cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 9031.ENSGALP00000012183_from_17_to_258  100.0% 100.0%     RCRQQLRHLQDGARI---AARLPPRLEGQWVSTGCEVRPGPEFLTRSYLFY--ANRLFKAFQFYYWDPSCREPSYSLVIK    
 2 9615.ENSCAFP00000017848_from_24_to_260   97.5%  67.5%     RCQQPLPH---RVPV---TAPLPPRLDGPWVSTGCEVRPGPEFLTRSYTFY--PSRLFRAYQFYYRDPSCREPAHSLLIK    
 3 13616.ENSMODP00000020660_from_6_to_244   98.8%  76.4%     QCQYQLRHLQDGARI---TAMLPPRLEGHWISTSCEVRPGPEFLTRSYMFF--SNRLFKAYQFYYQDPSCREPLYSLLIK    
 4 7955.ENSDARP00000102504_from_34_to_265   95.0%  58.2%     QCQAQLRHLQNEGRI---TATIPPKLEGHWVSSRCEVRPGPEFLTRSYTLYqsPTRLFRALQHYYSDSECQVPTYSLVIR    
 5 10116.ENSRNOP00000032411_from_32_to_268  97.5%  60.9%     QCQQPVPK---GTPI---TVVPLPLLTGPWISTGCEVRPGPEFLTRSYTFY--SNHLFRAYQFYYRDPSCQQPTHSLLIK    
 6 13616.ENSMODP00000026785_from_32_to_264  96.3%  53.3%     QCHHMLKHLHNGARI---TVQMPPTIEGHWVSTGCEVRSGPEFITRSYRFY--HNNTFKAYQFYYGGNRCTNPTYTLVIR    
 7 28377.ENSACAP00000014507_from_3_to_244  100.0%  78.1%     QCQYQLRHLQDGARI---SALLPPRLEGHWVSTGCEVRPGPEFLTRSYVFF--PNRLFKAYQFYYRDPACQDTTYSLVIK    
 8 99883.ENSTNIP00000021435_from_50_to_276  93.8%  51.7%     DCPHRLP--QASVRV---TADVPPRLDGTWVSTRCEVRPGPEFLTRSYTFH--PSRHFQALQHYYADSGCEDPAYSLMIR    
 9 31033.ENSTRUP00000007638_from_48_to_278  95.5%  52.5%     QCQHMLKHLHNGARI---TVQMPPVVEGHWVSTSCEVRPGPEFLTRSYSFY--SNNTFQAHQFYYEDNHCTKPTYTLVIR    
10 8364.ENSXETP00000005204_from_3_to_235    96.3%  65.3%     QCQYQLRHLQDGARI---TALLPPNIEGHWISTGCEVRPGPQFLIRSYRFY--PERLFKALQFYYRDPHCRDPSHSLVIK    
11 8090.ENSORLP00000008441_from_3_to_229    93.8%  52.5%     HCQY--RHLQDRVKV---TADIPPKLEGTWVSTRCEVRPGPQFLTRSYSFQ--PNRHFHALQHYYSDSSCGDPAYSLLIR    
12 45351.JGI121336_from_2_to_229            93.4%  28.7%     SCRQIVRHITHYRGI---RSQIRPDVSGIWTSSRCEARPGPKFLTRFVQIF--SNQTWQADFHFYSDYQCTKPTFTLHVR    
13 7955.ENSDARP00000081410_from_4_to_229    93.4%  45.9%     ECVQMLKHLHSGARI---TVQMPPDIQGHWVSTSCEVRPGPEFITRSYRFL--HNSSFSALQFYYSDVHCSSPTHTLLVR    
14 7739.JGI95910_from_28_to_209             75.2%  33.5%     TCGRRLKTLVHGALV---VAPMPPNITGKWVSSRCEVRPGPQFITRSYTFK--DNMDFQTYQFFYADQHCVSPLYTVTAH    
15 6085.XP_002165888_from_22_to_263         92.1%  20.3%     KCEDFSKHIDFHNPT---FFYAPLSPIGSWTSSSCEVIPGPRYILRKWNI---KESVFYGTIFHYSDSWCTQPLFSVQVS    
16 10116.ENSRNOP00000059242_from_9_to_243   91.3%  22.3%     ACRIIYRSDEHHPPILppKADLTIGLHGEWVSQRCEVRPEVLFLTRHFIFHd-NNNTWEGHYYHYSDPVCKHPTFTIYAR    
17 7739.JGI107743_from_123_to_326           81.8%  23.0%     TCKIVQDADERRPPVfktrQEYPLHLNGEWISMRCEVRPEALFLTRHLVFYp-ANKRWEGWYAHYSDPSCRHSTFSIHAS    
18 6945.ISCW017502-PA_from_20_to_255        90.5%  21.9%     VCHLVSKAGDQSPPQlppkpqlpvyLSGQWLSMRCEVRPLGLFLTRTLWYHv-SNSSWRGWYQYYRDPNCMQPWFLLRVE    
19 7719.ENSCINP00000022338_from_87_to_304   84.7%  20.0%     QIGRFFPPNLHRTLISPNSQQFI--LHGNWLSVRCELRPHSSFLTRHLFFPR-NgNVWSGVYRYYVDDQCREPYYTLRAH    
   consensus/100%                                            .h.........................G.WhS.tCEhhs.s.alhR.h.h....t..a.s...aY.s..C..s.a.l.hp    
   consensus/90%                                             tC.........ts.h......h...lpG.WhS.tCElRPts.FlhRph.h....pp.apuh.haY.D..C.ps.aolhhp    
   consensus/80%                                             pCt....t..tts.l...ps.hs..lpGpWlSstCEVRPtspFlTRph.ah..ssphapuh.aaYtDstCppPhaolhh+    
   consensus/70%                                             pCp..h+p.ppts.l...ss.hPPplpGpWlSotCEVRPGPpFLTRoahFa..ssphFpuh.aYYpDspCppPsaoLhl+    

                                              cov    pid  81          .         1         .         .         .         .         :         . 160
 1 9031.ENSGALP00000012183_from_17_to_258  100.0% 100.0%     GKLRLRQ--ASWITRGATEADYHLHKVGIVFHSQKAMREVASRINQS-SGEGCSGFLP----------PGRAW--APR-A    
 2 9615.ENSCAFP00000017848_from_24_to_260   97.5%  67.5%     GKVRLRR--ASWVTRGATEADYHLHKVGIVFHSRRALLDVTRSLNQTWAGRDCAQRLP----------PARAW--LPG-A    
 3 13616.ENSMODP00000020660_from_6_to_244   98.8%  76.4%     GKIRLRQ--TSWITRGATEANYHLHKVGIVFHSQSAILEIAERINQT-SGRGCGKLLP----------PGRSW--TPG-T    
 4 7955.ENSDARP00000102504_from_34_to_265   95.0%  58.2%     GKLRLRQ--ASWITRGATEAEHHLHKVGMVIHSQKAIHHLATRLPSS-----CLGLK-----------AEGHL--VLH-R    
 5 10116.ENSRNOP00000032411_from_32_to_268  97.5%  60.9%     GKVHLRQ--ASWVTPGATEADYHLHKVGIVFHSHHALLDIARRLNQTQAGQDCTGRLP----------PGQAW--LPG-T    
 6 13616.ENSMODP00000026785_from_32_to_264  96.3%  53.3%     GKIRLRQ--ASWIIRGGTEADYQLHNVQIICHSEAVAERLSQLVNRT-----CPGFIP----------SDNPW--VQD-A    
 7 28377.ENSACAP00000014507_from_3_to_244  100.0%  78.1%     GKIRLRQ--ASWITRGATEADYHLHKVGIVFHSQRAMWETVARINQS-SGEHCSEFLP----------AGRTW--APG-A    
 8 99883.ENSTNIP00000021435_from_50_to_276  93.8%  51.7%     GKLRLRH--ASWITGGATDAEHHLNKVAIVIHSLAAKQRLTSGLPSS-----CVTLTL------------GQV--VPG-K    
 9 31033.ENSTRUP00000007638_from_48_to_278  95.5%  52.5%     GRLRLRQ--ASWIVRGGTEAEYHLHRVQIVCHTAAVAKELSQRFNRS-----CRGAVK------------GPW--EVN-G    
10 8364.ENSXETP00000005204_from_3_to_235    96.3%  65.3%     GKVRLRQ--ASWITRGAMEADYQLHKVGVAFHSQEMMSRVRAQMNRT-----CAGFVH----------TGRSW--APG-R    
11 8090.ENSORLP00000008441_from_3_to_229    93.8%  52.5%     GKIRLQQ--ASWITPGGTEAEHHVTKVGIVVHSISAKQTLAARLPQT-----CTDVSL------------DRV--VPG-K    
12 45351.JGI121336_from_2_to_229            93.4%  28.7%     GAYWLGN--EAKDLKGATAAHFNFTTIHIHPHTQAEEVKIVTVMKKS-----CPDTLL----------NIKE---TPGIG    
13 7955.ENSDARP00000081410_from_4_to_229    93.4%  45.9%     GRLRLRQ--ASWIVRGGTEADYQIQSTRVVFHSESAAAALGLQLERG-----CRSI-------------SRSW--RLN-M    
14 7739.JGI95910_from_28_to_209             75.2%  33.5%     GTIILR---------------------------------------------------------------------YNN-V    
15 6085.XP_002165888_from_22_to_263         92.1%  20.3%     GSYKIHAATATPQAkisKACEFKFEKIFYKTDNVTTLQETLELIKQK-----CIDAIPVLTMVKESDSENITWDLFIN-K    
16 10116.ENSRNOP00000059242_from_9_to_243   91.3%  22.3%     GRYSRGV--LSSRVMGGTEFVFKVNHMKVTPMDA----ATASLLNVF-SGNECG--------------AEGSW--QVG-I    
17 7739.JGI107743_from_123_to_326           81.8%  23.0%     GSFTRGA--RSSVVEGGTEYIFQVTQMRVTPQDS----DMTSLLNVF-HGQGCG--------------DGGIW--QIG-R    
18 6945.ISCW017502-PA_from_20_to_255        90.5%  21.9%     GIFSRAG--PSLRLRGATNYDFQLLTAEVTPQDR----GIVNNLNSASEDGRCG----------------GPW--FLN-R    
19 7719.ENSCINP00000022338_from_87_to_304   84.7%  20.0%     GRYDRTA--INP-TNGDADYVFDARRMFITSHSV----NLTSLLNDAKRGS-------------------LKL--ETH-V    
   consensus/100%                                            G.h.ht.......................................................................t.h    
   consensus/90%                                             Gth.ht....s..h.hshth.aph.ph.hh..s.....th...h.................................t.h    
   consensus/80%                                             Gphphtt..ho..h.Gusph.aphpphtlh.ps.....thst.h.pt.....C.................t.h....s.h    
   consensus/70%                                             G+hcLpt..sShhspGuT-scaplpphtls.Hott...plsphlsps.....C.th..............tth..h.s.t    

                                              cov    pid 161          .         .         .         2         .         .         .         . 240
 1 9031.ENSGALP00000012183_from_17_to_258  100.0% 100.0%     LYELLSAK-TERDCTAALGF---AMHELSLVRVERHHQPLPGLQQSGSSLVEELYLGDIHTD--WLERLHYRPTGYQRPL    
 2 9615.ENSCAFP00000017848_from_24_to_260   97.5%  67.5%     LYELLSAR-AKQDCTEALGF---TMHELSLVRMQRHLQ---LQPRAGARLVEELYLGDIHTN--HAERRHYRPTGYQRPL    
 3 13616.ENSMODP00000020660_from_6_to_244   98.8%  76.4%     VYELLSAK-AERDCTGALGF---AMHELSLIRVERHYK---LQQMPGNRVVEELYLGDIHTE--WSERLHYRPTGYQHPL    
 4 7955.ENSDARP00000102504_from_34_to_265   95.0%  58.2%     FYELFNAK-AEKDCLGALGF---SMMELELLRVETHHH-------PHGRPAQELFLGDVHTE--WNERVHYRPSGYQEPL    
 5 10116.ENSRNOP00000032411_from_32_to_268  97.5%  60.9%     LYELLSSQ-VPGDCMVALGF---SMHELSLLCLQRHIQ---QQPGLAPHLVEELFLGDVHTD--WAERQHYRPTGYQSPL    
 6 13616.ENSMODP00000026785_from_32_to_264  96.3%  53.3%     TYDLWREE-NGRECTKAVNF---AMHELQLIRVEKQYL-----HHNLDHLVEELFLGDIHTD--SSQRMFYRPSSYQPPL    
 7 28377.ENSACAP00000014507_from_3_to_244  100.0%  78.1%     LYELLSAK-AERDCTSGLGF---AMHELSLVRVEKYQPPLFLQQNQGNGEVEELHLGDIHTE--WSERLHYRPTGYQRPL    
 8 99883.ENSTNIP00000021435_from_50_to_276  93.8%  51.7%     PYELYNTR-GGRGCLAALGF---SMMELGLVRVETQHH-------GHGGKVQELLLGDIDTD--WTQRTQYRPTGYQQPL    
 9 31033.ENSTRUP00000007638_from_48_to_278  95.5%  52.5%     IYALWSEE-DGFDCSKELNF---AMHELQLLRVEKQHL-----QHNLDHLVEELFLGDVHTE--PSQRLYYKPSSYQMAL    
10 8364.ENSXETP00000005204_from_3_to_235    96.3%  65.3%     VYELVSTK-LGRDCSGAIGF---TMHELSLLRLERQYN-----PQHKGALVEKLFLGDIHTD--ESERVHYRPTGYQQPL    
11 8090.ENSORLP00000008441_from_3_to_229    93.8%  52.5%     LIELYNTR-AGRGCLAALGF---SMMEMSLVRVQTQHH-------SHGGKVQELFLGDIHTD--WIQRTLHRPTGYQQPL    
12 45351.JGI121336_from_2_to_229            93.4%  28.7%     VYSATNAAFSKRLCRTTFGI---SDYEFSVLKINTFKM--------LSSKSDLLYFGEIPT---GKSRRRYSPTSYQLPL    
13 7955.ENSDARP00000081410_from_4_to_229    93.4%  45.9%     SYELWSEE-KDSECTAQINF---SMHELQLLRLEKQHL---------EPALEELYLGDIHTQ--AEHRLTYRPSSYQPAL    
14 7739.JGI95910_from_28_to_209             75.2%  33.5%     PHQVLSRR-GERDCAAGLDF---VLHELQLLRVERRQD------ARDGHVTMELFLGDIHTD--RAQRLLYRPTSYQPPL    
15 6085.XP_002165888_from_22_to_263         92.1%  20.3%     NIKIENAAITKKHCRYYFGLHsnsYKKISMIGLKKDFS----------NENDVLYFSDIPPKH-HEKsKDYIGDGFQYGL    
16 10116.ENSRNOP00000059242_from_9_to_243   91.3%  22.3%     QQDVTH---TNGCVALGIKL---PHTEYEIFKMEQDAR---------GRYL--LFNGQRPSDGSSpdRPEKRATSYQMPL    
17 7739.JGI107743_from_123_to_326           81.8%  23.0%     EQDVTS---TNGCVALGITL---PHIEYELFDMERDMY---------DRLL--LYIGQRPSDGTSPTHpgRRATSYQTPL    
18 6945.ISCW017502-PA_from_20_to_255        90.5%  21.9%     PQDVTL---AGGCyLLGLSV---PSTKYEVVKMEVDMY---------GNAL--LFLGDVDTDg-gvtLPERRATAYQTPL    
19 7719.ENSCINP00000022338_from_87_to_304   84.7%  20.0%     EYDVPE---TEGIPLIDLSL---PRREYDHIMMRR-ID---------GNLL--LFTGRRPNDgtIPDSADKRTTSYQDEL    
   consensus/100%                                            ..th.............hth...s.hchthh.hp...................Lh.uph.s.....p...h.ssuaQ..L    
   consensus/90%                                             ..pl.p....tt.s..thsh...s.hchphhthpp.............t....LahGph.sp....pp..hpsouYQ.sL    
   consensus/80%                                             .hclhp...stttshhslsh...shhEhpllchppph..........sthh..LahG-l.oc....p+..hRsouYQ.sL    
   consensus/70%                                             .a-lhstt.sttsChhulsh...shpEhpLl+lcpph..........sphlp.LaLGDlcT-..hspRhpYRPTuYQ.PL    

                                              cov    pid 241          :         .         .        ] 279
 1 9031.ENSGALP00000012183_from_17_to_258  100.0% 100.0%     QSV--------VHHMHPCPACGVIYRADEHHPP--ILPA    
 2 9615.ENSCAFP00000017848_from_24_to_260   97.5%  67.5%     QSA--------LHHARPCPACSLIARSDEHHPP--VLPP    
 3 13616.ENSMODP00000020660_from_6_to_244   98.8%  76.4%     QSA--------MHHSHPCPACGIIYRSDEHHPP--ILPH    
 4 7955.ENSDARP00000102504_from_34_to_265   95.0%  58.2%     QNA--------MHHIHPCPVCGLVYRASEQHPP--ILPP    
 5 10116.ENSRNOP00000032411_from_32_to_268  97.5%  60.9%     QSV--------VHHTRPCPACSLLAHSNEHRPP--VLPS    
 6 13616.ENSMODP00000026785_from_32_to_264  96.3%  53.3%     QNA--------KNHDHACIACRIIYRSDEHHPP--ILPP    
 7 28377.ENSACAP00000014507_from_3_to_244  100.0%  78.1%     QNA--------MHHIHPCPACGIVYRADEHHPP--LLPE    
 8 99883.ENSTNIP00000021435_from_50_to_276  93.8%  51.7%     QNA--------MHHVHPCPVCALVYRSSELHPP--VLPP    
 9 31033.ENSTRUP00000007638_from_48_to_278  95.5%  52.5%     QNA--------KNHDHGCIVCRIIYRSDEFHPP--ILPP    
10 8364.ENSXETP00000005204_from_3_to_235    96.3%  65.3%     QSA--------LHHVHPCPACMEIYRADEHRPP--VMPR    
11 8090.ENSORLP00000008441_from_3_to_229    93.8%  52.5%     QNA--------MHHIHPCPVCALVYRSSEKRPP--VLPR    
12 45351.JGI121336_from_2_to_229            93.4%  28.7%     K----------RNNAPNCTICMVISTASAGVAP--IIPK    
13 7955.ENSDARP00000081410_from_4_to_229    93.4%  45.9%     HNA--------RNHDGRCLVCRMVSRSDEFHPP--VLPV    
14 7739.JGI95910_from_28_to_209             75.2%  33.5%     VNV--------ELSYPNCTTCKIVQDADERRPP--VFKT    
15 6085.XP_002165888_from_22_to_263         92.1%  20.3%     FRV----------HRPNCPVCELINVSEEQ--P--ILPP    
16 10116.ENSRNOP00000059242_from_9_to_243   91.3%  22.3%     Vqc-asssp-RAEDLLEDSRAHLYGRAAGRTAGslLLPA    
17 7739.JGI107743_from_123_to_326           81.8%  23.0%     VQC---------------------------------LPS    
18 6945.ISCW017502-PA_from_20_to_255        90.5%  21.9%     iqcrvfpeLVTDNEVYSLPRAQLVSMADAGAPR--CRPW    
19 7719.ENSCINP00000022338_from_87_to_304   84.7%  20.0%     LRCRSKCAf--ddlrdstfLCGISAT---------ELPG    
   consensus/100%                                            ....................................h..    
   consensus/90%                                             .ps................hs...............hP.    
   consensus/80%                                             .ps.........pp..ss.hCtll.pust.hss..llP.    
   consensus/70%                                             .ps........hpchhsCssCtll.cusEtpPP..lLP.