cov pid 1 [ . . . . : . . . 80 1 PLYD_ERWCA/24-247 100.0% 100.0% VVLGSSLKTSALTKVVFG------------------------------------------------------------SN 2 Q9Z4J4/60-319 94.4% 17.6% KIIQVTG-----AIDIS-----------------------------------------GGKAYTSFDDQKARSQISVPSN 3 PLYD_ASPNG/94-301 90.9% 19.3% NTAGELG------ITVN-------------------------------------------------------------SN 4 PELA_ERWCH/63-325 95.4% 17.1% KIIQIKG-----TIDIS-----------------------------------------GGTPYTDFADQKARSQINIPAN 5 PEL_BACSU/105-352 93.9% 16.3% KIIYIKG-----TIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPAN 6 PEL_PSEFL/55-317 93.4% 17.3% RIIKITG-----IIDIS-----------------------------------------EGKAYTTTADMKVRGRLDIPGK 7 PEL_PSESL/54-316 93.4% 16.5% RIIKERG-----VIDVS-----------------------------------------DGKPYTKTSDMKQRARLDIPGK 8 PELC_ERWCH/50-285 91.9% 17.3% LVITYTGNED--SLINA---------------------------------------AAANICGQWSKDPRGVEIKEFTKG 9 551238/49-284 91.9% 17.7% LVITYNGNED--ALIKA---------------------------------------AEANICGQWSKDPRGVEIKEFTKG 10 PLYA_ASPNG/95-302 91.4% 17.9% -YYNAGVL----GITVT-------------------------------------------------------------SN 11 PEL_LILLO/160-357 89.8% 17.1% SMVIRLKQE----LIIN-------------------------------------------------------------ND 12 PE59_LYCES/173-370 89.8% 18.5% GMNIRLHQE----MIMQ-------------------------------------------------------------SD 13 PE56_LYCES/121-318 89.8% 21.8% SMRIRLTRE----LIVS-------------------------------------------------------------SN 14 BAB40336/53-36 97.0% 15.0% YNSVPKIIYVKGTIDLNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSN 15 MP11_AMBAR/122-318 89.3% 19.0% DMVIRLDKE----MVVN-------------------------------------------------------------SD 16 MP14_AMBAR/123-315 87.3% 18.1% DMVIRLDRE----LAIN-------------------------------------------------------------ND 17 14041604/69-36 97.5% 16.9% DGTAPRIIKVKGTVDAV-SEGCEAFAAPGYDFDAYLEKYSPENWGMDTDLSAEPDDSPEGLRRVSAARQDRTIKANVPSN 18 MPA1_JUNAS/96-295 89.8% 19.6% ----NMNIKLKMPLYVA-------------------------------------------------------------GH 19 O08454/45-250 89.3% 23.8% SSSAAVIRV-SGTISLP-------------------------------------------------------SMTKVASN 20 Q9WYR4/55-279 91.4% 21.9% AEGKYVIVV-DGTIVFE-----------------------------------------------------PKREIKVLSD 21 Q9NDN2/53-282 90.9% 21.6% ANGKYIIKV-SGSINLS----------------------------------------------------GPKKYIDVSSN 22 Q40319/175-372 89.8% 18.5% SMVITLTQE----LMVS-------------------------------------------------------------SD 23 O64510/175-372 89.8% 19.0% SMIIKLQQE----LIIT-------------------------------------------------------------ND 24 Q43862/165-361 89.3% 20.8% DMVIELRQE----LIVN-------------------------------------------------------------HN 25 Q9LFP5/196-393 89.8% 18.1% DMSIRLNQE----LLIN-------------------------------------------------------------SH 26 B53240/124-320 89.3% 18.5% NMVIHLNQE----LVVN-------------------------------------------------------------SD 27 E53240/123-319 89.3% 18.1% DMIIYLQQE----MVVT-------------------------------------------------------------SD 28 9612_LYCES/128-325 89.8% 20.4% DMVIQLKQE----LVMN-------------------------------------------------------------SY 29 Q9LTZ0/135-332 89.8% 20.4% DMVIRLKKE----LIIT-------------------------------------------------------------SF 30 O24416/175-372 89.8% 18.5% DMVITLKQE----LIMN-------------------------------------------------------------SF 31 Q9SCP2/128-325 89.8% 20.4% NMMIKLKQE----LIFN-------------------------------------------------------------SY 32 Q9SV40/154-342 89.8% 21.3% NMLIRLKQE----LIIN-------------------------------------------------------------SY 33 Q9FM66/123-314 89.8% 23.3% DMVIQLKQD----LQVA-------------------------------------------------------------SY 34 O65388/110-307 89.8% 20.4% DMVIVLRNE----LIMN-------------------------------------------------------------SY 35 12322129/109-292 89.8% 22.8% DMVIVLKSQ----LMIN-------------------------------------------------------------SY 36 516728/96-295 89.8% 17.9% NMNIKLKMP----MYIA-------------------------------------------------------------GY 37 Q9FY87/47-244 89.8% 18.1% NMKIKLHKP----LLIS-------------------------------------------------------------SF 38 Q9SF49/93-291 90.4% 22.4% EPLWIVFDV-SGTINLSSFVNVS-------------------------------------------------------SH 39 Q9M3D5/45-254 90.4% 22.0% EPLWIVFAV-SGTINLNSYLSVS-------------------------------------------------------SY 40 Q9UUS4/38-296 92.9% 18.3% ASKETWNKA-ARQPIDVG------------------------------------------------------------NN 41 510104/24-246 98.5% 61.1% VINSNISAS-SLTKVNMG------------------------------------------------------------AN 42 O34819/58-279 98.0% 49.5% VLQNDLSAS-AKTTVTIG------------------------------------------------------------SN 43 S23573/95-302 93.9% 20.3% KVSVTYDKA-GILPITVN------------------------------------------------------------SN 44 Q9Y891/95-302 93.9% 20.8% KVSVKYDKA-AFSPLIVG------------------------------------------------------------SN 45 E972045/83-296 88.3% 5.1% RVTITYDNA-AKGIHIK-----------------------------------------------------------SNKT 46 CAC33162/52-26 89.3% 21.5% VYVDG--------TIKQ-----------------------------------------------------TADQVKIGSN 47 Q9Y892/57-271 89.8% 24.5% KVVVVKG------VIKG------------------------------------------------------AVNVRIGSN 48 Q9Y890/55-268 88.3% 25.7% IVVQG--------NIVG------------------------------------------------------KAKVQVGSD 49 S51509/51-264 88.8% 23.4% IIVSG--------SISG------------------------------------------------------SAKIRVASD 50 Q9WX56/62-282 90.9% 20.9% LKIVVDGT--ITPSNTS----------------------------------------------------ANKIDVKDTNN 51 Q9NDN1/50-270 90.9% 18.5% LTIYVNGT--ITPSNTS----------------------------------------------------DSKIDIKDVSN 52 Q9KGY5/68-292 92.9% 21.2% PETIYVDGV-ITDANSG--------------------------------------------------GDNSSIEIKDMDN 53 Q9KGY6/68-280 90.4% 22.0% TSKVSGDS-----CNTG----------------------------------------------------PDLIELKEISN 54 Q04085/49-263 85.3% 10.0% PLIITYSGN-EDSLIKA-------------------------------------------------------------AE consensus/100% ..............................................................................t. consensus/90% ...............h..............................................................s. consensus/80% .hhh.h.......h.hs.............................................................u. consensus/70% thhhhhtt.....hhhs.............................................................up cov pid 81 . 1 . . . . : . 160 1 PLYD_ERWCA/24-247 100.0% 100.0% KTIVGSFGGANVLTN-IHLRAESNS--SNVIFQNLVFKHDVAIKD-----------------NDDIQLYLN----YGKGY 2 Q9Z4J4/60-319 94.4% 17.6% TTIIGIGSNGKFTN--GSLVIKGVS---NVILRNLYIETPVDVAPHYEEGDG----WN---AEWDAAVIDN-----STRV 3 PLYD_ASPNG/94-301 90.9% 19.3% KSLIGEGTSG-VIKG-RGLRMVSGV--SNIIIQNIAVTDINPEYV----------------WGGDAITLD-----EADLV 4 PELA_ERWCH/63-325 95.4% 17.1% TTVIGLGTDAKFIN--GSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDG----WN---AEWDAMNITN----GAHHV 5 PEL_BACSU/105-352 93.9% 16.3% TTIVGSGTNAKVVG--GNFQIK-SD---NVIIRNIEFQDAYDYFPQWDPTDGSSGNWN---SQYDNITING-----GTHI 6 PEL_PSEFL/55-317 93.4% 17.3% TTIVGTTSNAEIRE--GFLYAK-EN---DVIIRNITIENPWDPEPKWDPTDGSAGNWN---SEYDGLTIEG-----ANNV 7 PEL_PSESL/54-316 93.4% 16.5% TTIVGTSSSAEIRE--GFFYAK-EN---DVIIRNLTIENPWDPEPVWDPEDGSAGNWN---SEYDGLTVEG-----ASNV 8 PELC_ERWCH/50-285 91.9% 17.3% ITIIGANGSSANF---GIWIKKSS----DVVVQNMRIGYLPGGA-----------------KDGDMIRVD-----DSPNV 9 551238/49-284 91.9% 17.7% ITILGTNGSSANF---GIWMVNSS----NVIVRNMRFGYMPGGA-----------------KDGDAIRID-----NSPNV 10 PLYA_ASPNG/95-302 91.4% 17.9% KSLIGEGSSG-AIKG-KGLRIVSGA--ENIIIQNIAVTDINPKYV----------------WGGDAITLD-----DCDLV 11 PEL_LILLO/160-357 89.8% 17.1% KTIDGRGANVQIAGG-AQLTVQFVH---NVIIHGIHIHDIKPGEGGLIRDSEKHSGIRTR-SDGDGISII-----GSSNI 12 PE59_LYCES/173-370 89.8% 18.5% KTIDARGVNVHITKG-AGITLQYIK---NVIIHGLHIHDIVEGNGGMVRDAVDHIGIRTK-SDGDGISIF-----GASYI 13 PE56_LYCES/121-318 89.8% 21.8% KTIDGRGKYVHIANG-AGIKIQSAS---NVIISNLRIHNIVPTAGGLLRESDDHLGLRGA-DEGDAISIF-----NSHDI 14 BAB40336/53-36 97.0% 15.0% TSIIGVGKDAKIKG--GGFLIKNVD---NVIIRNIEFEAPLDYFP-EWDPTDGTLG-EWN-SEYDSISIEG-----SSHI 15 MP11_AMBAR/122-318 89.3% 19.0% KTIDGRGAKVEIIN--AGFTLNGVK---NVIIHNINMHDVKVNPGGLIKSNDGPAAPRAG-SDGDAISIS-----GSSQI 16 MP14_AMBAR/123-315 87.3% 18.1% KTIDGRGAKVEIIN--AGFAIYNVK---NIIIHNIIMHDIVVNPGGLIKSHDGPPVPRKG-SDGDAIGIS-----GGSQI 17 14041604/69-36 97.5% 16.9% TTIIGVGRGAALKG--ASLQIKGVD---NVIVRNLTFESPVDCFP-QWDPTDGDRG-NWN-SEYDSAVVYG-----STHV 18 MPA1_JUNAS/96-295 89.8% 19.6% KTIDGRGADVHLGNGGPCLFMRKVS---HVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-----NVTNA 19 O08454/45-250 89.3% 23.8% KTIEGVGSSSVITG--QGLNIANAS---NVVVRNLTFRN----------------------WGDDAINVQ-----YSTRV 20 Q9WYR4/55-279 91.4% 21.9% KTIVGIN-DAKIVG--GGLVIKDAQ---NVIIRNIHFEGFYMEDDPRGKK-----------YDFDYINVE-----NSHHI 21 Q9NDN2/53-282 90.9% 21.6% KTIVGLNASSEIIN--GGLKIR-GS---NVIVKNLTIRGTYVEGDWDGKT-----------NDYDGIQITGK---DAHHI 22 Q40319/175-372 89.8% 18.5% KTIDGRGANVQIRDG-AGITMQFVN---NVIIHGLRIKNIKARNGGLIRDSFDHIGVRTR-SDGDAISVF-----GSSNI 23 O64510/175-372 89.8% 19.0% KTIDGRGAKIYITGG-AGLTLQFVR---NVIIHNIHIKQIKRGAGGLIIDSEQHFGLRTV-SDGDGINIF-----GATNV 24 Q43862/165-361 89.3% 20.8% KTIDGRGAQVHIMF--AQITLQNVQ---NVILHNLHIHDSKAHSGGMIRDSKRHYGLRTR-SDGDGVSVL-----SSSNV 25 Q9LFP5/196-393 89.8% 18.1% KTIDARGANVHVAHG-AGITMQFVK---NVIIHGLHIHHISESSGGMIRDSVDHFGMRTR-ADGDGLSIY-----GSSNI 26 B53240/124-320 89.3% 18.5% KTIDGRGVKVNIIN--AGLTLMNVK---NIIIHNINIHDIKVCPGGMIKSNDGPPILRQQ-SDGDAINVA-----GSSQI 27 E53240/123-319 89.3% 18.1% KTIDGRGAKVELVY--GGITLMNVK---NVIIHNIDIHDVRVLPGGRIKSNGGPAIPRHQ-SDGDAIHVT-----GSSDI 28 9612_LYCES/128-325 89.8% 20.4% KTIDGRGASVHISGG-PCITIHHTS---NIIIHGINIHDCKQSGNGNIRDSPNHSGWWDV-SDGDGISIF-----GGKNI 29 Q9LTZ0/135-332 89.8% 20.4% KTIDGRGSSVHITDG-PCLKIHYAT---NIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQ-SDGDAVAIF-----GGKHV 30 O24416/175-372 89.8% 18.5% KTIDARGVNVHIAYG-GCITIQFVT---NVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTM-ADGDGISIF-----GSSHI 31 Q9SCP2/128-325 89.8% 20.4% KTLDGRGANVHIVGG-GCITLQYVS---NIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTK-SDGDGISIF-----GSKDI 32 Q9SV40/154-342 89.8% 21.3% KTLDGRGSAVHITGN-GCLTLQYVQ---HIIIHNLHIYDCKPSAGFEKRGR----------SDGDGISIF-----GSQKI 33 Q9FM66/123-314 89.8% 23.3% KTIDGRGNNVQIAYG-PCLTLYKVS---NIIINNLYIHDCVPVKRNALSSLGGY-------SDGDGISIF-----ESRDI 34 O65388/110-307 89.8% 20.4% KTIDGRGAKVEIAYG-PCITIQHVS---HVIIHGISIHDCKPGKSGRVRSSPTHVGSRKG-SDGDAIAIF-----DSSHI 35 12322129/109-292 89.8% 22.8% KTIDGRGAKVEIANG-PCLRIRQVK---HVIIHGISIHDCKADPNG---------------MDGDGIRVF-----QSTHV 36 516728/96-295 89.8% 17.9% KTFDGRGAQVYIGNGGPCVFIKRVS---NVIIHGLYLYGCSTSVLGNVLINESFGVEPVHPQDGDALTLR-----TATNI 37 Q9FY87/47-244 89.8% 18.1% TALDGRGASVHISGP-ACLIVYRAT---DVIIHGLKIHDCKAHPPSSVMGPDSKIIQLGH-MDGDAIRLV-----TAKKV 38 Q9SF49/93-291 90.4% 22.4% TTVDGRGQKVKITG--KGLRLKECE---NVIICNLEFEGGVG-------------------PDADAIQIKP----KSHNI 39 Q9M3D5/45-254 90.4% 22.0% KTIDGRGQRIKLTG--KGIRLKECE---HIIICNLEFEGGRG-------------------HDVDGIQIKP----KSRHI 40 Q9UUS4/38-296 92.9% 18.3% KTILGVGSKGAIKG--KGLRMRG----SNVIIQNIEVSDLNHKYV----------------WGGDAIGFD-----GADLV 41 510104/24-246 98.5% 61.1% KTLIGSFQNRTLEN--IHLRATAQS--QNIILQNLIFKHSANIKA----------------NDDIQVYLN-----YGSKY 42 O34819/58-279 98.0% 49.5% KTLVGSYAKKTLKN--IYLTTSSAF--GNVIFQNLTFEHSPQING----------------NNDIQLYLD-----SGMNY 43 S23573/95-302 93.9% 20.3% KSIVGQGTKGVIKG--KGLRVVSGA--KNVIIQNIAVTDINPKYV----------------WGGDAITVD-----DSDLV 44 Q9Y891/95-302 93.9% 20.8% KSLIGQGSKGVIKG--KGIRITNSA--KNVIVQNIHITQLNPQYV----------------WGGDAVSLD-----GSDLV 45 E972045/83-296 88.3% 5.1% LVGEGDKGVLSG--KGLYFEGGV--SNIIVQNIKITNLNPGFV----------------WGGDAFTFF-----GADLIWI 46 CAC33162/52-26 89.3% 21.5% TSIIGKDANAILEG--FGVLVKEKE---NVIIRNLGVSKVLADNG-------------------DAIGVQY-----SNNV 47 Q9Y892/57-271 89.8% 24.5% KSVIGL-PGAGFDG--VALHARRQS---NIIIRNIKSTNVLASTG-------------------DGLKIEE-----STNV 48 Q9Y890/55-268 88.3% 25.7% KTIVGK-SGSSLEG--IGLTILGQK---NVIVRNMKIGKVEAAYG-------------------DAITIQL-----SKNV 49 S51509/51-264 88.8% 23.4% KTIFGE-SGSSITG--IGFYIRRVS---NVIMRNLKISKVDADNG-------------------DAIGIDA-----SSNV 50 Q9WX56/62-282 90.9% 20.9% VSIVGKGTNGEFNG--IGIKVWRAN---NIIIRNLKIHHSKIGDK-------------------DAIGIEG----GSKNI 51 Q9NDN1/50-270 90.9% 18.5% VSILGVGTNGRLNG--IGIKVWRAN---NIIIRNLTIHEVHTGDK-------------------DAISIEG----PSRNI 52 Q9KGY5/68-292 92.9% 21.2% ISIIGVADRGELSG--IGIAIRRAN---NIIIQNLKIHEVLTGGK-------------------DGISIEGDENKPTANI 53 Q9KGY6/68-280 90.4% 22.0% VSIIGVGSGALFDQ--LGIHIRSSS---NIIIQNVHVRNVKKSGSPI-----------S--NGGDAIGMES----NVRNV 54 Q04085/49-263 85.3% 10.0% KNICSQWSKDARGVEIKEFTKGTYHPWNQRIVRQLRSLDCETLLKFW-YVICALVTCRAARKHGDAIRID-----NTPNV consensus/100% hsh.u.............h.h........h...th............................................h consensus/90% hol.G..tts.h......hhh.......plIlpsl.htt.........................Dsl.l.......st.l consensus/80% pol.G.sspstl.t..htlhh..sp...slIlpslthpp.......................t.Dultl.......uppl consensus/70% pTI.GpGspsplts..hslplptsp...NlII+Nlplpshhst.s.................ssDuIsl......tuppl cov pid 161 . . . 2 . . . . 240 1 PLYD_ERWCA/24-247 100.0% 100.0% WVDHCSWPG---------HTWSDNDGSLDKLIYIGEKADYITISNCLFSNHKYGCIFGHPADDNNSAYNGY-PRLTICHN 2 Q9Z4J4/60-319 94.4% 17.6% WVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISSSRFELHDKTILIGHSDSNGSQDSGK--LRVTFHNN 3 PLYD_ASPNG/94-301 90.9% 19.3% WIDHVTTARIGR------QHYVLGTDADSRVSITNNYINGESDYSATCDGHHYWNVYLDGSSD----------KVTFSGN 4 PELA_ERWCH/63-325 95.4% 17.1% WIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGK--LHVTLFNN 5 PEL_BACSU/105-352 93.9% 16.3% WIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTS-DDGK--LKITLHHN 6 PEL_PSEFL/55-317 93.4% 17.3% WVDHVTFTDGRRTDDQNGTANGRPKQHHDGALDVKNGANYVTISYSAFKSHEKNNLIGSSDSRTT-DDGK--LKVTIHNT 7 PEL_PSESL/54-316 93.4% 16.5% WIDHVTFTDGRRTDDQNGTANGRPKQHHDGALDVKNGANYVTISYSVFRNHEKNNLIGSSDSKTP-DDGK--LKVTNHNS 8 PELC_ERWCH/50-285 91.9% 17.3% WVDHNELFAANHEC----DGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTG-------RNITYHHN 9 551238/49-284 91.9% 17.7% WIDHNEIFAKNFEC----AGTPDNDTTFESAVDIKKASTNVTVSYNYIHGVKKVGLSGSSNTDTG-RN------LTYHHN 10 PLYA_ASPNG/95-302 91.4% 17.9% WIDHVTTARIGR------QHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWGIYLDGDAD----------LVTMKGN 11 PEL_LILLO/160-357 89.8% 17.1% WIDHVSLARC-----------------SDGLIDVILGSTAITISNCHLTEHDDVMLLGASDTYTQ-DEI---MQVTVAFN 12 PE59_LYCES/173-370 89.8% 18.5% WIDHVSMQRC-----------------YDGLIDAVEGSTGITISNGHFTDHNEVMLFGASDSSSI-DQV---MQITLAFN 13 PE56_LYCES/121-318 89.8% 21.8% WIDHISMSRA-----------------TDGLIDAVAGSTNITISNCHFTDHEKVMLFGANDHAEE-DRG---MKITLAYN 14 BAB40336/53-36 97.0% 15.0% WIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMA-DSGH--LRVTLHHN 15 MP11_AMBAR/122-318 89.3% 19.0% WIDHCSLSKS-----------------VDGLVDAKLGTTRLTVSNSLFTQHQFVLLFGAGDENIE-DRG---MLATVAFN 16 MP14_AMBAR/123-315 87.3% 18.1% WIDHCSLSKA-----------------VDGLIDAKHGSTHFTVSNCLFTQHQYLLLFWDFDERG--------MLCTVAFN 17 14041604/69-36 97.5% 16.9% WLDHNTFTDGEHPDSAAPTYFGMLYQQHDGQLDIVKGADYVTASWNVFTEHDKTILIGNSDSESTAAVDRGHLRATFHHN 18 MPA1_JUNAS/96-295 89.8% 19.6% WIDHNSLSDC-----------------SDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDD-DKS---MKVTVAFN 19 O08454/45-250 89.3% 23.8% WIDHNSFSNG-----------------YDGAVDVKRASDYVTVSWNKFSSHNKTMLLGHSDDNGSEDRGK--LRVTYHHN 20 Q9WYR4/55-279 91.4% 21.9% WIDHCTFVNG-----------------NDGAVDIKKYSNYITVSWCKFVDHDKVSLVGSSDKEDPEQAGQA-YKVTYHHN 21 Q9NDN2/53-282 90.9% 21.6% WIDHVTMRKH-----------------GDGLIDIVNGANYVTISNSRFEQHNKSITISGNDNDTNTDK----YKVTIQDC 22 Q40319/175-372 89.8% 18.5% WIDHISLSDC-----------------EDGLVDVIQGSTAVTISNCHMTKHNDVMLFGASDTYQD-DKI---MQITVAFN 23 O64510/175-372 89.8% 19.0% WIDHVSMTDC-----------------SDGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVI-DKK---MQITVAFN 24 Q43862/165-361 89.3% 20.8% WIDHVSMSSC-----------------SDGLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQ-DAV---MQVTVAFN 25 Q9LFP5/196-393 89.8% 18.1% WLDHISMSKC-----------------QDGLIDAIVGSTGITISNSHFTHHNDVMLLGAQNTNEA-DKH---MQVTVAYN 26 B53240/124-320 89.3% 18.5% WIDHCSLSKA-----------------SDGLLDITLGSSHVTVSNCKFTQHQFVLLLGADDTHYQ-DKG---MLATVAFN 27 E53240/123-319 89.3% 18.1% WIDHCTLSKS-----------------FDGLVDVNWGSTGVTISNCKFTHHEKAVLLGASDTHFQ-DLK---MHVTLAYN 28 9612_LYCES/128-325 89.8% 20.4% WVDHCSLSNC-----------------HDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSFTQ-DKG---MQVTVAFN 29 Q9LTZ0/135-332 89.8% 20.4% WIDHCSLSNC-----------------DDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQ-DKN---MQVTIAFN 30 O24416/175-372 89.8% 18.5% WVDHNSLSNC-----------------ADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYTR-DKQ---MQVTIAYN 31 Q9SCP2/128-325 89.8% 20.4% WIDHCSLSRC-----------------KDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEP-DSG---MQVTIAFN 32 Q9SV40/154-342 89.8% 21.3% WVDHCSMSHC-----------------TDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAP-DTG---MQVTIAFN 33 Q9FM66/123-314 89.8% 23.3% WIDHCTLEKC-----------------YDGLIDAVNGSTDITISNSYMLNHNEVMLLGHSDEYSG-DRD---MRVTIAFN 34 O65388/110-307 89.8% 20.4% WIDHCFFSRC-----------------QDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVE-DKI---MRVTIAFN 35 12322129/109-292 89.8% 22.8% WIDHCFLSRC-----------------HDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMG-DKD---MRVTIAFN 36 516728/96-295 89.8% 17.9% WIDHNSFSNS-----------------SDGLVDVTLTSTGVTISNNLFFNHHKVMLLGHDDAYSD-DKS---MKVTVAFN 37 Q9FY87/47-244 89.8% 18.1% WIDHNTLYDC-----------------EDGLLDVTLGSTDVTVSNNWFRNQDKVMLLGHDDGYVK-DKD---MRVTVVFN 38 Q9SF49/93-291 90.4% 22.4% WIDRCSLKNY-----------------YDGLIDITRESTDITVSRCHFMNHNKTMLIGADTSHVT-DRC---IRVTIHHC 39 Q9M3D5/45-254 90.4% 22.0% WIDRCSLRDY-----------------DDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVE-DRC---IRVTIHHC 40 Q9UUS4/38-296 92.9% 18.3% WVDHVTTARPGR------QHYVFGFNPSKRITLSNNFINGESTYSTGCNGYHYWTFEMVGKDD----------QITMKNN 41 510104/24-246 98.5% 61.1% WIDHCSFVG---------HSWSTTDGSEDKLLYIGEKADYATISNCFFGSHKYGLIFGHPADDNNAAFNGY-PRLTLCHN 42 O34819/58-279 98.0% 49.5% WIDHVTFSG---------HSYNASGSDLDKLVYIGKSADYITISNSKFANHKYGLILGYP-DDSQHQYDGY-PHMTIANN 43 S23573/95-302 93.9% 20.3% WIDHVTTARIGR------QHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSND----------MVTLKGN 44 Q9Y891/95-302 93.9% 20.8% WIDHVKTSLIGR------QHIVLGNGANNRVTISNNEIDGSTSWSATCDNHHYWGVYLTGSND----------MVTFKSN 45 E972045/83-296 88.3% 5.1% DHCETSLTGR------QHYVTGFHPNTRMTWSNNFLNGVTTHSAGCDDHHYWTMELVGPGD----------EITFQNNYV 46 CAC33162/52-26 89.3% 21.5% WIDHCDVSSDRDH----------DKDYYDGLIDITHGSDYVTVSNTFIHDHWKASLVGHSDSNED-EDSGH-LTVTYANN 47 Q9Y892/57-271 89.8% 24.5% WVDHSEFSSALVA----------DKDYYDGLVDASHGADYITISYTYFHDHWKTSLIGHSENNGA-EDSGH-LRVTYANN 48 Q9Y890/55-268 88.3% 25.7% WVDHCELYATREGV---------DKDFYDGLADLSHAADWVTISNVYFHDHSKGSLVGHSDSNAA-EDTGT-LRVTYANN 49 S51509/51-264 88.8% 23.4% WVDHCDLSGDLSG----------GLDDLDGLVDISHGAEWITVSNTYFHDHWKGSLIGHSDNNED-EDLGH-LHVTYANN 50 Q9WX56/62-282 90.9% 20.9% WVDHNELYNTLNS----------GKDDYDGLFDVKNDSDYITFSWNYVHDSWKTMLMGSSDND---NYNRK---ITFHNN 51 Q9NDN1/50-270 90.9% 18.5% WVDHNELYASLNV----------HKDHYDGLFDVKRDAYNITFSWNYVHDGWKAMLMGNSDSD---NYDRN---ITFHHN 52 Q9KGY5/68-292 92.9% 21.2% WIDHNELYSSLNV----------DQDYYDGLIDSKSGAENITISYNYIHDSWKTSLHGHSDDDSSSNKNRH---ITFHHN 53 Q9KGY6/68-280 90.4% 22.0% WVDHVTLEASGG-----------ESSGYDALFDMKNNTKYVTLSYSILRNSGRGGLVGSSDSD---DANGP---VTFHHN 54 Q04085/49-263 85.3% 10.0% WIDHNEIFAKNFEC----AGTKDGDTTFESAIDIKKASTNVTISYNYIHGIKKVGLSGLSQRQRD-DR------LTRYR- consensus/100% .hsc..h......................t...........p...s.........h..................hp.... consensus/90% WlDHsph.t...................cthh.h..tss.hThu.shhtth..h.lhhtssp............hTht.s consensus/80% WlDHsph.tt..................DuhhDhh.sushlTlS.shhppaphs.LhGtsss....t.......lTht.N consensus/70% WlDHsohsps..................DGllDhhpuushlTlSpshhppHpcshLhGtsDsp.t.ct....hplThthN cov pid 241 : . . . . 3 ] 305 1 PLYD_ERWCA/24-247 100.0% 100.0% YYEN-IQVRAPGLMRYGYFHVFNNYVNKFQ-------------LAFTVAQNANVISERNVFGSGA 2 Q9Z4J4/60-319 94.4% 17.6% VFDR-VTERTPRVRFG-SIHAYNNVYLGDVKNSVYPY-----LYSFGLGTSGSILSESNSFTLSN 3 PLYD_ASPNG/94-301 90.9% 19.3% YLYK-TSGRAPKVQDNTYLHIYNNYWENNSG------------HAFEIGSGGYVLAEGNYFSNVD 4 PELA_ERWCH/63-325 95.4% 17.1% VFNR-VTERAPRVRYG-SIHSFNNVFKGDAKDPVYRY-----QYSFGIGTSGSVLSEGNSFTIAN 5 PEL_BACSU/105-352 93.9% 16.3% RYKN-IVQRAPRVRFG-QVHVYNNYYEGSTSSSSYPF-----SYAWGIGKSSKIYAQNNVIDVPG 6 PEL_PSEFL/55-317 93.4% 17.3% LFEN-ISARAPRVRFG-QVHLYNNYHVGSTSHKVYPF-----SYAHGMGKNSKIFSERNAFEISG 7 PEL_PSESL/54-316 93.4% 16.5% LFEN-ISSRGPRVRVG-QVHLYNNHHIGSTTHKVYPC-----VYAQGVGKGSKIFSERNVLDISG 8 PELC_ERWCH/50-285 91.9% 17.3% YYND-VNARLPLQRGG-LVHAYNNLYTNITG------------SGLNVRQNGQALIENNWFEKAI 9 551238/49-284 91.9% 17.7% IYSD-VNSRLPLQRGG-QVHAYNNLYGGIKS------------SGFNVRQKGIALIESNWFENAL 10 PLYA_ASPNG/95-302 91.4% 17.9% YIYH-TSGRSPKVQDNTLLHCVNNYFYDISG------------HAFEIGEGGYVLAEGNVFQNVD 11 PEL_LILLO/160-357 89.8% 17.1% HFGRGLVQRMPRCRYG-FVHVVNNDYTHWI------------MYAVGGSQHPTIISQGNRYIAPH 12 PE59_LYCES/173-370 89.8% 18.5% HFGKRLIQRMPRCRWG-YIHVVNNDYTHWN------------MYAIGGSMHPTIIHQGNRFIAPP 13 PE56_LYCES/121-318 89.8% 21.8% HFGKRLDQRMPRCRFG-FFHLVNNDYTHWE------------RYAIGGSSGATIISQGNRFIAED 14 BAB40336/53-36 97.0% 15.0% YYKN-VTQRLPRVRFG-QVHIYNNYYEFSNLADYDF------QYAWGVGVFSQIYAQNNYFSFDW 15 MP11_AMBAR/122-318 89.3% 19.0% TFTDNVDQRMPRCRHG-FFQVVNNNYDKWG------------SYAIGGSASPTILSQGNRFCAPD 16 MP14_AMBAR/123-315 87.3% 18.1% KFTDNVDQRMPNLRHG-FVQVVNNNYERWG------------SYALGGSAGPTILSQGNRFLASD 17 14041604/69-36 97.5% 16.9% LFKN-LVERAPRVRFG-QVDVYNNHFVASDDY----------AYSFGVGKESALVAEHNAFTLPA 18 MPA1_JUNAS/96-295 89.8% 19.6% QFGPNAGQRMPRARYG-LVHVANNNYDPWN------------IYAIGGSSNPTILSEGNSFTAPS 19 O08454/45-250 89.3% 23.8% WFDG-TQQRHPRVRFGNPVHVYNNYYGGVT------------SYGVASTMEAGVLVEGNYFENTG 20 Q9WYR4/55-279 91.4% 21.9% YFKN-CIQRMPRIRFG-MAHVFNNFYS-MGLRTGVSGNVFPI-YGVASAMGAKVHVEGNYFMGYG 21 Q9NDN2/53-282 90.9% 21.6% WFRG-TTQRNPRVRFG-MVHLYNNYYSDMGKYGRDMGYSSSLGYAIGVGVSAKIYSENNYFENLR 22 Q40319/175-372 89.8% 18.5% HFGQGLIQRMPRCRWG-FFHVLNNDYTHWI------------MYAIGGSSAPTILSQGNRFIAPH 23 O64510/175-372 89.8% 19.0% HFGKRLKQRMPRVRFG-LVHVVNNDYTHWE------------MYAIGGNMNPTIISQGNRFIAPP 24 Q43862/165-361 89.3% 20.8% HFGRGLVQRMPRCRYG-FFHVVNNDYTHWI------------MYAIGGNMNPTIISQGNRFIAPD 25 Q9LFP5/196-393 89.8% 18.1% HFGKGLVQRMPRIRWG-FVHVVNNDYTHWE------------LYAIGGSQGPTILSHGNRFIAPP 26 B53240/124-320 89.3% 18.5% MFTDHVDQRMPRCRFG-FFQVVNNNYDRWG------------TYAIGGSSAPTILSQGNRFFAPD 27 E53240/123-319 89.3% 18.1% IFTNTVHERMPRCRFG-FFQIVNNFYDRWD------------KYAIGGSSNPTILSQGNKFVAPD 28 9612_LYCES/128-325 89.8% 20.4% HFGEGLVQRMPRCRHG-YFHVVNNDYTHWE------------MYAIGGSAAPTINSQGNRFLAPN 29 Q9LTZ0/135-332 89.8% 20.4% HFGEGLVQRMPRCRHG-YFHVVNNDYTHWE------------MYAIGGSASPTIYSQGNRFLAPN 30 O24416/175-372 89.8% 18.5% HFGEGLIQRMPRCRHG-YFHVVNNDYTHWE------------MYAIGGSADPTINSQGNRYLAPN 31 Q9SCP2/128-325 89.8% 20.4% HFGEKLIQRMPRCRRG-YIHVVNNDFTQWE------------MYAIGGSGNPTINSQGNRYTAPT 32 Q9SV40/154-342 89.8% 21.3% HFGQGLVQRMPRCRRG-YIHVVNNDFTEWK------------MYAIGGSGNPTINSQGNRYSAPS 33 Q9FM66/123-314 89.8% 23.3% YFGEGLVQRMPRCRHG-YFHIVNNIYRDWK------------MYAIGGSANPTIFSQGNVFIASN 34 O65388/110-307 89.8% 20.4% HFGPGLIERMPRVRRG-YAHVANNRYEKWQ------------MYAIGGSADPTIFSEGNYFVASD 35 12322129/109-292 89.8% 22.8% TFGPGLIERMPRVRRG-YAHVANNRYEKWQ------------MYAIGGSANPIIFSEGNYFVAPE 36 516728/96-295 89.8% 17.9% QFGPNCGQRMPRARYG-LVHVANNNYDPWT------------IYAIGGSSNPTILSEGNSFTAPN 37 Q9FY87/47-244 89.8% 18.1% HFGPNCNQRMPRVRHG-YAHVANNYYQGWT------------QYAIGGSMSPRVKSESNYFVAPK 38 Q9SF49/93-291 90.4% 22.4% FFDG-TRQRHPRVRFA-KVHLFNNYTRHWA------------IYAVGAGVESQIHSQCNIYEAGE 39 Q9M3D5/45-254 90.4% 22.0% FFDG-TRQRQPRLRFG-KVHLYNNYTRNWG------------IYAVCASVEAQVFSQCNIYEAGV 40 Q9UUS4/38-296 92.9% 18.3% YIYK-TTGRGPALSGGTLLHAVNNVWEDING------------HALEGGDANARGIEGNAFIKVS 41 510104/24-246 98.5% 61.1% RFDN-MEVRAPGLMRYGYFHVYNNYINKFH-------------LGFTLAQNANILSESNYFGEGS 42 O34819/58-279 98.0% 49.5% YFEN-LYVRGPGLMRYGYFHVKNNYSNNFN-------------QAITIATKAKIYSEYNYFGKGS 43 S23573/95-302 93.9% 20.3% YFYN-LSGRMPKVQGNTLLHAVNNLFHNFDG------------HAFEIGTGGYVLAEGNVFQDVN 44 Q9Y891/95-302 93.9% 20.8% YIHH-TSGRAPKIAGNSLVHVVNNYFYDNTG------------HAMEADAGAQVVLEGNIFQNVK 45 E972045/83-296 88.3% 5.1% YH-TTGRGPALSGTTLFHAVNSVWSSIPG------------HAIEGGDKGRGLFEGCFFEDVVEI 46 CAC33162/52-26 89.3% 21.5% YWYN-VNSRAPSFRFG-TGHVYNSYYLDVS-------------DGINTRDGAQLLVESNQFVDSK 47 Q9Y892/57-271 89.8% 24.5% YWAN-FGSRGPSVRFG-TAHIYNSYYLNAN-------------SAINTRQNAQVLVQSNVFKNVT 48 Q9Y890/55-268 88.3% 25.7% HWYN-IRSRGPLLRFG-TAHVYNNYVNG-MD------------TGLNSRMGAQALIQSSLFENTG 49 S51509/51-264 88.8% 23.4% YWYN-VYSRTPLIRFA-TVHIINNYWDSLID------------TGVNCRMDAQVLIQSSAFHNCP 50 Q9WX56/62-282 90.9% 20.9% RFEN-LNSRVPSMRFG-EGHVYNNYYKGILT------------TAINSRMGAKMRIEHNVFENTN 51 Q9NDN1/50-270 90.9% 18.5% YFKN-LNSRVPAYRFG-KAHLFSNYFENILE------------TGINSRMGAEMLVEHNVFENAT 52 Q9KGY5/68-292 92.9% 21.2% RFEN-IISRVPLFRFG-QGHIFNNYYNNITS------------SAINSRMGAELHIENNYFEHTK 53 Q9KGY6/68-280 90.4% 22.0% YYQN-INSRTPLLRHA-TAHAYNNYYSGIQS------------SGMNPRIGGKIRAENNYFQDSK 54 Q04085/49-263 85.3% 10.0% ------FFASPDQRSR---------------------------CGFCARRHSSSRRAGRALPSLR consensus/100% ............................................t.t.t..s....t........ consensus/90% ha...h.tRhP.hphs..hphhNN.h..................uhs.t.ts.hh.ptN.a..s. consensus/80% hatp.h.tRhPthRhu..hHlhNN.att.t.............huhsst.tsplhspsNhF.tst consensus/70% hFtp.l.pRhPchRhG.hhHlhNN.aptht.............aAhssutssplhupuNhF.sss