cov pid 1 [ . . . . : . . . 80 1 Q9VXN9/175-339 100.0% 100.0% SAIIPRSSWLA-QKPMDEPL-PLQLPVKYVVILHTATES--SEKRAINVRLIRDMQCFHIESRGWNDIAYNFLVGCDGNI 2 O76537/18-181 99.3% 36.1% CGVVTKDEWD--GLTPIHVE-YLARPVELVIIQHTVTST--CNTDAACAQIVRNIQSYHMDNLNYWDIGSSFIIGGNGKV 3 Q9VSW0/25-189 100.0% 41.0% LHILDRSEWLG-EPPSGKYP-HLKLPVSNIIIHHTATEG--CEQEDVCIYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQI 4 Q9VYX7/38-201 99.3% 41.7% PTIKLKRQWG--GKPSLGLH-YQVRPIRYVVIHHTVTGE--CSGLLKCAEILQNMQAYHQNELDFNDISYNFLIGNDGIV 5 O75594/31-195 99.3% 40.0% SPIVPRNEWK--ALASECAQ-HLSLPLRYVVVSHTAGSS--CNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLV 6 Q9VV97/25-189 99.3% 35.2% LQIEPRSSWG--AVSARSPS-RISGAVDYVIIHHSDNPNG-CSTSEQCKRMIKNIQSDHKGRRNFSDIGYNFIVAGDGKV 7 O97369/22-185 99.3% 35.4% PGVVTRDVWD--ALSPLHTK-YVTRPVNIVIIMHTVSTQ--CTTDEACEIRMQSLQNYHMEDVGNWDIGSSFYVGSNKKI 8 Q9V3B7/22-185 99.3% 34.7% VYVVSKAEWG--GRGAKWTV-GLGNYLSYAIIHHTAGSY--CETRAQCNAVLQSVQNYHMDSLGWPDIGYNFLIGGDGNV 9 Q9VGN3/13-177 99.3% 38.6% ARLLSRSDWG--ARLPKSVE-HFQGPAPYVIIHHSYMPA-VCYSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIGGDGMI 10 Q9QXZ2/360-526 100.0% 39.0% PAIHPRCRWGA-APYRGHPT-PLRLPLGFLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQDVRKWDDIGYSFVVGSDGYL 11 Q9VV96/17-180 98.6% 36.6% GQIVPRSSWCPVPISPRMP--RLMVPVRLIIIHHTVTAP--CFNPHQCQLVLRQIRADH-MRRKFRDIGYNFLIGGDGRI 12 Q9VS97/20-184 100.0% 30.6% VPIVTRAEWNA-KPPNGAID-SMETPLPRAVIAHTAGGA--CADDVTCSQHMQNLQNFQMSKQKFSDIGYHYLIGGNGKV 13 O86334/196-366 100.0% 26.2% PAIISRAEWGADESLRCETP-EYDRGVRAAVVHHTAGSN--DYSPLESAGIVKAIYTYHSKTLGWCDIAYNALVDKYGQV 14 AAG23729/112-27 97.2% 29.3% HLVVDREQWGASKNSHGLTI-PLKRPIPYVLITHIGVQSLPCDNIYKCSIKMRTIQDSAIAEKGLPDIQSNFYVSEEGNI 15 Q9KZK5/221-390 100.0% 30.2% PSITTRRGWGADEKLREKGF-VYTKKVKTAFVHHSATGN--NYRCSQAPSVIRGIYRYHVHSLGWRDLGYNFLVDKCGHI 16 Q9S2P9/110-281 100.0% 24.7% PDIVPRSVWLGDAARAQPAP-RYDDEVVAVFVHHTDTPN--GYDCADVPAILRGVYQGQTGARDWDDIGYNFVVDRCGTV 17 Q9VRP7/347-500 94.4% 17.7% LSIVGHGIWS-DMELQGRGTLFDPIGVGTVIFTHTGSNE--CHDD--CPDVLHKLERSHVG-----ELPYNFLVAGDCQV 18 AAF99599/206-36 98.6% 35.4% APALSHGLCG---EPGRPLS-RMTLPAKYGIIIHTAGRT--CNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAI 19 15695/1-145 86.1% 17.7% ---MAKVQFK----PRATT---------EAIFVHCSATK--PSQ----NVGVREIRQWHKEQ-GWLDVGYHFIIKRDGTV 20 AAF99599/49-201 99.3% 34.7% STTVSRKAWGA-EAVGCSI--QLTTPVNVLVIHHVPGLE--CHDQTVCSQRLRELQAHHVHNNSGCDVAYNFLVGDDGRV 21 Q9VSV9/317-465 99.3% 35.2% LVILKVAEWG--GRPAKRMLDAQQLPINRVVISHTAAEG--CESRDSCSYWTRVTQSRHMDTFNWSQVGYNFLVGGDGRI consensus/100% .....h..h....................hhh.H.......s.........hp.h.t.........pl..phhltt.t.l consensus/90% ..hhs+t.W.................h.hhhl.Hsss.t..s.p...s...hpth.t.p.tt.t..Dlu.sFhlstsG.l consensus/80% ..lhs+stWt..t...t.h...hthsl.hslltHoss.t..s.p...s..hh+shpphH.tphth.DluYsFllutsGtl consensus/70% s.lls+spWs..t.sttts...hphslthlllpHTssss..Cps..tCt.hh+slQsaHhpphsasDIGYNFllut-Gpl cov pid 81 . 1 . . . . : ] 155 1 Q9VXN9/175-339 100.0% 100.0% YEGRGW----KTVGAHTL--GYNRISLGISFIGCFMKELPT-ADALNMCRNLLARGVEDGHISTDYRLICHCQCN 2 O76537/18-181 99.3% 36.1% YEGAGW----LHVGAHTY--GYNRKSIGITFIGNYNNDKPT-QKSLDALRALLRCGVERGHLTANYHIVGHRQLI 3 Q9VSW0/25-189 100.0% 41.0% YVGRGW----HIQGQHVN--GYGAISVSIAFIGTFVNMEPP-ARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLS 4 Q9VYX7/38-201 99.3% 41.7% YEGTGW----GLRGAHTY--GYNAIGTGIAFIGNFVDKLPS-DAALQAAKDLLACGVQQGELSEDYALIAGSQVI 5 O75594/31-195 99.3% 40.0% YEGRGW----NFTGAHSG-HLWNPMSIGISFMGNYMDRVPT-PQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQ 6 Q9VV97/25-189 99.3% 35.2% YEGRGF----GLQGSHSP--NYNRKSIGIVFIGNFERSAPS-AQMLQNAKDLIELAKQRGYLKDNYTLFGHRQTK 7 O97369/22-185 99.3% 35.4% YEGVGW----LRSGSHTY--GYNDKSIGINFIGNYNKDVPT-DDQLNAVRDLLKCGVEQGHLTQDFHVVGQRQLM 8 Q9V3B7/22-185 99.3% 34.7% YEGRGW----NNMGAHAA--EWNPYSIGISFLGNYNWDTLE-PNMISAAQQLLNDAVNRGQLSSGYILYGHRQVS 9 Q9VGN3/13-177 99.3% 38.6% YTGRGF----NVIGAHAP--KYNDKSVGIVLIGDWRTELPP-KQMLDAAKNLIAFGVFKGYIDPAYKLLGHRQVR 10 Q9QXZ2/360-526 100.0% 39.0% YQGRGW----HWVGAHTR--GYNSRGFGVAFVGNYTGSLPN-EAALNTVRDALPSAIRAGLLRPDYKLLGHRQLV 11 Q9VV96/17-180 98.6% 36.6% YEGLGF----GIRGEHAP--RYNSQSIGIAFIGNFQTGLPP-SQMLQAARTLIQIAVQRRQVSPNYSVVGHCQTK 12 Q9VS97/20-184 100.0% 30.6% YEGRSP----SQRGAFAG--PNNDGSLGIAFIGNFEERAPN-KEALDAAKELLEQAVKQAQLVEGYKLLGHRQVS 13 O86334/196-366 100.0% 26.2% FEGSAGGLTKPVEGFHTG--GFNRNTWGVAMIGNFDDVAPT-PIQIRTVGRLLGWRLGMDDVDPRSMVDLQSAGS 14 AAG23729/112-27 97.2% 29.3% YVGRGW----DWANTYAN------QTLAITFMGDYGRFKPG-PKQLEGVQFLLAHAVANRNIDVDYKLVAQNQTK 15 Q9KZK5/221-390 100.0% 30.2% YEGRAGGVSKPVLGAHTL--GFNSNSMGIAVLGTYSSKKPS-SAALKAIARLTAWKVGLYGMNPRGKTYLKSGGG 16 Q9S2P9/110-281 100.0% 24.7% YEGRAGGIDRPVTGAHTQ--GFNHRTTGIAALGTYTAGVPVPDELTDAIAAVAAWKLGETGTDPRAKVALVSSNG 17 Q9VRP7/347-500 94.4% 17.7% FEAQGW----HYRSQYPR-DLNGIDSLVMAFVGNFSGRPPI-DCQLMAAQALILESLKRRILQPIYQLFVLGSYT 18 AAF99599/206-36 98.6% 35.4% YEGVGW----NVQGSSTP--GYDDIALGITFMGTFTGIPPN-AAALEAAQDLIQCAMVKGYLTPNYLLVGHSDVA 19 15695/1-145 86.1% 17.7% EAGRDE----LAVGSHAK--GYNHNSIGVCLVGGIDDKGKF-DANFTPAQMQSLRSLLVT-LLAKYEGSVLRAHH 20 AAF99599/49-201 99.3% 34.7% YEGVGW----NIQGVHTQ--GYNNISLGFAFFGTKKGHSPS-PAALSAMENLITYAVQKGHLSSSYVQPLLGKGE 21 Q9VSV9/317-465 99.3% 35.2% YEGRGW----NYMGDHTR--DNNNNSIGITFLGTFRRQEPT-PKSLEAYLDNIGGGLILRFVERQQWLAQPPQKE consensus/100% ..u.s........s..s........shshshhGsh..........h..h......th....h..........t.. consensus/90% atGhuh.....h.Gtas.....s..shulshhGsa.t..P...t.lpshtthh..tl..t.lp.th.h.h.tth. consensus/80% YpGtuh.....h.GsHs...taNt.ohGlshlGsattt.Ps.st.lpshptLlt.ult.t.lpspahlhhhppht consensus/70% YEGpGa....thhGsHs...saNp.SlGIsFlGsappphPs.sttLpAsppLlthultps.lpssYtlhspppht