp.Plahpslhhs............tththsh.tRh........... consensus/80% thh.spphhohSCoDKlhphphlGlQGuLh..hhp.PlYhpslhls.......t..ptttltpuh.tRhtt......... consensus/70% uhh.ucphhoMSCSDKlhRWNlLGlQGALLsphlc.PlYlpolslG.......phhptppLpRAlhpRhts......... cov pid 401 . . . . : . . . 480 1 gi|1706532|sp|P 100.0% 100.0% DGLRHPFIVNHPKVGRVSIYDS-------KRQSGKTKET------SVNWCLADGY--DLEILDGTRGTVD-------GPR 2 gi|7770273|gb|A 99.5% 66.0% SSLPANFTLNHPEVGRVSVYDS-------TRHTSKTKES------SVNWSQPDQY--SVEVLDGTKGKLD-------SPK 3 gi|1814270/1-41 96.1% 36.5% GQLPASYRQNRPLLSGVSNAEA--------RQPGKSPHF------SANWVVGSAD---LEIINATTGKR---------SC 4 gi|7498162|pir| 79.9% 20.5% ESMPVQMRMHMGI--------------------------------SHLWHRGVDS---VETLDYNTGRT---------SK 5 gi|7798622|gb|A 96.1% 37.2% EDLPQQFTLNRPLLSGISNAEA--------RQPGKAPNF------SVNWTVGDQG---LEVINATTGKD---------DM 6 gi|7798626|gb|A 95.8% 37.2% GPLPTTHRRNQPLLSGLSSADY--------QQHGKASCV------SINWTLGDTQ---VEVVNTATGRRR--------ET 7 gi|4164311|emb| 95.6% 33.6% QGLPPPYHLNKPRLALVTSAEP--------RNQAKAPNF------GINWTIGDTE---LEVVNSLTGRT---------IG 8 gi|3025277|sp|Q 91.9% 31.8% FKPPAPFHVQDVEIGECQVEDT----EQSTSAAARSTIS------SMNWNLADGN---TEVVRTSDGMVHDKDM-SGADI 9 gi|6678283|ref| 92.7% 25.4% SKLPMFYLVNRPHISLVPTAYP-------LQINLDHKSL------SLNWAQGDNS---LEIVDGLNGKITESSP-FKSGL 10 gi|6288982|gb|A 93.2% 23.5% TFKHTRFQPQRPQINIDPGIRFEFSQ---RSDWQPSPN-------GLIWSQVPEE--LRPYEISVNGKRQGVTKKKMKTS 11 gi|6912230|ref| 96.6% 20.4% SALPKGFGVQELKI-LQSDLLFEQSRSAVQAKRADSPGRLVPCGAAISWSAVPE----QPLDVTANGFPQGTTKKTIGSL 12 gi|8671846|gb|A 97.1% 22.9% DELLTSFRLNKPLFFVAPVPPSEFQ----HSETAQATLTC-----GLVFNTLPHM-TCVSFLCFLKGGVI-------YLL 13 gi|6321194|ref| 93.2% 16.3% DNEIKFLNCLKPF----------YDDKLDEEDVPGLMC-------SVKLFMDDFS-TEEAILNGVRNGFY------TKSS 14 gi|7492552|pir| 91.1% 18.1% -GEKDNPYYFHPFTVLETDENFLYSRPLNQAEKTATST-------NVLIWIGDKMQCTQVIHNGIKAGTKAKDV-----E consensus/100% .............................................sh.h...s.......h....psh............ consensus/90% ......h...ps..................t..............uh.h..sst......h....puh............ consensus/80% tt....hhhpcs.h................tt..tt.........uh.a..sst......hhsshpGth........... consensus/70% pth.t.aphp+Phlsh.ss...........pp.sps.p.......ulsWshssp....hpllssspGth.........sh cov pid 481 . 5 . . . . : . 560 1 gi|1706532|sp|P 100.0% 100.0% NELSRVSKKNIFLLFKKLCSFRYRRDLLR---------LSYGEAKKAARDYETAKNYFKKGLKDMGYGNWISKPQEEKNF 2 gi|7770273|gb|A 99.5% 66.0% MEVSRVSKSNLFRLFHALCQRAGRADLLAL--------QSYAHAKMAATSFQEAKRLFFLALSQHGYGAWIGKPLEEKSF 3 gi|1814270/1-41 96.1% 36.5% GGSSRLCKHVFSARWARLHGRLSTRIPGHGDTP-----SMYCEAKRGAHTYQSVKQQLFKAFQKAGLGTWVRKPPEQDQF 4 gi|7498162|pir| 79.9% 20.5% GSPSRVCKAEIFEAYRKLNGVDQAV-------------VNYAKAKEMASEYQYEKKVFYEKLEAAGLGKWQTKPAELVDS 5 gi|7798622|gb|A 96.1% 37.2% GRASRLCKNALYSRWVRLHSKLSSILSNKMLKP-----SSYHEAKQVASEYHSAKQALIKAFHKAGLGAWVKKPIEQDQF 6 gi|7798626|gb|A 95.8% 37.2% GTPSRLCKHALFTRWSRLHRKLGAHAPSSCDHQ-----LMYIEAKMAARPYQTVKQQWFRSLQETGFGTWVKKPPEQEQF 7 gi|4164311|emb| 95.6% 33.6% GQVSRITKQAFFVKYGFLMANLPGILVRKVT-------TDYGQTKANVKDYQIAKLELFSAFKREDLGSWLKKPIEQDEF 8 gi|3025277|sp|Q 91.9% 31.8% TTPSRLCKKNMAELMITICTLTKTSVDYP---------ISYEELKAGSQEYAAAKKSFITWLRQKDLGIWQRKPREFQMF 9 gi|6678283|ref| 92.7% 25.4% SMASRLCKAAMLSRFNLLAKEAKTDDLLEA--------RTYHAAKCMSGPYQEAKALLKAYLQQHGYGSWIVKSPCIEQF 10 gi|6288982|gb|A 93.2% 23.5% QAALAISKYKLFLTFLELVKFNPKLSEMFDQQLSDPERIAYASCKDLARDYQFAW----REIKEKYFLQWTKKPHELLDF 11 gi|6912230|ref| 96.6% 20.4% QARSQISKVELFRSFQKLLSRIARDKWPHSLRVQKL--DTYQEYKEAASSYQEAW----STLRKQVFGSWIRNPPDYHQF 12 gi|8671846|gb|A 97.1% 22.9% ALRYSLCWNYSGLHEVILGTTGRKQG------------TSAKGALYPSTQSSICKQRLLELFLKETHGHKRESSKSKKSY 13 gi|6321194|ref| 93.2% 16.3% KPLRKHCQSQVSRFAQWELFKKIRPEYEG---------ISYLEFKSRQKKRSQLII---AIKNILSPDGWI--PTRTDDV 14 gi|7492552|pir| 91.1% 18.1% KSQTLICRKSMMNLLHQLSQSLTN--------------KNYYEWKKLNIKRCQQKQ---ILRNILK--NWI--PNGGNEF consensus/100% .....hs................t................h.thh......t..h......h.......h...s.t.... consensus/90% t...tlsp..h..hh..l.t...t................Y.thK..st.hp..h......hp.....tW...s.p..ph consensus/80% t..ppls+tthh.hh.hLht.h.t...............sYhphK.hspphp.hh....thhpt.shstWh.pP.p.ppa consensus/70% tt.S+lsKpthhthattLtpphtp..............hsYtcsKthuppYptsKt.hhphhpptshGsWlpKP.-.cpF cov pid 561 ] 561 1 gi|1706532|sp|P 100.0% 100.0% Y 2 gi|7770273|gb|A 99.5% 66.0% E 3 gi|1814270/1-41 96.1% 36.5% L 4 gi|7498162|pir| 79.9% 20.5% F 5 gi|7798622|gb|A 96.1% 37.2% T 6 gi|7798626|gb|A 95.8% 37.2% L 7 gi|4164311|emb| 95.6% 33.6% G 8 gi|3025277|sp|Q 91.9% 31.8% T 9 gi|6678283|ref| 92.7% 25.4% S 10 gi|6288982|gb|A 93.2% 23.5% N 11 gi|6912230|ref| 96.6% 20.4% K 12 gi|8671846|gb|A 97.1% 22.9% R 13 gi|6321194|ref| 93.2% 16.3% K 14 gi|7492552|pir| 91.1% 18.1% Q consensus/100% . consensus/90% . consensus/80% . consensus/70% t