cov    pid   1 [        .         .         .         .         :         .         .         . 80 
1 arf6_chick     100.0% 100.0%     ----MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH    
2 arf2_yeast     100.0%  63.0%     MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH    
3 arf1_human     100.0%  65.2%     MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH    
  consensus/100%                   ....huplhptlFGpKEMRILMlGLDuAGKTTlLYKLKLGp.lTTIPTlGFNVETVpYKNlpFsVWDVGGQD+IRsLWRH    
  consensus/90%                    ....huplhptlFGpKEMRILMlGLDuAGKTTlLYKLKLGp.lTTIPTlGFNVETVpYKNlpFsVWDVGGQD+IRsLWRH    
  consensus/80%                    ....huplhptlFGpKEMRILMlGLDuAGKTTlLYKLKLGp.lTTIPTlGFNVETVpYKNlpFsVWDVGGQD+IRsLWRH    
  consensus/70%                    ....huplhptlFGpKEMRILMlGLDuAGKTTlLYKLKLGp.lTTIPTlGFNVETVpYKNlpFsVWDVGGQD+IRsLWRH    

                    cov    pid  81          .         1         .         .         .         .         :         . 160
1 arf6_chick     100.0% 100.0%     YYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR---------    
2 arf2_yeast     100.0%  63.0%     YYRNTEGVIFVIDSNDRS--RIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIR---------    
3 arf1_human     100.0%  65.2%     YFQNTQGLIFVVDSNDRE--RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---------    
  consensus/100%                   YapsTpGlIFVlDssDRp..RlsEARp.h.Rhls-cEhRsAlhLlFANKQDLPpAMpstEIp-KLGLpplR.........    
  consensus/90%                    YapsTpGlIFVlDssDRp..RlsEARp.h.Rhls-cEhRsAlhLlFANKQDLPpAMpstEIp-KLGLpplR.........    
  consensus/80%                    YapsTpGlIFVlDssDRp..RlsEARp.h.Rhls-cEhRsAlhLlFANKQDLPpAMpstEIp-KLGLpplR.........    
  consensus/70%                    YapsTpGlIFVlDssDRp..RlsEARp.h.Rhls-cEhRsAlhLlFANKQDLPpAMpstEIp-KLGLpplR.........    

                    cov    pid 161          .         .         .         2    ] 205
1 arf6_chick     100.0% 100.0%     ---DRNW----------YVQPSCATTGDGLYEGLTWLTSNYKS--    
2 arf2_yeast     100.0%  63.0%     ---NRPW----------FIQSTCATSGEGLYEGLEWLSNNLKNQS    
3 arf1_human     100.0%  65.2%     ---HRNW----------YIQATCATSGDGLYEGLDWLSNQLRNQK    
  consensus/100%                   ...pRsW..........alQsoCAToG-GLYEGLpWLosph+s..    
  consensus/90%                    ...pRsW..........alQsoCAToG-GLYEGLpWLosph+s..    
  consensus/80%                    ...pRsW..........alQsoCAToG-GLYEGLpWLosph+s..    
  consensus/70%                    ...pRsW..........alQsoCAToG-GLYEGLpWLosph+s..