cov pid 1 [ . . . . : . . . 80 1 7159.AAEL003004-PA_from_325_to_412 100.0% 100.0% SMFVGMLITRLVAPNEL-------INMSCTGHASLRFARLKKPDGSPMYPPTEKIDPRIFDFVCNKVAERT--------- 2 7159.AAEL003984-PA_from_309_to_396 92.0% 13.7% YLFVKSIMEDLWPDGFAGRSVTGRASNNASGRSGKATLPTAPPEQSPKVP----LEAHKVEYIRDRLLERR--------- 3 7159.AAEL003016-PA_from_328_to_415 88.6% 12.2% GKFISALADQLWTRDQL-------AARSVRGKQC-YRH--PESST--HIP----ASPTKVSFIHDKLMQRI--------- 4 31033.SINFRUP00000129720_from_307_to_382 86.4% 21.6% SKFTKNLAVMIWGTETL-------KNRSVTGVATK-----KKKDALPKPP----LSPSKLKIVRECLYDRV--------- 5 7159.AAEL003998-PA_from_388_to_464 85.2% 17.0% LRFVSKLALALWGHERL-------AVSSVTGRKSNNAS--NNSTP--SIQ----LEPEKLSFIKEKVYHRA--------- 6 7159.AAEL002989-PA_from_261_to_356 89.8% 14.3% RLFISKLAVAVFGVDVL-------VNSSVTGKPSNAH---HNIPP--KPP----LCPEKIAAIEAKLYERVEQEVGR--- 7 9913.ENSBTAP00000010825_from_190_to_271 88.6% 10.9% QKFINDLMQVLYTNEYM-------ATHSLTGAKSS-----TSRDKAVKPA----MNQNEVQEIIGITKQLF--------- 8 8364.ENSXETP00000007576_from_211_to_286 79.5% 8.6% HRFAELLFQHHVPHSL--------YQLWANK-VNV------DGSRG--KVA----LPRNLVMDIMHQTSKRF-------- 9 7955.ENSDARP00000002457_from_1115_to_1191 80.7% 7.5% DRYGCLLFRVIVPQTK--------YKEWASN-TNW------DGSRG--KCA----LPVNLRSFIIDTVSQRF-------- 10 99883.GSTENP00013760001_from_246_to_322 80.7% 10.8% DRYASYVFRYLVPYNK--------YCEWVTK-VNY------NGLMG--KEA----LPTNVRRAMRLYIERRF-------- 11 31033.SINFRUP00000179515_from_221_to_300 85.2% 12.9% TAMARTLLMGVFDMNTL-------MNSNLRGGRSR-----RPAFQPQRSA----LDPHKINAI---FNSST--------- 12 69293.ENSGACP00000016868_from_144_to_219 80.7% 5.4% GELGCRLLVHLFPELFK-------ARDCSHE---------CMAS---KRT----LESLHLQLIRNYVEVCY--------- 13 9913.ENSBTAP00000016639_from_264_to_343 85.2% 6.5% GDLACRLLVQLFPELFS-------DVDFSRGCGA------CGFAA--KRK----LESLHLQLIRNYVEVYY--------- 14 8364.ENSXETP00000041739_from_185_to_264 85.2% 4.3% GDLACRLLVQLFPELFG-------SDGYSRNCST------CGYIN--KTK----LESLHLQLIRNYVEVCY--------- 15 10090.ENSMUSP00000047251_from_734_to_813 85.2% 8.6% GNFAARLLVRLFPELFT-------TENLRLQYNH------SGACN--KKQ----LDPTRLRLIRHYVEAVY--------- 16 8364.ENSXETP00000041739_from_489_to_568 85.2% 10.8% GNFASRLLVHLFPELFT-------HENLRKQYNC------SGSLG--KKQ----LDPVRVKLIRHYVQILY--------- 17 69293.ENSGACP00000016868_from_283_to_361 85.2% 10.9% EDFVVFLMHRLFPEVFE-------EGKMPEGSGR------FSSVG--QLI----LDSDKMEIIRKYMEANF--------- 18 8364.ENSXETP00000041739_from_329_to_406 83.0% 7.5% GEFAVFLLHRLFSEIFD-------QRKLADH--C------ARETE--NFV----LDPHRLQLIRRYTEIYF--------- 19 10141.ENSCPOP00000000925_from_328_to_407 85.2% 10.8% GEFAVFLLHRLFPELFD-------HRKLGEQYSC------YGDGG--KQE----LDPQRLQIIRNYTEIYF--------- 20 9031.ENSGALP00000024672_from_252_to_330 84.1% 8.6% GEFCVFLLHRLFPELFD-------HRKLAERYSC------YGDSG--KQL----LDPHRLQIIRRYTEIYF--------- 21 10090.ENSMUSP00000052458_from_311_to_395 86.4% 14.4% SLLFRKLVCAFFDDKTL-------ANSLPNGKRKRGFN--DNRKG---------LDQNIVGAIKVFTENYC--------- 22 7227.CG9883-PA_from_287_to_365 89.8% 19.3% PVATRCLLCVVFSSDEL-------ATHTLTGKPSPAF---YGRERPPKLQ----LDQRKVDDIVVCVRNRT--------- 23 7165.AGAP009151-PA_from_430_to_509 90.9% 10.2% KFGTRKLLQMLFTRETL-------ASCSLSGRPCPARINEVDRPV--KGA----LPPKVVADIVEYVMKKC--------- 24 7227.CG12205-PA_from_276_to_354 89.8% 11.4% PSITRKLLCEIFDRDTL-------AHHTLSGKPSPAF-RDCARPS--KQQ----LDPLKVADLVYLMTNSL--------- 25 7227.CG3227-PA_from_278_to_356 89.8% 13.6% SLATRKLLVTIFDRETL-------ATHSMTGKPSPAF-KDQDKPL--KRM----LDPGKIQDIIFAVTHKC--------- 26 7159.AAEL001891-PA_from_519_to_598 90.9% 14.8% KAATRKLLMTLFSREVL-------ASHTLTGRPSPAFMGDRAKPV--KDK----LDQKIIADIISIVAKTC--------- 27 31033.SINFRUP00000142237_from_243_to_325 90.9% 9.9% RRLLRYLIRYVFTTDEL-------KFSCGLGKRKRSVH--SGDSGLERRP----LNPVKVSCLREFIRMHC--------- 28 10090.ENSMUSP00000026354_from_257_to_330 80.7% 11.0% EKMALTLLDYLFHREVQ-------AVSNLSG---------QGKHG--KKQ----LDPLTIYGIRCHLFYKF--------- 29 9685.ENSFCAP00000011173_from_250_to_338 83.0% 8.7% EKMALTLLDYLFHREVQ-------AVSNLSG---------QGKHG--KKQ----LDPLTIYGIRCHLFYKFGITESTVMS 30 59463.ENSMLUP00000003584_from_381_to_459 86.4% 14.3% KVLLRRLLASFFDRNTL-------ANSCGTGIRSS-----TNDPR--RKP----LDSRVLHAVKYYCQIFA--------- 31 8364.ENSXETP00000012324_from_367_to_441 85.2% 14.8% V-SHSSLLLVFVFRNTL-------ANSCGTGIRSS-----TNDPS--RKP----LDSRVLHAVKFYCQNFA--------- 32 8364.ENSXETP00000057096_from_370_to_446 87.5% 6.8% KLMTRRLLDYFFSRETL-------ARSSATGQRIAH----NNTTMEKPLR----LPDKVVTAIKAYVTRAC--------- 33 7955.ENSDARP00000076399_from_137_to_215 81.8% 12.6% SAAVRYLLRNIFTTKEL-------SQSSTTG---------NPSRC--LLR----LDTNKVDAIREWAVKRY--------- 34 7955.ENSDARP00000076399_from_313_to_391 81.8% 10.5% ELVARYLIRFIFPEDVL-------VNSNVYG---------GVRRG--IHA----LDHNKISALREHLSERF--------- 35 59463.ENSMLUP00000009379_from_629_to_707 81.8% 7.4% QMSASYLLGQIFTEEVL-------LNSTIYG---------NLWHG--VCA----LNYNMISALREFLRDNY--------- 36 9606.ENSP00000369372_from_687_to_765 81.8% 12.6% SLSARYLIQKLFTKDVL-------VQSNVYG---------NLKHG--LCA----LDPNKISALREFLQENY--------- 37 9365.ENSEEUP00000009235_from_532_to_609 80.7% 11.6% ELSARYLIRQLFTVEVL-------IKSNVYG---------NQRLG--IYA----LNASKIHALREFLQDAF--------- 38 9913.ENSBTAP00000041696_from_522_to_599 80.7% 11.6% DLSARYLILSLFTEEVL-------INS-VHG---------STEFG--VYS----LNANKINALREFLQEIY--------- 39 30611.ENSOGAP00000011395_from_620_to_698 81.8% 8.4% ELAARYLLRNLFTEDVL-------IRSTVYG---------DLGHG--MSA----LNTNRINALREFLQDNF--------- 40 9785.ENSLAFP00000009862_from_509_to_587 81.8% 10.5% ELSARYLIRNLFTDEVL-------MKSNVYG---------HPGHG--IYA----LNYNKIAALREFLQDNF--------- 41 37347.ENSTBEP00000004143_from_620_to_698 81.8% 7.4% ELSARYLVRSLFTEDVL-------IRSNVYG---------NPRRG--IRA----LNTNKIQALREFLQGAY--------- 42 42254.ENSSARP00000011780_from_633_to_711 81.8% 12.6% ELSARYLIRRLFSDEVL-------IRSNVYG---------HVTLG--INP----LNANKIGALREFLQEAF--------- 43 9615.ENSCAFP00000018818_from_506_to_584 81.8% 11.6% ELAARYLIRNLFPEKVL-------VKSNVYG---------NLGHG--MRA----LNPNRISALREFLQDIF--------- 44 9258.ENSOANP00000006140_from_369_to_447 81.8% 11.6% ELSARYLIRHLFTEEVL-------VKSNVYG---------NLERG--MCP----LDCNRINALRDFLQENY--------- 45 43179.ENSSTOP00000001714_from_668_to_746 81.8% 11.6% ELSARYLIRNLFTEEVL-------IRSNVYG---------SVGRG--MCA----LNPNRINALREFLQDNY--------- 46 42254.ENSSARP00000011780_from_463_to_540 78.4% 8.4% EHAICYLVGIVFSNEIM-------AYSS------------SETKN--NQP----LDSNKVAAIREYVATVF--------- 47 9913.ENSBTAP00000041696_from_341_to_418 80.7% 10.5% RHAACYLVRILFSKEIL-------TSTSVG----------ISSQG--CQS----LDPNKIAAIREHLAAVF--------- 48 9598.ENSPTRP00000037193_from_436_to_515 80.7% 9.5% KQAACYLVRILFSKEIL-------ISSSVD----------IHLKD--SQS----LDPNKMAALREYLATTF--------- 49 9986.ENSOCUP00000011730_from_398_to_475 80.7% 11.6% SPKAAYLVRNLFPKETL-------IGSSVS----------ANCRD--RPR----LDPNKMAAVREFLATVF--------- 50 9258.ENSOANP00000006140_from_196_to_273 80.7% 9.5% KYAARYLVRVLFPKETL-------LCSVMG----------VSARG--RRT----LDPNKVAAIREFLATFF--------- 51 9031.ENSGALP00000026641_from_211_to_288 80.7% 9.5% KYAARYLVRVLFPKEAL-------LCSVIG----------VSTQG--WCS----LDPNKMNAIREFLAANF--------- 52 9365.ENSEEUP00000009235_from_352_to_429 80.7% 9.5% EHAACYLVRNMFSKEIL-------IRSSVG----------NNSEG--LQP----LDPNKVAAIREFLEDNF--------- 53 30611.ENSOGAP00000011395_from_434_to_511 80.7% 13.7% EHAACYLVRVLFSKEVL-------INSSVG----------VNVQG--RQP----LDPNKLAAIREYLAVVF--------- 54 37347.ENSTBEP00000004143_from_441_to_518 80.7% 10.5% QLAARYLVCVLFSKEVL-------MRSSVD----------VNSQG--RPP----LDPNILAALREYLAMIF--------- 55 9685.ENSFCAP00000005983_from_334_to_411 80.7% 9.5% RHAVRYLIHILFSKKIL-------TDGWVG----------VNSQG--LRP----LDANKMAALREHLQSVF--------- 56 9615.ENSCAFP00000018818_from_321_to_400 80.7% 9.5% RHAARYLVPILFSKEIL-------MHGWVG----------VNSQG--RQP----LDPNKMAAIREYLATIF--------- consensus/100% ...h..lh..hh...............................................h..........h......... consensus/90% t..h.hLh..hasp.h........h.p...........................lp..hht.lh.hh...h......... consensus/80% t.hsphLlh.lFspphh.......hpp.h.t...........t.t..h......Lsspplthlcthht..h......... consensus/70% phhsphLlt.lFscphh.......hpssstt..........stts..h......Lssp+lttl+paltthh......... cov pid 81 . 1 . ] 118 1 7159.AAEL003004-PA_from_325_to_412 100.0% 100.0% --AMRIGLDD-----------IHTIRKNSDERIIKRY- 2 7159.AAEL003984-PA_from_309_to_396 92.0% 13.7% ----ILLGDD-----------RIKAIHE-CKQANKLM- 3 7159.AAEL003016-PA_from_328_to_415 88.6% 12.2% ---NLEEREDDDPRRKLQSR-VSHKLNEKFKNARRLK- 4 31033.SINFRUP00000129720_from_307_to_382 86.4% 21.6% ----SQETAD------------SAEITQRLSKVNKYI- 5 7159.AAEL003998-PA_from_388_to_464 85.2% 17.0% -------MQE-----------TNDRVQAMARFDDSRI- 6 7159.AAEL002989-PA_from_261_to_356 89.8% 14.3% --SNRAELLQRSGEKVVRLVVCQKSVNLRKQVQKRSL- 7 9913.ENSBTAP00000010825_from_190_to_271 88.6% 10.9% ---PSTDDAS-----IRRM--IGQKLNNCTKKPNLSK- 8 8364.ENSXETP00000007576_from_211_to_286 79.5% 8.6% -----VLGPKE------KQK--IIARLNFMLRTRHGS- 9 7955.ENSDARP00000002457_from_1115_to_1191 80.7% 7.5% ----PGLSDVD------RKC--IKDRINEFLRSPRNT- 10 99883.GSTENP00013760001_from_246_to_322 80.7% 10.8% ----PTLSCDH------WRE--IRDAINEILRVKRKP- 11 31033.SINFRUP00000179515_from_221_to_300 85.2% 12.9% ---CSSDLGP--SERLF----ILPFLDAILARFPLAK- 12 69293.ENSGACP00000016868_from_144_to_219 80.7% 5.4% ---PLVKNSS-----VWQEE-CLLQINDLFNRFWAQR- 13 9913.ENSBTAP00000016639_from_264_to_343 85.2% 6.5% ---PSVKDTA-----VWQAE-CLPQLNDFFSRFWAQR- 14 8364.ENSXETP00000041739_from_185_to_264 85.2% 4.3% ---PSVKNTG-----IWQVE-CLPQLNDFFNQFWAQR- 15 10090.ENSMUSP00000047251_from_734_to_813 85.2% 8.6% ---PVEKMEE-----VWHYE-CIPSIDERCRRPNRKK- 16 8364.ENSXETP00000041739_from_489_to_568 85.2% 10.8% ---PRAKNDR-----VWTLE-FVGKLDERCRRRDTEQ- 17 69293.ENSGACP00000016868_from_283_to_361 85.2% 10.9% ---PDVPEDS------WLQV-CIQHMEDALEGPHSNG- 18 8364.ENSXETP00000041739_from_329_to_406 83.0% 7.5% ---PDVQEEE-----VWLQQ-CVQRINDELESVLIDG- 19 10141.ENSCPOP00000000925_from_328_to_407 85.2% 10.8% ---PDMQEED-----AWLQQ-CVQRLNDELEGLGLEA- 20 9031.ENSGALP00000024672_from_252_to_330 84.1% 8.6% ---PDVQEEE-----AWLQQ-CVQRINEELENVY-MD- 21 10090.ENSMUSP00000052458_from_311_to_395 86.4% 14.4% ---TANHVDKLPGPRDWVQ--ILQDQIKLARRRLKRG- 22 7227.CG9883-PA_from_287_to_365 89.8% 19.3% ----GGKERV-----------IRATITTKCADTAKKY- 23 7165.AGAP009151-PA_from_430_to_509 90.9% 10.2% ----NVEECH-----------VRGVITNKCADENKML- 24 7227.CG12205-PA_from_276_to_354 89.8% 11.4% ----DMTPRE-----------VRTAITTKCADENKML- 25 7227.CG3227-PA_from_278_to_356 89.8% 13.6% ----NASEKE-----------VRNAITTKCADENKMM- 26 7159.AAEL001891-PA_from_519_to_598 90.9% 14.8% ----SVSEPM-----------VRTAITTKCADENKMS- 27 31033.SINFRUP00000142237_from_243_to_325 90.9% 9.9% ----ASNPDW------WMP--SEEQINKVFSDAVGHA- 28 10090.ENSMUSP00000026354_from_257_to_330 80.7% 11.0% ----GITESD------WYR--IKQSIDSKCRTAWRRK- 29 9685.ENSFCAP00000011173_from_250_to_338 83.0% 8.7% TPPPASEMPQPPPQA------LHYALANAQQVQIHQI- 30 59463.ENSMLUP00000003584_from_381_to_459 86.4% 14.3% ---PNFKERE--TNA------IAANMCTNARRVLRKS- 31 8364.ENSXETP00000012324_from_367_to_441 85.2% 14.8% ---PNFKESE-----------MNAIAADMCTNARRVV- 32 8364.ENSXETP00000057096_from_370_to_446 87.5% 6.8% --GRGCNFNA--------------VINSKCGTSRRAV- 33 7955.ENSDARP00000076399_from_137_to_215 81.8% 12.6% ---PKFDLRE--SGKDWKV--CLAVINSTARYYRFMD- 34 7955.ENSDARP00000076399_from_313_to_391 81.8% 10.5% ---PWMKLQE--DGSDWKV--CVGSINSAIRKFRYER- 35 59463.ENSMLUP00000009379_from_629_to_707 81.8% 7.4% ---PKCDLSE--GGREWKM--CVKSMNHYIRSLKHGC- 36 9606.ENSP00000369372_from_687_to_765 81.8% 12.6% ---PICDLSE--NGRDWKS--CVTSINSGIRSLRHDV- 37 9365.ENSEEUP00000009235_from_532_to_609 80.7% 11.6% ---PQYDLSD--SGYKWKL--CVAAINSSIRS-NHAR- 38 9913.ENSBTAP00000041696_from_522_to_599 80.7% 11.6% ---PTCDLSE--NGYDWKL--CVMAINSCIYSLRCNL- 39 30611.ENSOGAP00000011395_from_620_to_698 81.8% 8.4% ---PTCDFSE--AGYDWRM--CVTSINSYICILRSGL- 40 9785.ENSLAFP00000009862_from_509_to_587 81.8% 10.5% ---PTFDLAE--TGYDWKM--CVTAVNNFLRSLRYDL- 41 37347.ENSTBEP00000004143_from_620_to_698 81.8% 7.4% ---PTSDLSE--AGYDWKL--SVRGINSCIRSLRFEF- 42 42254.ENSSARP00000011780_from_633_to_711 81.8% 12.6% ---PDRDLSE--SGSDWKL--CVTAINSCIRSLRHDC- 43 9615.ENSCAFP00000018818_from_506_to_584 81.8% 11.6% ---PNCSLSE--AGHDWKL--CVTAINGSIRSLRYDL- 44 9258.ENSOANP00000006140_from_369_to_447 81.8% 11.6% ---PSFDLTE--TGYDWKA--CVAAINSTIRSLRHDH- 45 43179.ENSSTOP00000001714_from_668_to_746 81.8% 11.6% ---KTCDLSE--TGYDWKL--CVTAINSCIRSLRHDF- 46 42254.ENSSARP00000011780_from_463_to_540 78.4% 8.4% ---PNYDLCE--GGKHWEN--CFSDIRSLVTCICSEA- 47 9913.ENSBTAP00000041696_from_341_to_418 80.7% 10.5% ---PNYDLSE--HGEEWQA--CISSVNSLICNLSSRI- 48 9598.ENSPTRP00000037193_from_436_to_515 80.7% 9.5% ---PTCDLHE--HGKDWQD--CISGINSMIYCLCSEG- 49 9986.ENSOCUP00000011730_from_398_to_475 80.7% 11.6% ---PNYDLSE--FGKEWKA--CISNVASLIRYLNSEA- 50 9258.ENSOANP00000006140_from_196_to_273 80.7% 9.5% ---PNYDLSE--YGRDWKT--CITNVNAMIRCLCCET- 51 9031.ENSGALP00000026641_from_211_to_288 80.7% 9.5% ---PNYDLSE--YGKDWKT--CITHINAMIRCLHSET- 52 9365.ENSEEUP00000009235_from_352_to_429 80.7% 9.5% ---SSFDLSE--RGIGWQM--CISSINSLIHFVCYEA- 53 30611.ENSOGAP00000011395_from_434_to_511 80.7% 13.7% ---RSYDLRE--YGRDWKA--CLFNINSLIRYLYYKY- 54 37347.ENSTBEP00000004143_from_441_to_518 80.7% 10.5% ---PNHDMSE--GGREWRA--CIADISSLIHCLCLEA- 55 9685.ENSFCAP00000005983_from_334_to_411 80.7% 9.5% ---PDYDLRE--YGNYWQT--CIADINSLISCLRSEA- 56 9615.ENSCAFP00000018818_from_321_to_400 80.7% 9.5% ---PNHDLRE--RGRDWKT--CIADINSMIYCSYSEA- consensus/100% ...................................... consensus/90% ........tt...............htt.h........ consensus/80% ....thp.pp...........hhttlsshhtp..hth. consensus/70% ....shp.pc......h....shttlsshhpphttph.