cov pid 1 [ . . . . : . . . 80 1 AMY_STRVL/381- 100.0% 100.0% TNWWDNGNNAIAFGR-------------G-SKAYVAINHETS---ALTRTFQTSLPAGSYCDVQ-----------SNTP- 2 O86876/388-464 100.0% 75.3% TDWWDNGGDQIAFGR-------------G-SKAYVAINHEGT---SLTRTFQTSLPAGDYCDVQ-----------TGKG- 3 AMY_STRLM/381- 100.0% 71.4% TNWWDNGGDQIAFGR-------------G-DKAYVAINHEGS---ALNRTFQSGLPGGAYCDVQ-----------SGRS- 4 O24781/409-494 98.7% 58.6% VNKWDNGSSAIAFGR-------------G-DKGYVAIN-RGS---ALTRTFQTSLPAGNYCNVI-----------VGLPN 5 AMY_STRTL/382- 100.0% 67.5% TDWWDDGADAIAFGR-------------G-SKGFVAINHESA---TVQRTYQTSLPAGTYCDVQ-----------SNTT- 6 O65947/375-451 100.0% 64.9% TDWWDNGGDAIAFGR-------------G-SKGFVAINHESA---TISRTYQTSLPPGPYCNVQ-----------NNTT- 7 AMY_ALTHA/383- 100.0% 45.5% TNWWDNTNNQISFGR-------------G-SSGHMAINKEDS---TLTATVQTDMASGQYCNVLKGELSA--DAKSCSG- 8 Q9L4I9/377-453 97.4% 44.3% THWWDNGHHQIAFSR-------------E-AQGFIAINREQQ---ALTHTFQTDMADGRYQNV------------TAEG- 9 Q59964/374-457 100.0% 50.0% TDWWDNGGSALAFGR-------------G-DKGFVALNNADD---ALTETFTTSLPAGTYCNVAAASPDD----CDGNT- 10 AMY_STRHY/369- 96.1% 49.4% TNWWDNGGRPLAFAR-------------S-DKGFVALNNGDA---ALTQTFATSLPAGTYCDVVHAASS-----CDGDT- 11 AMY_THECU/401- 98.7% 45.3% GSAVTDGNGRLAFAR-------------G-SAGYAAFNATNT---AWTRTFTTSLPDGVYCDVANGTFVD--GVCDGPS- 12 AAK17994/373-4 100.0% 40.4% TNWWDDGYNQVAFGR-------------G-GLGFVVINRDDN--KGINQGFATGMPAGEYCDIISGDFNSQTGTCSGTT- 13 Q9KK55/396-477 97.4% 34.9% -NQVVINDNAIAFGR-------------G-DKGFVVIN-NGQ--SSVNQTLYTGMPAGDYCDILRAD-----DECSGTN- 14 Q9I9H6/423-511 100.0% 29.2% SNWWDNQSNQVAFGR-------------G-NRGFIVFNNDDW---DLDETLNTGMPGGTYCDVISGQKEG--GRCTGKQ- 15 Q91337/205-293 100.0% 30.3% INWWDNEQNQVAFGR-------------G-RAGFIVFNNDNW---DMDVTLDTGLPPGTYCDIISGQKED--NRCTGKQ- 16 Q98942/423-511 100.0% 36.0% SNWWDNGSNQVAFGR-------------G-DRGFIVFNNDDW---YMNVDLQTGLPAGTYCDVISGQKEG--SACTGKQ- 17 BAB39466/432-5 100.0% 37.1% ANWWDNGSNQVAFGR-------------G-NKGFIVFNNDDW---DLSTTLQTGLPAGTYCDVISGDKVD--GNCTGIK- 18 AMY_PECMA/412- 100.0% 39.3% QHWWDNGNYQIAFGR-------------G-NKGFIAMNMDNH---NLDQTLQTGLPAGTYCDVISGSYDG--SSCSGTE- 19 O02622/421-509 100.0% 37.1% TNWWDNGDYAIAFSR-------------G-NKGFIVINAGTS---DINVNLQTGLSQGTYCDVISGNYDN--GRCTGNE- 20 Q23834/406-494 100.0% 40.4% QNWWDNGSNQIAFSR-------------G-GKGFVAFNNDNY---DLNSSLQTGLPAGTYCDVISGMKNG--SSCTGKT- 21 O77407/405-493 100.0% 39.3% QNWWDNGNNQIAFSR-------------G-NKGFVAFNNDNS---DLNQSLKTELPKGSYCDVISGAKKG--SVCTGKT- 22 Q9U8X5/403-491 100.0% 37.1% DNWWDNGSNQIAFSR-------------G-CSGFVAFNGDQY---DLKKNLKVCLPPGQYCDVISGNLEK--GRCTGKI- 23 O97396/397-484 98.7% 39.3% SNWWSDGNQQIAFGR-------------G-DKGFVAFTLAG----DINGNLQTSLPAGSYCDIVSGKLEN--GSCTGKT- 24 Q9N2P9/391-478 98.7% 38.2% TNWWTDGYQQIAFGR-------------G-NKGFVAFSLSG----DIKADLQTSLPPGTYCDVITGDISN--NSCTGKT- 25 Q9U406/394-481 98.7% 41.6% NNWWSNGHQQIAFGR-------------G-NKGFIAFTLYG----DIKQSLQTSLPAGTYCDVISGSLEK--GSCTGKT- 26 Q26855/402-489 98.7% 42.7% ENWWSDGNQQIAFGR-------------G-NKGFVAFTIGY----DLNQHLQTGLPAGSYCDVISGNAEN--GSCSGKT- 27 AMY_TENMO/383- 98.7% 37.1% ENWWSNDDNQIAFSR-------------G-SQGFVAFTNGG----DLNQNLNTGLPAGTYCDVISGELSG--GSCTGKS- 28 Q26193/423-511 100.0% 38.2% NDWWDNGSNQIAFCR-------------G-NKGFLAINNDGW---DLKETLQTCLPAGTYCDVISGSKNG--GSCTGKS- 29 Q23767/407-495 100.0% 36.0% NDWWDNGANQMAFCR-------------G-NRGFIAFNLESF---NLSQTLQTCLPAGTYCDVISGVKQG--STCTGGT- 30 Q25590/409-497 100.0% 38.2% NDWWDNGSNQIAFCR-------------G-GQAFIAFNNDLW---DLSQTLQTCLPAGQYCDIISGSRSG--NGCTGKV- 31 Q16924/402-490 100.0% 37.1% NDWWTNGNMQIAFCR-------------G-ANGFVAFNLESY---DMNETLQTCLPAGTYCDVISGSKEG--GSCTGAT- 32 O02652/402-486 96.1% 27.3% NDWWSNGNQQIAFCR-------------G-GSGFVAFNLEGY---DMNENLQTCLSAGTYCDVISGSKEG--GSS--LV- 33 Q17059/413-501 100.0% 37.1% QHWWDNGNNQIAFAR-------------G-NVGFVAFNNEPF---DMNVILQTGLPAGIYCDVISGAREG--ETCTGLQ- 34 Q9XZ45/409-496 98.7% 30.3% RKWYDNGSNQIAFSR-------------G-NQGFVAFNLDIV---DFNQQVPTDLPDGVYCDVISGEKNG--NECTGKV- 35 O76263/403-491 100.0% 40.4% TNWWDNGDNQIAFCR-------------G-SKGFIAINNNLY---NLSETLQTCLPAGEYCDVISGSLVD--GACTGKS- 36 6850160/404-49 100.0% 39.3% TGWWDNGDNQISFCR-------------G-NKGFLAINNNLY---DLSQDLNTCLPAGTYCDVISGSLID--GSCTGKS- 37 O18552/405-493 100.0% 37.1% SNWWDNGDSQIAFCR-------------G-SKGFIAFNNNMY---NLAEVLQTCLPKGVYCDVISGDLIN--GSCSGKS- 38 Q9Y196/428-519 100.0% 33.7% RNWWDNGDYQIAFSR-------------G-SHAFIAINLQKNGDKNLRQRLHTGLPAGTYCDIISGDLIH--NKCTGKS- 39 O02413/656-735 92.2% 30.0% ------TQNTFAFCR-------------G-EKGFIVFNNSEN---TITQQYHTCLPQGQYCDIISGEVSQ--STCTGTV- 40 P91982/427-511 98.7% 27.9% ADIVTDTR-RIAFAR-------------D-GKGFFALNQQDG---AWTKIFATNLPAGDYCDHFSGGLDN--GKCVGTK- 41 Q48502/402-477 96.1% 25.3% ISNPNGNTKIFENER-------------G-SKGVVFANASDS---SYSLNVKTSLADGTYENKAGS----------DE-- 42 AMY_BACSU/393- 96.1% 24.1% LSNPNGNNQIFMNQR-------------G-SHGVVLANAGSS---SVSINTATKLPDGRYDNKAGA----------GS-- 43 AAA63759/392-4 92.2% 26.9% --RLQNNNKAMIIER-------------G-SKGAVIVNEGDS----FNLNTPTNLEDGNYDNHGSAT---------DS-- 44 O50582/390-465 94.8% 20.0% LRNPGGDEQVAMIER-------------G-TKGAVIVNLVDG---DKQINSETNLADGTYTDKVSGR---------Q--- 45 AMY_BUTFI/530- 96.1% 17.1% LSNPGGNIQTLMIER-----------YNDTVQGAVIVNAAQT---RTTISTETHLSDGIYPDQVEGS---------NSV- 46 CDGT_BACSP/437 94.8% 30.3% QERWINND-VLIYER-----------KFGNNVAVIAVNRNVNT-SASITGLVTSLPAGSYTDVLGG-------LLNG-NN 47 CDGT_BACSS/444 93.5% 30.3% QQRWINND-VYVYER-----------KFGKSVAVVAVNRNLST-PANITGLSTSLPTGSYTDVLGG-------VLNG-NN 48 CDGT_THETU/437 94.8% 28.1% QQRWINND-VYIYER-----------KFGNNVALVAINRNLST-SYNITGLYTALPAGTYTDVLGG-------LLNG-NS 49 AMY_BACCI/439- 88.3% 32.1% QQRWINND-VYIYER-----------KFGNNVAVVAINKNLTS-SYSIAGLNTSLPSGTYTDVLAN-------SLSG-NS 50 142654/438-522 94.8% 31.5% TERWVNND-VLIIER-----------KFGSSAALVAINRNSSA-AYPISGLLSSLPAGTYSDVLNG-------LLNG-NS 51 CDG2_PAEMA/438 94.8% 29.5% TQRWVNSD-VYVYER-----------KFGSNVALVAVNRSSTT-AYPISGALTALPNGTYTDVLGG-------LLNG-NS 52 AMYM_BACST/442 93.5% 27.0% TQRWINND-VYIYER-----------KFFNDVVLVAINRNTQS-SYSISGLQTALPNGSYADYLSG-------LLGG-NG 53 CDGT_BACST/437 94.8% 22.5% EQRWINGD-VYVYER-----------QFGKDVVLVAVNRSSSS-NYSITGLFTALPAGTYTDQLGG-------LLDG-NT 54 O30565/421-504 93.5% 27.0% TERWINSD-VYIYER-----------KFGNSIVLTAVN-SSNR-NQTISNLNTSLPQGNYTDELQQ-------LLDG-NT 55 I39805/432-515 93.5% 24.7% SERWINSD-VYIYER-----------SFGDSVVLTAVN-SGDT-SYTINNLNTSLPQGQYTDELQQ-------LLDG-NE 56 512550/425-509 94.8% 19.1% TERWINED-VFIYER-----------SFNGEYALIAVNRSLNH-SYQISSLVTDMPSQLYEDELSG-------LLDG-QS 57 AAK34149/438-5 93.5% 23.3% EQRWISDH-VLVFER-----------KFGNHVALVAINRDQTN-GYTITNAKTALPQNSYKDKLEG-------LLGG-QE 58 Q9K5L5/447-534 94.8% 23.9% QQRWINDD-VYVYER-----------RFGDNVLLTAINKG-SH-EYRLERAGTALPAGTYRDVLGG-------TFGG-SD 59 Q9UWN2/455-537 93.5% 25.0% ATRYVSDD-IYIFER-----------KFFDNVVLVAINRNLNS-PYVVSNVYTSLPDGSYNDYLGG-------LLNG-VG 60 APU_THETY/833- 89.6% 17.2% ETLYANGD-VYAFGRRIINGKDTFGKSYPDSVAIVVINKG-DA-KQVSIDTTKFIRDG---VAFTD-------ALSG-KT 61 APU_THETU/832- 92.2% 17.2% ETLYAQND-VYAIGRRIINGKDAFGTSYPDSAAIVAINRSKSD-KQIAIDTTKFLRDG---VTFKD-------LINNNVS 62 Q9EZZ4/957-103 92.2% 20.5% ETVYAKGD-VYVFAR-----------QYGKDVALIAINRGNSA-QTVQLDVSSIIPNG---TSFVD-------ELHGEYE 63 AMYB_PAEPO/111 87.0% 18.6% REKWVDDS-FYSFQR-----------SKNGDEAIVFINNSWNS-QTRTIGNFDNLSNG---TRLTN-------QLSN-DS 64 Q60051/405-482 87.0% 17.4% AEKWVDDT-FYAFQR-----------SYNGDEVVVMINNSWNS-QTRTVPNIDRVANG---QTLYN-------RMGT-DK 65 CDGT_KLEPN/475 92.2% 23.2% TELWVNDD-ILVFER-----------RSGNDIVIVALNRGEA---NTINVKNIAVPNGVYPSLIGN---------NS--- 66 Q60224/404-479 93.5% 17.3% IDRHVDDD-VYVFER-----------E-GN--LLAGINTADE---DRTVTVQTDWRTEPLVDHAG----------DGAN- consensus/100% ......t...h..tR.................hhhhhs................h..t...................... consensus/90% .phh.sst..hhhtR.............s.s.shhhhN.t.........th.othstG.Y.shh............s... consensus/80% tphassss..hhatR.............G.shuhlshN.t.....th..shtTsLPsG.Ysshhts.........su... consensus/70% pphWssss..hsFtR.............G.stuhlAhNtst....shppshpTsLPsGsYsDllsu........hsG.s. cov pid 81 . 1 . . ] 123 1 AMY_STRVL/381- 100.0% 100.0% ---------VTVNS----SG-QFTATLAANT---AVALHVNAT 2 O86876/388-464 100.0% 75.3% ---------VTVNG----AG-RFTATLGAGT---AVALHVGAR 3 AMY_STRLM/381- 100.0% 71.4% ---------VTVGS----DG-TFTATVAAGT---ALALHTGAR 4 O24781/409-494 98.7% 58.6% STGCSAGGVVTVDA----AG-TFTATVDQNS---AFALHVGAK 5 AMY_STRTL/382- 100.0% 67.5% ---------VTVDS----AG-RFTAALGPDT---ALALHNGRT 6 O65947/375-451 100.0% 64.9% ---------CSVNG----SG-QLTATLAANT---ALAVYAGKS 7 AMY_ALTHA/383- 100.0% 45.5% -------EVITVNS----DG-TINLNIGAWD---AMAIHKNAK 8 Q9L4I9/377-453 97.4% 44.3% -------QCIVVE-----DG-QLTLSVPAMS---AAALHVGAP 9 Q59964/374-457 100.0% 50.0% ---------VTVGD----DG-AVQATVPARG---ALALHTGAQ 10 AMY_STRHY/369- 96.1% 49.4% ---------VTVGD--------TEAQVDAAK---SVALHVGAT 11 AMY_THECU/401- 98.7% 45.3% ---------YQVSG-----G-KFTATVPANG---AVALHVEAP 12 AAK17994/373-4 100.0% 40.4% ---------ISVDS----SG-YAHFTVASHN---AAAIHVGAK 13 Q9KK55/396-477 97.4% 34.9% ---------ISVDN----NG-FASFSVGPES---ASAIHGGAR 14 Q9I9H6/423-511 100.0% 29.2% ---------IQVGG----DG-RAHFKISSRDEDPFVAIHAESK 15 Q91337/205-293 100.0% 30.3% ---------ISVGN----TG-LANFKIKSLAEDPFVAIHINAK 16 Q98942/423-511 100.0% 36.0% ---------VYVSS----DG-KANFQISNSDEDPFVAIHVDAK 17 BAB39466/432-5 100.0% 37.1% ---------VYVGS----DG-NAYFSISNSAEDPFIAIHVESK 18 AMY_PECMA/412- 100.0% 39.3% ---------IQVGN----DG-NAHFSISNSSDDPMIAIHVGAK 19 O02622/421-509 100.0% 37.1% ---------VHVGG----DG-HAHFHISSGSDDPVVAIHIGAK 20 Q23834/406-494 100.0% 40.4% ---------VTVGS----DG-RANISIGSSEDDGVLAIHVSAK 21 O77407/405-493 100.0% 39.3% ---------VVIES----NG-MARININRSEYDGVLAIHINAK 22 Q9U8X5/403-491 100.0% 37.1% ---------VTVGS----DG-NANIEIGAGEEDGVLAIHVKAK 23 O97396/397-484 98.7% 39.3% ---------VNVDG----NG-QAYITLSSGEDDGFLAIHVGAK 24 Q9N2P9/391-478 98.7% 38.2% ---------VTVRG----DG-KATIHLSSGEPDGILAIHVSAK 25 Q9U406/394-481 98.7% 41.6% ---------VNVDS----SG-KAAISLSTNEEDGVVAIHVNAK 26 Q26855/402-489 98.7% 42.7% ---------ITVGG----DG-YADISLGANEDDGVIAIHVNAK 27 AMY_TENMO/383- 98.7% 37.1% ---------VTVGD----NG-SADISLGSAEDDGVLAIHVNAK 28 Q26193/423-511 100.0% 38.2% ---------VTVGG----DG-KAYIEITTMEDDGVLAIHANSK 29 Q23767/407-495 100.0% 36.0% ---------VTVGA----NG-LAQITIQTSAWDGVLAIHADSR 30 Q25590/409-497 100.0% 38.2% ---------VTVGN----DG-RAHISVGANEYDMMLAIHVGTQ 31 Q16924/402-490 100.0% 37.1% ---------VQVGG----DG-RANIQIPAHGDDGVLAIHINAK 32 O02652/402-486 96.1% 27.3% ---------LQCKS-----V-EMDVPISIFR-PKVMMVFWPSM 33 Q17059/413-501 100.0% 37.1% ---------VIVEP----NG-FASISIRANAEDGVIAIHSEVS 34 Q9XZ45/409-496 98.7% 30.3% ---------VIVS-----KR-KAAVILRADDNYGVLAIHSESK 35 O76263/403-491 100.0% 40.4% ---------VSVDG----NG-YGYIHIGTEDFDGVLAIHTDAK 36 6850160/404-49 100.0% 39.3% ---------VTVNE----NG-YGYIHIGSDDFDGVLALHVDAK 37 O18552/405-493 100.0% 37.1% ---------VYVGD----DG-LGFVSIDSDDFDGVLAIHVDAR 38 Q9Y196/428-519 100.0% 33.7% ---------IQVDK----NG-LADIYVGHDELDAFVAYHIGAR 39 O02413/656-735 92.2% 30.0% ---------VNVDA----NG-DAEITLPKNS---VVAIYIPSR 40 P91982/427-511 98.7% 27.9% ---------ITVRD----DH-TSYLSVPSNS---IVAISLDSK 41 Q48502/402-477 96.1% 25.3% ---------FTVK-----NG-YLTGTIQGRE---VVVLYGDPT 42 AMY_BACSU/393- 96.1% 24.1% ---------FQVN-----DG-KLTGTINARS---VAVLYPDDI 43 AAA63759/392-4 92.2% 26.9% ---------LTVS-----QG-RMTGTVPANS---IIVIYNKNS 44 O50582/390-465 94.8% 20.0% ---------FNVS-----NG-RITGSVPSRS---AVVLYDDQA 45 AMY_BUTFI/530- 96.1% 17.1% ---------FLVK-----DG-VLSGSVEGEG---VVVLSEKM- 46 CDGT_BACSP/437 94.8% 30.3% ---------LTVG----SGGSASIFTLAAGG----TAVWQYTT 47 CDGT_BACSS/444 93.5% 30.3% ---------ITS-----SNGSVNSFTLAAGA----TAVWQYTA 48 CDGT_THETU/437 94.8% 28.1% ---------ISVA----SDGSVTPFTLSAGE----VAVWQYVS 49 AMY_BACCI/439- 88.3% 32.1% ---------ITVG----SSGAVNTFTLQAGG----EAS----- 50 142654/438-522 94.8% 31.5% ---------ITVG----SGGAVTNFTLAAGG----TAVWQYTA 51 CDG2_PAEMA/438 94.8% 29.5% ---------ITVN-----GGTVSNFTLAAGG----TAVWQYTT 52 AMYM_BACST/442 93.5% 27.0% ---------ISV-----SNGSVASFTLAPGA----VSVWQYST 53 CDGT_BACST/437 94.8% 22.5% ---------IQVG----SNGSVNAFDLGPGE----VGVWAYSA 54 O30565/421-504 93.5% 27.0% ---------ITVN----ANGSANSPQLQANS----VAVWQVTK 55 I39805/432-515 93.5% 24.7% ---------ITVN----SNGAVDSFQLSANG----VSVWQITE 56 512550/425-509 94.8% 19.1% ---------ITVD----QNGSIQPFLLAPGE----VSVWQYSN 57 AAK34149/438-5 93.5% 23.3% ---------LIV----GADGTISSFELGAGQ----VAVWTYEG 58 Q9K5L5/447-534 94.8% 23.9% ---------LTVEDGDGTDRSTVAPVLGAGQ----VAVWSYRA 59 Q9UWN2/455-537 93.5% 25.0% ---------ITV-----SSG-TFSVELPAGS----VSVWQYKA 60 APU_THETY/833- 89.6% 17.2% ---------YTVQ-----DGKIVVEVGSMDG----AILISDTG 61 APU_THETU/832- 92.2% 17.2% ---------YSIS-----NGQIVIDVPAMSG----VMLISDDG 62 Q9EZZ4/957-103 92.2% 20.5% ---------VTVS-----NGKVQLNIPAFDG----RMLFGKVT 63 AMYB_PAEPO/111 87.0% 18.6% ---------VQIN-----NGSITVTLAPKE-----VKVFTK-- 64 Q60051/405-482 87.0% 17.4% ---------VTVN-----NGSITATLGPKE-----VKIFTK-- 65 CDGT_KLEPN/475 92.2% 23.2% ---------VSVA-----NK-RTTLTLMQN-----EAVVIRSQ 66 Q60224/404-479 93.5% 17.3% ---------VTTG-----PDCTVELTVPAEG----WVMYGPRD consensus/100% .........h................................. consensus/90% .........h.Vt.....ss....h.l..tt....hsla.... consensus/80% .........lpVt.....sG.hh.hplsstt....hula..st consensus/70% .........lsVs.....sG.hsphplssst....lAla.tsp