cov pid 1 [ . . . . : . . . 80 1 O56869_9ALPH/44-0 100.0% 100.0% DWLRNPGPPALVNAPKY--V--------RPSKCSASFLAKNALTELQFADWDKIQHVLKTINIDIFSCVPVGENGLCNMD 2 Q805Y1_CHV1/28-0 99.1% 22.0% ELPDAA-TAPRPYATGR--LSQAQIMPQPPVPVPPAALYNRLLEDLGFGDGPALCTILDSWNEDLFSGLPANPDLYRECQ 3 Q3C1X7_9ALPH/24-0 99.4% 20.4% GGPKNTPAAPPLYATGR--LSQAQLMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSGFPTNADMYRECK 4 Q9DHB7_9ALPH/42-0 98.0% 22.9% AIPPAFGGEAIDYTTPIIAPFSEKLSLPSPEAASPNLLYDRLILELDFAEGPSLLAKLERVNVDLFSCLPLNSHLYKHAK 5 Q782P6_9ALPH/49-0 97.4% 20.2% TLCSQTRCAEQSASFSLSAPFSIKISLPSPNPNPPNRLYNRLLHELDFTEGPSLLSRLEKLNVDLFSCFPINGHLYEHAT 6 Q9E205_9ALPH/29-0 98.0% 26.6% SLLGDVQEH--NAGSLY--S-SVQVGTPPPRVASPAVLYQQLINDLHFSEGPRIIALLETCNEDIFSCFPLNEDLYTDTI 7 Q4JQY8_HHV3/31-0 98.5% 24.3% SLFGDVASDIGSETSLY--SHAVKTAPSPPWVASPKILYQQLIRDLDFSEGPRLLSCLETWNEDLFSCFPINEDLYSDMM 8 Q8B635_9ALPH/6-0 97.1% 23.9% SLLGAVGYSNNFKGKQS----------LPIKASSPSSLIKNLLDELNFPEGPSLLSSMEKWNEDLFSCIPRFLEIYIENS 9 ATIN_EHV1B/67-4 97.1% 21.5% GMLSAIESV-----YSI--PTKKRLALPPPKAASPGALYQRLQGELGFPEGQTLLSAMEKWNEDMFSALPGHVDLYTEIA 10 Q80KJ3_9ALPH/13-0 92.4% 25.1% ALLG-------GAAPGR--PP----VVAVPRAASPDALYQRLISDLAFDEGPALLSAMERWNEDLFSCLPGNEDLYARMV 11 Q6X259_9ALPH/13-0 97.7% 22.7% SLLGPPPAA--GSAPDG--PSPARFALPPPRPAPLAALLERMQTELGFPEGPALLRAMERWNEDLFSCLPTNADLYADAA consensus/100% th..............................ss.t.Lhpph..-LtFsth.tl.t.hcphN.DhFSshPh..phh.p.. consensus/90% sh.t.........s..h...........sP.ssssshLhpph.t-LtFs-Gstlhthh-phN.DlFSshPht.chYtch. consensus/80% sh.ss........s..h...........sP.sssPshLhppLlp-LsFs-GPtLhshh-phN.DlFSshPhs.clYtch. consensus/70% ulhsss.ss..s.usth..s...ph..ssPpsssPshLappLlp-LsFsEGPsLlshhEphNEDLFSChPhNt-LYpcht cov pid 81 . 1 . . . . : . 160 1 O56869_9ALPH/44-0 100.0% 100.0% WFSLDTEKIWTLMDSGTPNV----SPNLLITPG--PPPECIKTPEEAPAYFEAISNYFESVLAAREAEYAKLLAEYAKSL 2 Q805Y1_CHV1/28-0 99.1% 22.0% FLSTLPSDVVAWGDGHTPDR----GPIDIRAHGSAPFPSLPARREDLPAYCEALTRFFRAELRAREESYRRVLANFCSAL 3 Q3C1X7_9ALPH/24-0 99.4% 20.4% FLSTLPSDVIEWGDAYVPER----SQIDIRAHGDVAFPTLPATRDGLASYYEAMAQFFRGELRAREESYRTVCANFCSAR 4 Q9DHB7_9ALPH/42-0 98.0% 22.9% ILSTCPREVLD----AVYENTWQYTALNLNEHGKSSIPPVPASKDDLPAYVTAVQEFYLEELEAREQIYAKLFFGYCRAL 5 Q782P6_9ALPH/49-0 97.4% 20.2% LLSVSPSEVLD----AASEEKWAYTAINLNEHCGMEVPRPPLTKDGLPVYVTEIQKFFSMELEAREKSYVTLLCGYCRAL 6 Q9E205_9ALPH/29-0 98.0% 26.6% VFSTNPSDIIE----SLETSET-PEPINLITKG-CDLPSLPSTYTELPMYVENVQNTFFTELRVREKAYLRLLILYCKSL 7 Q4JQY8_HHV3/31-0 98.5% 24.3% VLSPDPDDVIS----TVSTKDH-VEMFNLTTRGSVRLPSPPKQPTGLPAYVQEVQDSFTVELRAREEAYTKLLVTYCKSI 8 Q8B635_9ALPH/6-0 97.1% 23.9% ILSTSVDEVIK----NLDNSLNYDDVIDFQVHGPETFPKTPLLEEELENYVTSVQKYFLSELKAREVTYSFLLTKYCKAL 9 ATIN_EHV1B/67-4 97.1% 21.5% LLSTSVDEVVRAGLDSLPTPSHYSPEVDLNAHGDEPFPEVPALEDDLEIYVISAQRFYLSELRTREEHYARLLRGYCVAL 10 Q80KJ3_9ALPH/13-0 92.4% 25.1% MLSASADEVAAQ--VQAPTA---DASVDLGVPGAEPMPRVPAVEEELPAYVAAVERFFVSTLRAREERYARLLDAYCRAV 11 Q6X259_9ALPH/13-0 97.7% 22.7% LLSADADAVVGAMYLAVPGD---AERLDLNAHANQPLPAPPASEEGLPEYVAGVQAHFLAELRAREERYAGLFLGYCRAL consensus/100% hhS..sptlht.....h.t.........h...s....P......pth..Yh.thtt.a...LtsRE..Y.hlh..as.uh consensus/90% hhSs.spclht....th.p.....t.hsl...u...hPt.Ph..ptL..Yhtthppha..pLcsREttYhtlhhtaCpul consensus/80% hLSssss-Vlt....thspt....t.lslts+G..shPp.Pt..-tLs.YstslppaFhsELcAREptYtpLhhtYCpul consensus/70% hLSssss-Vlp....ssssp....s.lsLps+Gs.shPpsPtpc-tLPsYVpulppaFhsEL+AREcpYspLLhsYC+AL cov pid 161 . . . 2 . . . . 240 1 O56869_9ALPH/44-0 100.0% 100.0% AKYIRHKSQKVGRGLRALELDTEEAKKRFTVLMKSEYYKGIEKLLIIFLVHLVLNACRDVARIIWVQQRDSSSVLQKVTY 2 Q805Y1_CHV1/28-0 99.1% 22.0% YRYLRASTRQLHRQAALKGRPR-DLQEMLRAAVAERYYRETARLARVLFLHLYLFLVREILWAVYAEQVMRQDLFEGLCC 3 Q3C1X7_9ALPH/24-0 99.4% 20.4% YRYLRASVRQLHRQAHMRGRDR-DLREMLRTTIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDGLCC 4 Q9DHB7_9ALPH/42-0 98.0% 22.9% IMHIIKSVLNESRGVRVSDDYV---QNKARWYISNNYYRDAVRIAKLLYLHLYLSTTRDVSQRLEAMQTSHQDLFVYLRC 5 Q782P6_9ALPH/49-0 97.4% 20.2% ACYLRQGANEPSRCDMCVGGSE-----TPRRSIAGAYYREAARFARLLYMHLYLSVTRDVSRRLEASQRKRQNLFADLRC 6 Q9E205_9ALPH/29-0 98.0% 26.6% LRHLQGISRRSSVGARSQDCEH-KYITQFKQSIRLRYYREVAKLARLLYLHLYITVTRQFSWRLFAQQSKYPDVFAAMKF 7 Q4JQY8_HHV3/31-0 98.5% 24.3% IRYLQGTAKRTTIGLNIQNPDQ-KXYTQLRQSILLRYYREVASLARLLYLHLYLTVTREFSWRLYASQSAHPDVFAALKF 8 Q8B635_9ALPH/6-0 97.1% 23.9% LLYLRYNTKSSIKGNKDINAFH-Q---KFKQNVRERYYREVANIARLLYLHLYLSVTREVSWKLHADQVLLQSVFVSLSY 9 ATIN_EHV1B/67-4 97.1% 21.5% LHYLYGSAKRQLRG---SGSDA-SLMHKFKQVVRDRYYREAANLARLLYLHLYVSVTREVSWRLHASQVINQGVFVSLHY 10 Q80KJ3_9ALPH/13-0 92.4% 25.1% LRYLHARARRD-EG-------------RLRQLVRGRYYRDVARLARLLFLHLYVATARELSWRLHADQVVAQDVFTSLRY 11 Q6X259_9ALPH/13-0 97.7% 22.7% LQHLRATAARG-RGAAGAGAQA-D---RLRQLVAARYYREASALARLAFAHMYVATAREVSWRLHSQQSQAQGVFVSLYY consensus/100% h.al...s.p...t...............p..h..tYY+th.thhhlhhhHhhl.hsRph..hh.s.Q....slh..h.h consensus/90% hhal.ttstp..ht....t.........h+..lt.pYYR-ssplA+lhahHLYl.hsR-h.htl.upQ....slF.tlph consensus/80% hpaLptpspp..cs....s..t.....ph+t.lttcYYR-suplARlLalHLYlsssR-luhtlaApQ..t.slFssLph consensus/70% hpYLptsspp..+G.t..st.t.p...ph+p.lttRYYREsApLARLLaLHLYlsssR-lSW+LaApQshtpslFsuLph cov pid 241 : . . . . 3 . . 320 1 O56869_9ALPH/44-0 100.0% 100.0% RW-ESQQLHCIFQPLLVSPGPVFLDNDPLPLQTLQHVNYVRYLLGVPVLRFSMIEE--SPSAQYIPYDKTAPSAYDVLAT 2 Q805Y1_CHV1/28-0 99.1% 22.0% DLEQARQLSCLFQPLLFVHGTVSVRGAAVAPARLREINYVRERLNLPLVRSAATEEPGAALTAAPALQTQRARSSGYFMT 3 Q3C1X7_9ALPH/24-0 99.4% 20.4% DLESWRQLACLFQPLMFINGSLTVRGVPVEARRLRELNHIREHLNLPLIRSAAAEEPGAPLTTPPVLQGNQARASGYFML 4 Q9DHB7_9ALPH/42-0 98.0% 22.9% EWGQGRQFWCIFQPMIYNHGVPMIEGRALTSLELGSSNYIRSELGLPLIRCELLEELESPVVFPPTFTATAPRSSGYLFH 5 Q782P6_9ALPH/49-0 97.4% 20.2% DWHQLRHFQCLFQPVIFNHGVVIVEGRALTAAELRTQNYVRSELGLPVMRCELVEERGMPLTAPPAFLANAPRASAYLFQ 6 Q9E205_9ALPH/29-0 98.0% 26.6% MWLENRQFTCAFHPILCNHGIVLLEGKPLSSQRLREVNYRRRQLGLPLVRCALIEEKGVPLVQRPEFSAHMPRSLGFLTH 7 Q4JQY8_HHV3/31-0 98.5% 24.3% TWTERRQFTCAFHPVLCNHGIVLLEGKPLTASALREINYRRRELGLPLVRCGLVEENKSPLVQQPSFSVHLPRSVGFLTH 8 Q8B635_9ALPH/6-0 97.1% 23.9% SWSHRRQFECIFHPILFNHGIVNLENNPLTFKELQKINYRRHILGLPLIRAGLVEEDNQPLMIPPEFSSKLPRTIGFLTQ 9 ATIN_EHV1B/67-4 97.1% 21.5% FWAQRRKFECLFHPVLFNHGVVILENDPLEFHDLQRINYRRRELGLPLIRAGLIEEENSPLEAEPLFSGKLPRTIGFLTH 10 Q80KJ3_9ALPH/13-0 92.4% 25.1% EWDQTRQLTCLFHPVLFNHGVVLLAGAPVPAAQLRAVNRRRRELGLPLVRTGLIEEDGADLVEEPPFSAALPRAAGYLSH 11 Q6X259_9ALPH/13-0 97.7% 22.7% AWPQRRQFTCLFHPVLFNHGVVALEDGFLDAAELRRLNYRRRELGLPLVRAGLVEVEVGPLVEEPPFSGSLPRALGFLNY consensus/100% .h.p.pph.ChFpPhhh..G...lts..l...tLtt.NhhR..LslPlhR.thhE....s......h..t.sps.shh.. consensus/90% .h.p.RphtChFpPllhspG.l.lcstsl..tpLpp.NahRp.LsLPllRsthhEE...slh..P.hpsphsRs.uah.. consensus/80% tW.ptRQhpClFpPllhsHGhVhlcstsls.tpLpplNYhRppLGLPLlRsuhlEE.tsPLst.P.apsphPRu.GaLhp consensus/70% pWtptRQhpClFpPlLaNHGlVhl-stsLsstcLpclNYhRccLGLPLlRsuLlEE.suPLst.PsFsuphPRu.GaLhp cov pid 321 . . : . .] 371 1 O56869_9ALPH/44-0 100.0% 100.0% IARTCLTSSGCSRA-------SHDHTYARDNEKP-NYSSSRIVLLADSALD 2 Q805Y1_CHV1/28-0 99.1% 22.0% LIRVKLDAYSEGSGSEGA-EVLREHAYSRRRERT-NYGSSIEGL-LELPDD 3 Q3C1X7_9ALPH/24-0 99.4% 20.4% LIRAKLDSYSSVATSEGE-TVMREHAYSRGRHRN-NYGSTIEGL-LDLPDD 4 Q9DHB7_9ALPH/42-0 98.0% 22.9% NIRAKMELYSNIHPSVPQLSGLSDHTYVRLTHVPVNYGTTVEVLLVDASDP 5 Q782P6_9ALPH/49-0 97.4% 20.2% CIKSKLEVYSLMHPPRPRSSARGESGRAGKAGPSCGHGTIVKAMLRDSTHP 6 Q9E205_9ALPH/29-0 98.0% 26.6% HIKAKLDVYSSKHSQEPG-NVRVDHPYARNVNNI-NYGSSVEAMIVSPPSP 7 Q4JQY8_HHV3/31-0 98.5% 24.3% HIKRKLDAYAVKHPQEPR-HVRADHPYAKVVENR-NYGSSIEAMILAPPSP 8 Q8B635_9ALPH/6-0 97.1% 23.9% QIRAKMEAYSDNHPVTPK-FPRIEHSYAKPIDPI-NYGTTIEAM-MDPPSP 9 ATIN_EHV1B/67-4 97.1% 21.5% QIRTKMEAYSDAHPATPL-FPLAEHSYSKRIGGRLSYGTTTEAM-MDPPSP 10 Q80KJ3_9ALPH/13-0 92.4% 25.1% QVRIKMEAYSRE---------YRDHTYCRPPSPVASYGSTAEAL-LPPPSP 11 Q6X259_9ALPH/13-0 97.7% 22.7% QVRAKMGAPAEAGGRL---APEREHSYARPRGAI-NYGTTPEAM-LRPPSP consensus/100% .h+.pht..u.............-pshst..t...sauo...sh.h..s.s consensus/90% .l+hKhps.u..ts........h-HsYs+..t...sYGoohcsh.ht.sps consensus/80% .l+sKh-sYup.ts......sht-HsYu+.ht...sYGoohEuh.hsssss consensus/70% pIRsKh-uYSptps..s...sht-HsYu+.hps..NYGoohEuh.hcsPsP