Family alignment for the Agro_virD5 domain, displayed in

                       cov    pid   1 [        .         .         .         .         :         .         .         . 80 
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     VKLGPAERAAYENWCEPGRPTWKDLIIKARVDPIDDVIWLRDLEEDTPSTFRYEGMPLGLGERKAYENWQEDAQPTWEDL    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     MRLGAAEQSACETWDGGDRPTWKDLILSARVNRINGSAWSFNAGETTSSAFVYEGVPLGEEERRTYEQWAEPAQPSWEEL    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     MRLGAAERSAYETWDRADRPSWKDLILSARLNAIDSFAWNVDVGESTSSTFVYEGVPLAEGERRAYEEWVEPGQPSWQQL    
4 Q44207_AGRRH/62-0  99.9%  63.4%     VKLGAAEREAFEKWGGSGRPTWKDLVVKARLDAIDSSAWLSDFDEDSPSTFRYEGIPLGEAERQAYKKWQGDAQPTRDDL    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     MKLGAAEREAYENWCLSNRPTWKDLVLRARLDAIDSSAWLPDLGEESPLIFRYEGIPLGEGERQAYKEWQEEAQPTWEDL    
  consensus/100%                      h+LGsAEptAhEpWs.ssRPoWKDLllpARls.Iss.hW..shtEpos.hFhYEGhPLu.tERpsYcpW.t.uQPohppL    
  consensus/90%                       h+LGsAEptAhEpWs.ssRPoWKDLllpARls.Iss.hW..shtEpos.hFhYEGhPLu.tERpsYcpW.t.uQPohppL    
  consensus/80%                       h+LGAAERpAaEsWstusRPTWKDLllpARlssIDusAW..DhsEsosSsFhYEGlPLGEuERpAYcpWtEsAQPoW--L    
  consensus/70%                       h+LGAAERpAaEsWstusRPTWKDLllpARlssIDusAW..DhsEsosSsFhYEGlPLGEuERpAYcpWtEsAQPoW--L    

                       cov    pid  81          .         1         .         .         .         .         :         . 160
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     VVSARMTELGRPHGITGEYTSLAGSKNTSSISLKRKRSNLID-DENSSGSFSYDGMKLGEAERSAYGDWAEAEPPTWKDL    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     VISARIEELNTLASIPNACGRCQTDQALRADASKRKREDLINQKKTFLEPFEYDGMRLGSPERAACKNWSKPHPPTSNEL    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     VVNARIEELNTSAAIPNECSPLQ--EEFRSEAPKRKRTSSIGQKNGFPEPFEFDGMRLGSPEREAYENWSKPQPPSWKDL    
4 Q44207_AGRRH/62-0  99.9%  63.4%     IVNARLAELGQSGWIVDEYVSHEDVEDFRSDSLKRKRSNSADRDENPPASFRHDGMRLGEPERAAHDNWCEPEPPTWKDL    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     VVNARMAVPDPCADVADEHNPLKEGEEFRSEASKRKRKKPIDQDENSPTSFYYDGMRLGEPEREAYDNWGNAEPPTWKDL    
  consensus/100%                      llsARht..s..t.lssths.ht..pthpu.u.KRKRpp.hs.cps..tsF.aDGM+LGpsERtAhtsWspspPPo.p-L    
  consensus/90%                       llsARht..s..t.lssths.ht..pthpu.u.KRKRpp.hs.cps..tsF.aDGM+LGpsERtAhtsWspspPPo.p-L    
  consensus/80%                       VVsARhtELspsusIssEhsshptscphRS-u.KRKRps.Ispccs.stsFpaDGMRLGpPERtAacNWucscPPTWKDL    
  consensus/70%                       VVsARhtELspsusIssEhsshptscphRS-u.KRKRps.Ispccs.stsFpaDGMRLGpPERtAacNWucscPPTWKDL    

                       cov    pid 161          .         .         .         2         .         .         .         . 240
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     VLRARVSSINDSAWLFD-SQTSSSSFEYNGVPLGEPERQALRQWQGDAQPTWEDLVVNARMAELCH--AGWIEG-QKGCF    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     IIEGRLRAISNSTWHNE--LDDSSIFEYEGMPLGQGERLAYEKWLEPAQPGWEDLVVDARIAELAELYPSASTECEHGRF    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     IVDARLHAIDTSTWLNE--SNDTSVFEYEGVPLGEGERLAYEKWLEPAQPGWEDLVVDARVAELHQSAPTWCEH------    
4 Q44207_AGRRH/62-0  99.9%  63.4%     ILKARLDAIDSSAWLPQLNEDSPSTFRYEGIPLGEGELQAYEKWQGDAQPTWEHIVVNARLAELGH--AFWIAD-EHNAL    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     VLKARLDAIDSSAWLFA-SEGSSSTFEYEGIPLGEGERQAYKEWQEDAQPTWEDLVINARMAELEH--PSWITD-EHNSL    
  consensus/100%                      llcuRlpuIssSsWh.t...sssS.FcYpGhPLGpsEh.AhcpW.tsAQPsWEclVlsARhAELtp..s.h.tt......    
  consensus/90%                       llcuRlpuIssSsWh.t...sssS.FcYpGhPLGpsEh.AhcpW.tsAQPsWEclVlsARhAELtp..s.h.tt......    
  consensus/80%                       llcARLcAIssSsWL.p..pssoSsFEYEGlPLGEGER.AYccW.tsAQPsWEDLVVsARhAELtc..ssWhpc.p+sth    
  consensus/70%                       llcARLcAIssSsWL.p..pssoSsFEYEGlPLGEGER.AYccW.tsAQPsWEDLVVsARhAELtc..ssWhpc.p+sth    

                       cov    pid 241          :         .         .         .         .         3         .         . 320
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     EKRGEA-LHASERGSQRPIVQRTDSSDSFLYDGRRLGAPERTAYERWSKRERPTWEDLILDAHQARIESDAVTTQAIGQS    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     EEGEDVPLKERVRTFPVPIIAEQEVGVSFLYDGVALGAAERAAYDRWSKPDRPNWDDLILDAHQTAVEHDGFLRPAIGEA    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     QPGNDVSSNESGRISGVPINAEQVSRAFFVYDGVALGAAERAAHDRWNRPDRPTWEDLIIVARQAAIEGDAVSNGMIGKT    
4 Q44207_AGRRH/62-0  99.9%  63.4%     EEAVESRSDASKHNLERPVDQEAGSSASFTYDGMRLGAPEYAAHKRWSKPKRPTWEDLILDARQAAIESASVSSLQIGKE    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     EENLEFRPDARQASLKDSTDQRKSSSASFIYDGMKLGEPEHAAYENWSKPERPSWEALILDARQASIASSSVSNSLLAKT    
  consensus/100%                      p.t.-...ptp.t....sh.tct.sts.FhYDGhtLGtsEhsAacpWs+.cRPsW-sLIlsA+Qstlttsuh.p..lupt    
  consensus/90%                       p.t.-...ptp.t....sh.tct.sts.FhYDGhtLGtsEhsAacpWs+.cRPsW-sLIlsA+Qstlttsuh.p..lupt    
  consensus/80%                       Ecs.-s..ctpt+s.thPlstcpsSusSFlYDGhtLGAsE+AAa-RWSKP-RPoWEDLILDA+QAuIEusuVos.hIGcs    
  consensus/70%                       Ecs.-s..ctpt+s.thPlstcpsSusSFlYDGhtLGAsE+AAa-RWSKP-RPoWEDLILDA+QAuIEusuVos.hIGcs    

                       cov    pid 321          .         .         :         .         .         .         .         4 400
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     SSLVFLYEGKSLGCREREAYEKWRQPAQPRWQNLVVNARLAELDPSVWIADERDPLDDGDALGRPSYTSLTDRSDVPLDD    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     TSSVFLYEGMSLGNAEREAYGRWRQPAQPRWQNLVVNARQAELDPSAWILDEHDPFEDSEAAAFPAQATRANTSQPALDN    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     SSSVFLYEGMLLGDAERQAYGRWRQLAQPRWQNLVVNARLAELDPAAWIPDEHDPSEHGGATGLLSQASTTNKSRLSLGD    
4 Q44207_AGRRH/62-0  99.9%  63.4%     PSSVFLYEGKSLGDAERQAHGRWRQLAQPRWQNLVVNARLAELDPSVWIPDEHDPFEEGEVPTPAPQASTASKSNPTLGG    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     SSPVFLYEGMSLGDAERQAYGRWRQPAQPRWQNLVVNARLADLDPLAWIPDEHDPFAEAEALSPTSQSSGANKSNRALGN    
  consensus/100%                      sS.VFLYEGh.LGstERpAat+WRQ.AQPRWQNLVVNAR.A-LDP.sWI.DE+DP.tcuts.s..s.sohsspSp.sLss    
  consensus/90%                       sS.VFLYEGh.LGstERpAat+WRQ.AQPRWQNLVVNAR.A-LDP.sWI.DE+DP.tcuts.s..s.sohsspSp.sLss    
  consensus/80%                       oSsVFLYEGhSLGsAERpAYGRWRQ.AQPRWQNLVVNARLAELDPusWIsDEHDPh--u-Ahu.suQuStss+Sp.sLss    
  consensus/70%                       oSsVFLYEGhSLGsAERpAYGRWRQ.AQPRWQNLVVNARLAELDPusWIsDEHDPh--u-Ahu.suQuStss+Sp.sLss    

                       cov    pid 401          .         .         .         .         :         .         .         . 480
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     QSIYHRSDLVREQVSESSQKQFAACSESETIPVSWFTASGLDANNTENIAASDPVDGTGGVKRLGSKSDRTVTASIHDVN    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     QPVSHRPGFATGATRGKTHDANPSTGQPGTRRTLCFESSGRDVGEPQSVEDRNCFYGVGKVRRLGAKSYQRDEATTYSAS    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     QPEARSPSLAREPAQQPTHVQNLTCAQLEARRALYFGPSGRDADQTASIADSNRLDEVSKVKRLGAKSRRGAKATAYDVI    
4 Q44207_AGRRH/62-0  99.9%  63.4%     QSESGRPDRAHE-TQETTHLQSPTRSQLETRRALYFGSPGRDAIQTESIANCDRSDGAGKVKRLGTKGRRAVNPITHGVN    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     QSDSGRPAFAYLAAQEASHLQSPACSQLETRRALNFGSPGPDANPTESIAKCNRLDGVSKIKRLGTKGRRAVNATIHGGK    
  consensus/100%                      Qs..tpsshsh..spt.op.t..spup.tsh.s..FtssG.Ds..stslttps...tsutl+RLGsKu.ptsps.hass.    
  consensus/90%                       Qs..tpsshsh..spt.op.t..spup.tsh.s..FtssG.Ds..stslttps...tsutl+RLGsKu.ptsps.hass.    
  consensus/80%                       Qs.utRPshApt.sppsoHhQssssuQ.ETRRsLhFsusGhDAspTpSIAsssphDGsuKVKRLGsKucRsspAohassp    
  consensus/70%                       Qs.utRPshApt.sppsoHhQssssuQ.ETRRsLhFsusGhDAspTpSIAsssphDGsuKVKRLGsKucRsspAohassp    

                       cov    pid 481          .         5         .         .         .         .         :         . 560
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     SSTKRLLLNEFGLEAPRPSPEKTVRLRSDNIGTYGSRRNERMRLATETGAYESEHIFGFKAVHDTARATKEGRRLERPMP    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     SSTKRLSPDIGRCIASSSPPKKAVVSKVDNIGTYGSRKNERVRLATETGKYESEHIFGFKVVHDILRSTKEGRRLERPMP    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     SSAERLSSHEGCLTVQSTQPEKAACSRSDNIGTYGSRKNERARLATETGKYESEHIFGFKVVHDTLRSTKEGRRLERPMP    
4 Q44207_AGRRH/62-0  99.9%  63.4%     SSVQGPLSDERGHEAPFSSSEQVVRSRGDNIGTYGSRKNERARLATETGKYESEHIFGFKVVHDTLRATKEGRRLERPMP    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     FGAQGLLSEDCGQAAEPSPSEQTTRPRTDNIGTYASRKNERARLATETGKYESEHIFGFKVVHDTLRATKEGRRLERPMP    
  consensus/100%                      .uspt...p.ht..s..s.scpssh.+sDNIGTYuSR+NERhRLATETGtYESEHIFGFKsVHDhhRuTKEGRRLERPMP    
  consensus/90%                       .uspt...p.ht..s..s.scpssh.+sDNIGTYuSR+NERhRLATETGtYESEHIFGFKsVHDhhRuTKEGRRLERPMP    
  consensus/80%                       SSsptL.sc-tshtA..ossEpsspsRsDNIGTYGSRKNERsRLATETGKYESEHIFGFKVVHDTLRuTKEGRRLERPMP    
  consensus/70%                       SSsptL.sc-tshtA..ossEpsspsRsDNIGTYGSRKNERsRLATETGKYESEHIFGFKVVHDTLRuTKEGRRLERPMP    

                       cov    pid 561          .         .         .         6         .         .         .         . 640
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     AYLEYKGLHRQHVGTGRGRTKLVGRGWPDDTSYRSDQRATLSDPVARSEGATASNGYQLNQLGYAHQLASDGLQSESPDG    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     AYLECKSLHRQHVGTGKGRNRLVGRGWSDDASYRSDQRATLSDPVASEEGVAASNGYQLNQLGYAHQLANGGLQSETPAE    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     AYLECKELHRQHVGTGRGRTRLVGRGWPDDASYRSDQRATLSDPVASTEGATASNGYQLNQLGYAHQLANDGLQSETPDG    
4 Q44207_AGRRH/62-0  99.9%  63.4%     AYLECKELHRQHVGTGRGRTRLVGRGWPDDASYRSDQKGTLSDPVASAEGVTASNGYQLNQLGYAHQLANDGLQSESPDG    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     AYLEYKELHRQHVGTGRGRTGLVGRGWPDDASYRADQRATLSDPVASAEGATASNGYQLNQLGYAHQLATHGLQSETPDG    
  consensus/100%                      AYLEhKtLHRQHVGTG+GRstLVGRGWsDDsSYRuDQ+uTLSDPVAptEGssASNGYQLNQLGYAHQLAstGLQSEoPst    
  consensus/90%                       AYLEhKtLHRQHVGTG+GRstLVGRGWsDDsSYRuDQ+uTLSDPVAptEGssASNGYQLNQLGYAHQLAstGLQSEoPst    
  consensus/80%                       AYLEhKpLHRQHVGTGRGRT+LVGRGWPDDASYRSDQRATLSDPVASsEGsTASNGYQLNQLGYAHQLAscGLQSEoPDG    
  consensus/70%                       AYLEhKpLHRQHVGTGRGRT+LVGRGWPDDASYRSDQRATLSDPVASsEGsTASNGYQLNQLGYAHQLAscGLQSEoPDG    

                       cov    pid 641          :         .         .         .         .         7         .         . 720
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     VALPIQVATTSYNYTVSRDPVLVPPDKNEAPQLLHLGPRGQTEAVLARETALTGKWPTLEREQQVYREFLALYDVKKDLE    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     VIIPLQIATTSYNYTVSRDPVLLPPTKEQSSQLLHLGPRGQTEALLARETALTGKWPTREREQQVYREFLALHAIKKDLE    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     VIMPLQVATTSYNYTVSRDPVLSPPSKEQAPELLHLGPRGQTEAVLARETALTGRWPTREREQQVYREFLALYDVKKDLE    
4 Q44207_AGRRH/62-0  99.9%  63.4%     LTMPIQVATTSYNYTVSRDPVLSPPSKEQASQLLHLGPRGQTEAVLARETALTGKWPTLERERQVYQQFLALYEIKQDLD    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     VTMPIQVATISYNYTVSRDPVLSPPSKEQAPPLLHLGPRGQTEAVLARETALTGKWPTLERECQVYQRFLALYDVKKDLD    
  consensus/100%                      lhhPlQlAThSYNYTVSRDPVL.PPsKppus.LLHLGPRGQTEAlLARETALTG+WPThEREpQVYppFLALatlKpDL-    
  consensus/90%                       lhhPlQlAThSYNYTVSRDPVL.PPsKppus.LLHLGPRGQTEAlLARETALTG+WPThEREpQVYppFLALatlKpDL-    
  consensus/80%                       VhhPlQVATTSYNYTVSRDPVLsPPoKEQAspLLHLGPRGQTEAVLARETALTGKWPThEREpQVYpcFLALY-lKKDL-    
  consensus/70%                       VhhPlQVATTSYNYTVSRDPVLsPPoKEQAspLLHLGPRGQTEAVLARETALTGKWPThEREpQVYpcFLALY-lKKDL-    

                       cov    pid 721          .         .         :         .         .         .   ] 784
1 Q9JN11_9RHIZ/57-0 100.0% 100.0%     AKSVGVRQKKKEVSSALDRTARLIITSPSKARSE-AETEKAIDELDDRRVYDPRDRAQDKAFKR    
2 Q8VT84_9RHIZ/62-0  99.7%  53.4%     AKPISSRKKKAALVSALNRTAGLI-ARPYESWAVNRRVENRADKIDQPRTYDPRDHRRDESFGR    
3 Q9F584_AGRRH/1-0   99.0%  59.5%     AKTLGLRKKKAALVSALNRTAASIGTSPLKAQSSSAEVEKATHEFDERRVYDPRDRGRDKALQR    
4 Q44207_AGRRH/62-0  99.9%  63.4%     AKQLGVRQKKQSLAAALDRTAALIGASPSKAQSQAAEGANGAEPPEERRVYDQRDRSRDNAFNR    
5 Q9R6B6_9RHIZ/62-0 100.0%  63.1%     AKQLGVRQKKQALVAALNRTAGLIGASPLEAQSSTAKVEYTTDEPDERRVYDPRDRGRDKAFNR    
  consensus/100%                      AK.lu.RpKKttlsuALsRTAt.I.spP.cu.u..tcst.thc..-p.RsYD.RD+tpDpuhtR    
  consensus/90%                       AK.lu.RpKKttlsuALsRTAt.I.spP.cu.u..tcst.thc..-p.RsYD.RD+tpDpuhtR    
  consensus/80%                       AKplGlRpKKtuLsuALsRTAuLIhsSP.cApSpsAcsEpss-c.D-RRVYDPRDRuRDcAFpR    
  consensus/70%                       AKplGlRpKKtuLsuALsRTAuLIhsSP.cApSpsAcsEpss-c.D-RRVYDPRDRuRDcAFpR