Family alignment for the AP3B1_C domain, displayed in

                                                           cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 44689.DDBDRAFT_0167983_from_806_to_945               100.0% 100.0%     DDFDELFGITNDDNNQTA-----NGIGGGG------------SGEEEMDKFDFE--------NYINS-------TTKSVK    
 2 3218.JGI183108_from_764_to_906                        91.4%  15.8%     SDRDLDSWLDSQDVEAKG----------------YSQT----ADPSSLLGYASI---------SLGP-------LNPVLS    
 3 4558.Sb07g001660.1_from_794_to_933                    89.3%  14.5%     SKSALESWLD--EAPPEP----------------VVQN----LTQTSSARVSFT--------NLNFE---------RKPK    
 4 15368.BRADI2G62270.1_from_786_to_942                  92.9%  14.6%     VEDNLSSLISTD--------LTELMSKSALESWLDEAP----ALPAVQESMQKS--IARV--SFTNR------SFERKPK    
 5 3694.estExt_Genewise1_v1.C_LG_X2139_from_679_to_821   89.3%  17.3%     SKRSLETWLDAQ--------------PGLS----ILSTSEQSQLRKSSARISIR--------DISSR---------VKPK    
 6 59689.fgenesh1_pg.C_scaffold_5002027_from_796_to_940  93.6%  16.0%     SKKALDLWLDDQ---PST----SNQTPSALN-----------SNQSSYAKISIG--------DIGSR---------VKPK    
 7 164328.JGI73678_from_812_to_951                       91.4%  13.4%     KPVNAFDPLDLLG-SPSG--VTPANPPMHAFAPMAPSAGSASNLLGDLMSLSVS--------SSTTP-----------PP    
 8 6945.ISCW005629-PA_from_763_to_908                    96.4%  17.2%     SRKNVDLLLDLDDIATVS--SAPLQPFSALTM--TSVP----IAAPKPSGPKFA--------VVPVP-------AYVSHE    
 9 10228.JGI30877_from_739_to_882                        89.3%  15.1%     KKVN----------TPPPANNAPSYAPIIDSN--ILAP----VDYAAAEVISKP-ERSTTMPSFVPS--------SLPRQ    
10 99883.ENSTNIP00000011283_from_799_to_946              96.4%  18.3%     REKKEMSLLDLDDFEPAS---SPQVTPVNS----YLSS----SLVTDLEGLSLS--DAVLSPATISP--------SSALK    
11 13616.ENSMODP00000002419_from_815_to_961              95.0%  18.2%     PKPKEISLLDLEDFTPPS--IQPVSPPR------VVSN----SLVTDLEGLTLT--DSSLAPSLLSP-------VMGPGK    
12 9986.ENSOCUP00000005580_from_767_to_913               95.0%  18.8%     PAAKEVSLLDLEDFTPPS--VQPVSPPT------VVSA----SLAADLEGLTLT--DTSLVPSLLSP--------VSGVR    
13 9823.ENSSSCP00000001974_from_793_to_947               95.0%  19.2%     PLAPENLSFNIEEFNWRANLCQPVSSPA------VVST----SLAADLEGLTLT--DSPLAPSLLSP--------VSGVG    
14 9258.ENSOANP00000021088_from_741_to_888               95.7%  17.5%     KGPKEISLLDLDDFTPPC--VQSIPTPQ------VVST----SLVTDLEGLTLT--DSTLAPTLLSP-------GLSAGK    
15 9031.ENSGALP00000003331_from_778_to_925               97.1%  20.4%     AGPKEISLLDLDDFTPPP----PQPVPSSS----IIST----SLVTDLEGLTLT--DTSLAPALLSP-------AFGAVR    
16 28377.ENSACAP00000011960_from_773_to_920              95.7%  19.5%     KGSKEISLLDLDDFSPPP--SQPVTTSP------IVST----SLVTDLEGLTLT--DTTLAAAIISP-------VFGAVK    
17 7739.JGI102900_from_808_to_961                        97.1%  17.1%     EAKQEVSLLDLDDIDMSS-TSAPVPAPASALD--VLSP----SLASDLQGLSINDKKDTAI-SVTTP-------MFVSTT    
18 8090.ENSORLP00000002945_from_817_to_962               96.4%  19.2%     KSKKEVSLLDLDDFSPVV-----TNAPKPS----VISS----SLLSDLEGLSLS--NVSSAVQVTSP-------SFGPVK    
19 9031.ENSGALP00000006987_from_817_to_964               97.1%  20.4%     PNKQDVFLLDLDDFYPVT---TPVAVPAAA----ILSP----SLTADLEGLSLS--GSPVI-DVTTQ-------VFVPTK    
20 9823.ENSSSCP00000014994_from_807_to_954               96.4%  19.0%     PLTKDVSLLDLDDFNPVS---TPVALPVP-----ALSP----SLIADLEGLNLS-ASSSVI-SVSTP-------VFVPMT    
21 9258.ENSOANP00000004914_from_776_to_923               96.4%  20.9%     PGQKEISLLDLDDFNSVS---TPVAVPTP-----ALSP----HLIADLAGLNLS-GSSPVI-NVSTP-------VFVPMK    
22 28377.ENSACAP00000007503_from_818_to_965              97.1%  19.7%     ATKQEMSLLDLDDFNPVS---APTVLPRSS----ILSP----TLTADLEGLNLS--SSSVI-NVSTP-------VFVPMK    
23 7668.XP_001201562_from_442_to_601                     97.1%  15.2%     KAESTMQLLDFGDFGPPGESSQPVTPAGPTS---MLTP----TLAKDLQGLSLS--DKPLVRTLVTPIECAGGVMFPSKE    
24 51511.ENSCSAVP00000012072_from_812_to_957             95.0%  18.3%     RKKETVNLLDLDDFSPPS--VSPSKSSTS-----LLTP----MLASDLQGLSLG--GANHV-EMAGT---------SSGK    
25 7719.ENSCINP00000018007_from_781_to_927               95.7%  17.0%     KKKDIINLLDLDDFSPPT--VSPSKTPSNGG---LLAP----MLASDLQGLSLG---GNVS-EMSGT---------FNGK    
26 121224.XP_002427262_from_786_to_929                   93.6%  17.6%     TKTNLDLLLELNDALPST---APVLTPSLGG---FTNN---------ASSVSHT--KVQSI-ETVGP-------SYVSYK    
27 7070.XP_970593_from_737_to_877                        95.7%  23.1%     PKSNLDLLLDLGDVDSTA----PVMTPSLGG---FLTP----SVVSTTPSQV----------EMTPP-------VFTNTK    
28 7425.XP_001605478_from_812_to_956                     96.4%  24.7%     PKSNLDLLLDLDDVVPMT----PIMTPSLGG---FLTP----IMPSPAFATASD-----GIREVSTS--------FIPVK    
29 7460.XP_624446_from_774_to_913                        92.9%  20.0%     PKSNIDLLLDLDDVIPMT----PIMPLSTGG---LLTPINL-NITNDIREVSAS---------------------FTPIR    
30 7227.FBpp0070670_from_868_to_1019                     97.1%  17.9%     VKSNLDLLLDLDDIPPIG----PVMTPSLGG---FLTPGTP-MMAGQAAPLQPQ--HARNRVELVGP-------SHIEFK    
31 7159.AAEL009039-PA_from_808_to_953                    97.1%  20.0%     QKSNLDLLLDLDDIPPVG----PIMTPSLGG---FLTP----MTGTITDNQTLS----NVI-DLVGP-------SYIPNK    
32 7176.CPIJ009748-PA_from_819_to_964                    97.1%  20.7%     EKHDLDLLLDLNDIPPVG----PIMTPSLGG---FLTP----MVGTHPENASSN----DVV-DLVGP-------SFIPTK    
   consensus/100%                                                         ................................................................................    
   consensus/90%                                                          .t.p...hls.t.....s................h.ts.......t...ths.t........th.s.............p    
   consensus/80%                                                          .ttp...hLDhp-h.s.s....s..ss.......hhss.....h.sshtshshs........ph.ss..........shc    
   consensus/70%                                                          .tpp...LLDLsDhsPss....P..sPs......hlos.....hhsshpulshs........shhss.........hsh+    

                                                           cov    pid  81          .         1         .         .         .         .         :         . 160
 1 44689.DDBDRAFT_0167983_from_806_to_945               100.0% 100.0%     KILLKPTISG-GLSIDYCFIRIRDNEEFSCQPRYNIIQLNIKNQSDETFTDISIINKNLIDGADISE-------------    
 2 3218.JGI183108_from_764_to_906                        91.4%  15.8%     KITLLDYTNGDGLDVKYTYVR----EPAICSQEMVCLRLYFFNRSGDPMLKISVKGMEEPASVDNADQAGV--TSEGRK-    
 3 4558.Sb07g001660.1_from_794_to_933                    89.3%  14.5%     LHTLLDSSGSNGLSALYAFSS----EVSPRSRLLVCVDLYFENVTTQQLTDITIEAEEASSSVDSIDQ-----TSEGSSG    
 4 15368.BRADI2G62270.1_from_786_to_942                  92.9%  14.6%     LHTLLDPSNTSGLSVIYAFSA----EISPISRLLVCIDLFVENNTTDQLTDIIIKSEEASISKDEMDQ-----TSEGSAS    
 5 3694.estExt_Genewise1_v1.C_LG_X2139_from_679_to_821   89.3%  17.3%     SYRLLDPANGNGLKVDYSFSP----EISSISPLLVSVEVSFENCTDETISEVALVDEESSKASDSSE------SSPSHKD    
 6 59689.fgenesh1_pg.C_scaffold_5002027_from_796_to_940  93.6%  16.0%     SYSLLDPGNGSGLKVGYTFLS----EVSTVSPLHVCVEVLFENSSAEPILEVNLEDEESMKVADSSEQTLVGKANASYNN    
 7 164328.JGI73678_from_812_to_951                       91.4%  13.4%     RHELLSSLAGNGLDVHYAFLR----QPSTHSPGMNVIQLWLANNSSEPISRVQVVGKNPQQVVS----------------    
 8 6945.ISCW005629-PA_from_763_to_908                    96.4%  17.2%     RKELLNKLSGSGLSVSYRFSR----SPNIFSPRMTSIELVLTNHGDKELQELYVPDRK-SGQVEIKG-------------    
 9 10228.JGI30877_from_739_to_882                        89.3%  15.1%     SFDLLTSAGGQGLAAVYRFTR----SPSLHGSNFVSVEITFTNHSQRAIRNIGIKDKKLQADMIIRE-------------    
10 99883.ENSTNIP00000011283_from_799_to_946              96.4%  18.3%     NYELLHRITGEGLSVEYCFSR----QPFSPDANMVAVQMQFTNNGAADTKGLHMEDVKLQSGMRVKE-------------    
11 13616.ENSMODP00000002419_from_815_to_961              95.0%  18.2%     RQELLHRVAGEGLSVEYVFSR----QPFP-GPHMVSVCIHFSNSSDTPVKGLHVGVPHQQSGIRIQE-------------    
12 9986.ENSOCUP00000005580_from_767_to_913               95.0%  18.8%     RQELLHRVAGEGLAVDYAFSR----QPFSGDPHMVSVHIYFSNSSDTPIKGLHVGTPKLPAGLSIQE-------------    
13 9823.ENSSSCP00000001974_from_793_to_947               95.0%  19.2%     RQELLHRVAGEGLAVDYTFSR----QPFSGDPHMVSVHIHFSNSSDTPIKGLHVGTPKLPAGISIQE-------------    
14 9258.ENSOANP00000021088_from_741_to_888               95.7%  17.5%     TYELLHRMTGEGLSVEYFFSR----QPFPTDPHMLAVHIQFSNNTDAEVKSLRVHEPKLQSGMRIQE-------------    
15 9031.ENSGALP00000003331_from_778_to_925               97.1%  20.4%     TYELLHRMAGEGLSVEYCFSR----RPFPGDPHMVAVQIQISNNTDAEVKSLRVSEPKLLAGMRIQE-------------    
16 28377.ENSACAP00000011960_from_773_to_920              95.7%  19.5%     TYELLHRMTGEGLSVEYYFSR----QPFPPDSRMVAVQIQISNNTAAEVKNIRVSEPKLLSGMRVQE-------------    
17 7739.JGI102900_from_808_to_961                        97.1%  17.1%     SHELLHRMTGEGLAANYRFTR----GTCIYSTSMVPVEVTFTNHTDSPVCNIRIGDKKLQAGMTLQE-------------    
18 8090.ENSORLP00000002945_from_817_to_962               96.4%  19.2%     TYELLHHMTGKGLAAKYHFPR----QPCLYQPSMVSVQVILTNNSDHALEEIHIGERS-PASLNVHC-------------    
19 9031.ENSGALP00000006987_from_817_to_964               97.1%  20.4%     MHEMLHRMTGKGLSAHYQFSR----QPCIFGDRMVSVQVTLTNTSDQKIENIHIGEKKLPPGMRMHE-------------    
20 9823.ENSSSCP00000014994_from_807_to_954               96.4%  19.0%     THVLLHRMSGKGLAAHYSFPR----QPCIFGDKMVSVQITLNNTTDRKIENIHIGEKKLPMGMQMHV-------------    
21 9258.ENSOANP00000004914_from_776_to_923               96.4%  20.9%     THELLHRMSGKGLAAQYHFPR----QPCIYGHQMVSIQVMLTNTTDQKIENIHIGEKKLPAGLQMHV-------------    
22 28377.ENSACAP00000007503_from_818_to_965              97.1%  19.7%     THELLHRMSGKGLAAHYHFSR----QPCIYNEEMVSVQVTLTNTNDQKMENIHLDEKKLPAGMKVHM-------------    
23 7668.XP_001201562_from_442_to_601                     97.1%  15.2%     TFELLNRVNSGGLSATYRFPR----STCIYSTTMVAVEVTFVNNSSAKIQNISIGETKLAAGMKLHE-------------    
24 51511.ENSCSAVP00000012072_from_812_to_957             95.0%  18.3%     SYELLHRVTGGGLSAKYRYPR----SPCIYSDTMITVELEFTNSSDSPIQNIHIGEKKLQAGLKVHD-------------    
25 7719.ENSCINP00000018007_from_781_to_927               95.7%  17.0%     SYELLHRVTGGGMAAKYRYPR----TPCVYSDKMISVEVEITNTGDKPINNIHMGDKKLQAGLKVHD-------------    
26 121224.XP_002427262_from_786_to_929                   93.6%  17.6%     GKELVNKLNGGGLSVEYRYTR----SPHLFSYKMISIELTFINHGPDDVTEIKIDSKDSNQGIIIHG-------------    
27 7070.XP_970593_from_737_to_877                        95.7%  23.1%     TIELINKINGRGLSATYRFTR----TPHILSPSMANINIMFTNNTTEDISDIRLGKKNLGLDMSMYE-------------    
28 7425.XP_001605478_from_812_to_956                     96.4%  24.7%     KYELLNKVSGRGLKLEYRFTR----SQHLVSPALVNIELTFANEGTETIKDIRVGNKNLATGMSLHD-------------    
29 7460.XP_624446_from_774_to_913                        92.9%  20.0%     KSELLNSITGHGLKIEYRFTR----SQHLVSAYLVTIELTFSNEGNELIKEIQMGVKNLPKGMLIHD-------------    
30 7227.FBpp0070670_from_868_to_1019                     97.1%  17.9%     HKELLNKVSGHGLHLAYRFTR----SPHLYSSSMCSIELQFQNRGEKEITAIRLGQTTLPAGMQLNE-------------    
31 7159.AAEL009039-PA_from_808_to_953                    97.1%  20.0%     SHELLNKVNGFGLGITYRFTR----APHLYSAKMISIELTFTNHGNVELTDVQINKKNIQSGMSLKE-------------    
32 7176.CPIJ009748-PA_from_819_to_964                    97.1%  20.7%     SSELLNKINGYGLGIAFRFTR----APHLYSAKMISIELTFTNHGNVELTDIQLGQKGLQAGMTLNE-------------    
   consensus/100%                                                         ...hh...ss.Ghth.a.a......t....t..h..lph.h.N.s...h.tl.h...t......................    
   consensus/90%                                                          t.pLLp.hsGtGLthtYtasp....p...hs..hhslpl.htNpsst.hptltl.t.p...shp................    
   consensus/80%                                                          phcLLpphsGtGLsspYtFsR....ps..hssthlslpl.hpNpsst.lpplpltp.p..tuhphpp.............    
   consensus/70%                                                          phELLp+hsGpGLuspYpFsR....pPp.huspMlslplhhsNpssp.lpslplsppch.suhphp-.............    

                                                           cov    pid 161          .         .         .  ] 193
 1 44689.DDBDRAFT_0167983_from_806_to_945               100.0% 100.0%     ------FDPIES-IEPNQAIQKQIYVLFNSTSQ    
 2 3218.JGI183108_from_764_to_906                        91.4%  15.8%     ---VISFEEIAE-LAPGDTIERDLQVEFKHQLT    
 3 4558.Sb07g001660.1_from_794_to_933                    89.3%  14.5%     VPTIVPLEEIHS-LAPQQMAKMVLQVHFHHHLL    
 4 15368.BRADI2G62270.1_from_786_to_942                  92.9%  14.6%     IPTLAPVEEIRS-LAPQQTVKMILQVHFHHHLL    
 5 3694.estExt_Genewise1_v1.C_LG_X2139_from_679_to_821   89.3%  17.3%     VPTLVPMEEIAS-LEPGQTVKKIVYVCFHHHLL    
 6 59689.fgenesh1_pg.C_scaffold_5002027_from_796_to_940  93.6%  16.0%     VPTLIPMEEISC-LEPRQSAKRLIQVRFHHHLL    
 7 164328.JGI73678_from_812_to_951                       91.4%  13.4%     ------FPELPVLFPGGSTSMAQLQVDFVGRLD    
 8 6945.ISCW005629-PA_from_763_to_908                    96.4%  17.2%     ------FPRSGTPLGPGSSIVGTVGIDFNESTQ    
 9 10228.JGI30877_from_739_to_882                        89.3%  15.1%     ------FSEISS-LESNASKTVLIGIDFKDTTH    
10 99883.ENSTNIP00000011283_from_799_to_946              96.4%  18.3%     ------FPEIEL-LPAGETATAVLGIDFCDSTQ    
11 13616.ENSMODP00000002419_from_815_to_961              95.0%  18.2%     ------FPEIES-LAPGDSITAIMGINFSDSTQ    
12 9986.ENSOCUP00000005580_from_767_to_913               95.0%  18.8%     ------FPEIES-LAPGETATAVMGINFCDSTQ    
13 9823.ENSSSCP00000001974_from_793_to_947               95.0%  19.2%     ------FPEIES-LAPGESATAIMGINFCDSTQ    
14 9258.ENSOANP00000021088_from_741_to_888               95.7%  17.5%     ------FPEIES-LASGDTLTAIMGIDFCDSTQ    
15 9031.ENSGALP00000003331_from_778_to_925               97.1%  20.4%     ------FPEIES-LAPGDTASVVMGIDFCDSTQ    
16 28377.ENSACAP00000011960_from_773_to_920              95.7%  19.5%     ------FQEIET-LPPGETVNVVMGIDFCDSTQ    
17 7739.JGI102900_from_808_to_961                        97.1%  17.1%     ------FPEIPS-LPGGGSMSVSIGIDFKDTIQ    
18 8090.ENSORLP00000002945_from_817_to_962               96.4%  19.2%     ------FNTIER-LEPGASVTVSMGVDFSDSTQ    
19 9031.ENSGALP00000006987_from_817_to_964               97.1%  20.4%     ------FNPIEC-LEPERSVTVSMGIDFCDSTQ    
20 9823.ENSSSCP00000014994_from_807_to_954               96.4%  19.0%     ------FNPIGS-LEPGGSITVSMGIDFCDSTQ    
21 9258.ENSOANP00000004914_from_776_to_923               96.4%  20.9%     ------FPPIES-LDPEASITVSMGIDFCDSTQ    
22 28377.ENSACAP00000007503_from_818_to_965              97.1%  19.7%     ------FNSIES-LEPGKSITVTMGIDFCDSTQ    
23 7668.XP_001201562_from_442_to_601                     97.1%  15.2%     ------FPEITN-LSVSQSTTAIIGIDFRDTTQ    
24 51511.ENSCSAVP00000012072_from_812_to_957             95.0%  18.3%     ------FAEIDA-IEPGSSKTSTMGIDFCDTTQ    
25 7719.ENSCINP00000018007_from_781_to_927               95.7%  17.0%     ------FDVIDI-LEPGATTTSTMGVDFCDTTQ    
26 121224.XP_002427262_from_786_to_929                   93.6%  17.6%     ------FTPISC-LKVNSRQSELIGVDINDSTH    
27 7070.XP_970593_from_737_to_877                        95.7%  23.1%     ------FANIAR-LPPNGCLPASLGIDFNDTTQ    
28 7425.XP_001605478_from_812_to_956                     96.4%  24.7%     ------FSPIPV-LQPNSSLACTIGINFNDSTQ    
29 7460.XP_624446_from_774_to_913                        92.9%  20.0%     ------FTKIPL-LEINSNLSSTLGINFNDSTQ    
30 7227.FBpp0070670_from_868_to_1019                     97.1%  17.9%     ------FAPITV-LQPQQTASGVLGVDFNDSTH    
31 7159.AAEL009039-PA_from_808_to_953                    97.1%  20.0%     ------TATIEM-LNPKQSWTGVLGLDFNDSTQ    
32 7176.CPIJ009748-PA_from_819_to_964                    97.1%  20.7%     ------FPPIEI-LNPKQSWTGILGLDFNDSTQ    
   consensus/100%                                                         ......h......h..tt.....h.l.h.tp..    
   consensus/90%                                                          ......h..I...L.sttsht..htlpFpcph.    
   consensus/80%                                                          ......Fs.It..Ltsttohph.htlsFpcohp    
   consensus/70%                                                          ......FspIps.LtPspohsshhGlcFsDoTQ