cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 AAG57041/1759- 100.0% 100.0%    AEISLAASKDPVIANN---NDLTTLTATVADTEGNAIANSE--VTFTLP-EDVRANFT----LGDGGKVVTDT----EGK    
 2 AAG57041/1862- 100.0%  51.6%    AQVNLNVTEDNFIANN---VGMTRLQATVTDGNGNPLANEA--VTFTLP-ADVSASFT----LGQGGSAITDI----NGK    
 3 AAG57041/1344- 100.0%  44.2%    AQVTLNIPAQQVVTNN---SDSVQLTATVKDPSNHPVAGIT--VNFTMP-QDVAANFT----LENNGIAITQA----NGE    
 4 AAG59515/898-9  98.9%  40.0%    SVMTLNAGSGSAIANN---TNIVTLTASVKDVYGHPLPDED--VKFTLP-ASMTGNFT----LSS-ETARTDA----NGD    
 5 AAG59515/1195-  96.8%  31.6%    GKLELTSSKPETTVHN---SEGITLTATARNARGELMPGQI--ITFSVT-PEGAT-------LSNTGEVLTDQ----SGQ    
 6 AAG57041/2160-  95.7%  28.4%    QKLTLSASSPLIGVNS---PTGATLTATLTSANGTPVEGQV--INFSVT-PEGAT-------LSG-GKVRTNS----SGQ    
 7 AAG57041/938-1 100.0%  33.7%    AALTLSVPSGDITVTN---TAPLHMTATLQDKNGNPLKDKE--ITFSVP-NDVASRFS----ISNSGKGMTDS----NGT    
 8 AAG57041/1245-  95.7%  37.2%    AVVVLQTSKAEIIGNG---VDETTLTATVKDPFDNAVKDLQ--VTFSTN-PADTQ-------LSQ-SKSNTND----SGV    
 9 AAG57041/1448-  95.7%  36.8%    ALVVLQISKNEITGNG---VDSATLTATVKDQFDNEVNNLP--VTFSTA-SSGLT-------LTP-GESNTNE----SGI    
10 AAG57041/840-9  94.7%  35.1%    AQVDLQKSKNEVVADG---NDSATMTATVRDAKGNLLNDVK--VTFNVN-SAAAK-------LSQ-TEVNSHD-----GI    
11 AAG54632/1097-  96.8%  34.7%    ANLQVDAAAQK-VANG---KDAFTLTANVEDKNGNPVPGSL--VTFNLP-RGVKP--L----TGDNVWVKAND----EGK    
12 AAG54632/999-1  93.6%  32.6%    RDMTVKVNNQ--LANG---QSANQITLTVVDTYGNPLQGQE--VTLTLP-QGVTS--K----TGN--TVTTNA----AGK    
13 EAE1_ECOLI/659  92.6%  28.4%    SITEIKADKTTAVANG---QDAITYTVKVMKG-DKPVSNQE--VTFTTT-L-GKLS--------N-STEKTDT----NGY    
14 Q9EXN4/659-746  92.6%  26.3%    SITEINADKKTAKANG---SDAITYTVKVMKD-GKPLSAQD--VTFTAT-L-GTLS--------K-STEKTDA----NGY    
15 EAEA_HAFAL/1-8  91.5%  26.6%    -ITEIKADKTTAVANG---KDAVTYTVKVMKD-GKPLSGEE--VTFTTT-L-GTLS--------K-STEKTNT----NGY    
16 Q9S6R2/659-746  92.6%  24.2%    SITEIKADKTTAKADG---SDAITYTVRVMKE-GAPVVDQK--VTFSKD-F-GTLN--------K-TEATTDQ----NGY    
17 O06896/659-747  92.6%  26.0%    SITEIKADKTTAVANN---QDAITYTVKVMEN-GQPLSGEE--VTFFTD-F-GALD--------K-TKVTTDQ----SGY    
18 AAG50050/15-10  96.8%  25.3%    SITEIKADKTTAKANG---SDAITYTVKVMKN-NQPEANHS--VTFSTN-F-GKLDGN----SNT-QTVKTDE----NGK    
19 O31000/659-749  96.8%  27.7%    SITEIKADKTTAVANG---NDAVTYTVKVMKE-GQPVHGHS--VAFTTN-F-GMFNGK----SQT-QNATTGS----DGR    
20 I41193/659-748  95.7%  25.5%    SITEIKADKTTAVANG---KDAIKYTVKVMKN-GQPVNNQS--VTFSTN-F-GMFNGK----SQT-Q-ATTGN----DGR    
21 I41193/559-648  94.7%  31.6%    GVTDFTADKTSAKADN---ADTITYTATVKKN-GVAQANVP--VSFNIV-S-GTATLG------A-NSAKTDA----NGK    
22 AAG59515/798-8  94.7%  30.5%    KFKQLVADPDTIIAGN---SQGSTLTAIITDFHNNPLKDMK--VNFVAP---GGS--Q----LDN-TTATTDQ----SGI    
23 AAG59515/1001-  93.6%  30.5%    QLQPLTASLNSIVAGN---STGSTLTATILDAYQNPLKDQL--VTFQS----NDV--T----LSE-TEVTTNT----LGQ    
24 AAG57041/2262-  95.7%  33.7%    HVASFIADPSTIAATN---SDLSTLKATVEDGSGNLIEGLT--VYFALK-S-GSA--T----LTS-LTAVTDQ----NGI    
25 AAG59515/1298-  96.8%  22.1%    HVVSVVASPDTITADG---IDSSTITSRVEDDYGFPVEGVD--ISHGLD-TKGSP--V----VNI-PTTRTDQ----SGQ    
26 AAG59515/697-7  96.8%  23.2%    RVATLSATNNDVYADK---KTFNTLTINVTDESDNPLTNHQ--VTFKNE-K-GSA-EF----VEP-PQQNTDA----YGV    
27 AAG57041/739-8  97.9%  29.5%    KIATLSASNNGVLANE---NAANTVSVNVADEGSNPINDHT--VTFAVL-S-GSATSF----NNQ-NTAKTDV----NGL    
28 Q56937/504-593  94.7%  27.4%    LTLTAAVIGDGAPASG---KTAITVEFTVADFEGKPLAGQE--VVITTN-N-GALP-------NK-ITEKTDA----NGV    
29 INVA_YEREN/450  94.7%  17.9%    FVITSEVTDDGALADG---RTPITVKFTVTNIDSTPVAEQE--GVITTS-N-GALP-------SK-VTKKTDA----QGV    
30 AAG57041/1659-  93.6%  26.0%    HLTLLQALFDTVSAG-----DTTNLYIEVKDNYGNGVPQQE--VTLSVSPSEGVTPSN------N-AIYTTNH----DGN    
31 AAG59515/1102-  91.5%  21.9%    KVISITGAEKTITVG-----ENITLRILVQDAFNNVIAGQR--VRLSAQPTTNITIG-------D-TAYTDN-----NGY    
32 Q9WZB1/20-111   91.5%  17.3%    YTHASTPSTIIADNETHIAGRYAFVDVQVLDEYGLPVSGED--VS-FY--VDGAFL----------GEATTDT----SGV    
33 Q9X1S5/473-573  96.8%  17.6%    -QISTTSAQIIADNETHVVGRIGYIDVQVVDESGVPIPGVN--VQLLYQESDGNWYPLSDAITEE-NSFTTDS----NGI    
34 AAG57041/2066-  93.6%  28.1%    TITSLEIPEGQVMVA-----QDVAVKAHVNDQFGNPILNES--VTFSAEPPEHMT-------ISQ-NIVSTDT----HGI    
35 AAG57041/1549-  96.8%  26.9%    KIIELTPVPDSIIAGTPQNSSGSVITATVVDNNGFPVKGVT--VNFTSN-AATAE-------MTNGGQAVTNE----QGX    
36 AAG54632/1199-  96.8%  25.3%    TVSGIEVIGNYALADG---NAKQTYKVTVTDANNNLLKDSE--VTLTAS-PANLV-------LTPNGTAKTNE----QGQ    
37 Q56937/602-688  91.5%  25.3%    DKSTLAAVPTSIIADG---LMASTITLELKDTYGDPQAGAN--VAFDTT--LGNM-----------GVITDHN----DGT    
38 AAG57041/1967-  92.6%  26.3%    KLASLTSVYSFVVSTT----EGATMTASVTDANGNPVEGIK--VNFRGT---SVT-------LSS-TSVETDD----RGF    
39 AAG59515/491-5  92.6%  19.8%    KDSLLSVNPLTVAADK---KSTTTLTVTAHDSDGTPVPGLA--LQTRSE---GVQD--------ITLSDWTDNG---DGS    
40 AAG54632/583-6  94.7%  18.6%    STLSANEPSGDVVADG---QQAYTLTLTAVDSEGNPVTGEA--SRLRFVPQDTNG---------VTVGAISEIK---PGV    
41 Q9F4D5/801-906 100.0%  21.7%    AKLKADADRKTITADG---KDLSYIEVDVTDANGHIVPDAANRVTFDVK-GAGKLVGVDNGSSPDHDSYQADNRKAFSGK    
42 O59039/292-376  89.4%  20.0%    SEKIVEVERPIILAS----QINNTLRVKVLDSKGNPIKG----ITVVVQ---GSR---------DTLYSVTDE----NGI    
   consensus/100%                  .............st.........h...h.p..t....t...............................st......G.    
   consensus/90%                   ..h.ht.s...hhsst....t..thphpl.c..s..l.s....lth.h....s.................ost....tG.    
   consensus/80%                   t.hplpss.tthhuss....p..shpspVhct.spsl.s.t..Vshsh....s.h.........t..t.hTst....pG.    
   consensus/70%                   thhplpsstsphhAss...tsshThospVhDt.GpPlts.p..VsFshs...ssh.........p.spspTsp....sGh    

                     cov    pid 81          .         1         .    ] 115
 1 AAG57041/1759- 100.0% 100.0%    AKVT----LKGTKAGAH--TVTASMAG-GKSEQLV    
 2 AAG57041/1862- 100.0%  51.6%    AEVT----LSGTKSGTY--PVTVSVNNYGVSDTKQ    
 3 AAG57041/1344- 100.0%  44.2%    AHVT----LKGKKAGTH--TVTATLSNNNTSDSQP    
 4 AAG59515/898-9  98.9%  40.0%    AVVT----LRGTKAGEF--TVTATLTRNNTVAYQQ    
 5 AAG59515/1195-  96.8%  31.6%    AKVT----LTSDKVNVY--TVTAIMGKDVPVQSQV    
 6 AAG57041/2160-  95.7%  28.4%    APVV----LTSNKVGTY--TVTASFHNGVTIQTQT    
 7 AAG57041/938-1 100.0%  33.7%    AIAS----LTGTLAGTH--MITARLANSNVSDTQP    
 8 AAG57041/1245-  95.7%  37.2%    AEVT----FKGTVLGVH--TAEATLPN-GNNDTKI    
 9 AAG57041/1448-  95.7%  36.8%    AQAT----LAGVAFGEQ--TVTASLANNGASDNKT    
10 AAG57041/840-9  94.7%  35.1%    ATAT----LTSLKNGDY--TVTASVSS-GSQANQQ    
11 AAG54632/1097-  96.8%  34.7%    AELQ----VVSVTAGTY--EITASAGNSQPSNTQT    
12 AAG54632/999-1  93.6%  32.6%    ADIE----LMSTVAGEH--NISASVNGAQKTVTVK    
13 EAE1_ECOLI/659  92.6%  28.4%    AKVT----LTSTTPGKS--LVSARVSDVAVDVKAP    
14 Q9EXN4/659-746  92.6%  26.3%    AKVT----LTSKTTGKS--LVSARISGSAIDVKAP    
15 EAEA_HAFAL/1-8  91.5%  26.6%    RKVS----LTSANQGKS--LVSASVTMPQLMLKLL    
16 Q9S6R2/659-746  92.6%  24.2%    ATVK----LSSNTPGKA--IVSAKVSGVGTEVKAT    
17 O06896/659-747  92.6%  26.0%    ATVKN---LSSSTSGKA--IVRAKVSDVDTEVKAA    
18 AAG50050/15-10  96.8%  25.3%    ATVK----LTSGAEGSA--VVSAKVSEINTEVKAP    
19 O31000/659-749  96.8%  27.7%    ATIT----LTSSSAGKA--TVSATVSG-GNDVKAP    
20 I41193/659-748  95.7%  25.5%    ATIT----LTSSSAGKA--TVSATVSD-GAEVKAT    
21 I41193/559-648  94.7%  31.6%    ATVT----LKSSTPGQV--VVSAKTAEMTSALNAS    
22 AAG59515/798-8  94.7%  30.5%    VRVH----LTSSKAGSY--SVDASLEVDKNIHQSV    
23 AAG59515/1001-  93.6%  30.5%    ATVT----MTSNIAGQH--NVVVSRKAQASDNKTF    
24 AAG57041/2262-  95.7%  33.7%    ATTS----VRGAITGSV--TVSAVTTAGGMQTVDI    
25 AAG59515/1298-  96.8%  22.1%    VTAT----ITSTLAETL--TVNVQVPGTANQSATI    
26 AAG59515/697-7  96.8%  23.2%    ATIN----MVSQVAEEN--TISATLPNGFSQRIIA    
27 AAG57041/739-8  97.9%  29.5%    ATFD----LKSSKQEDN--TVEVTLENGVKQTLIV    
28 Q56937/504-593  94.7%  27.4%    ARIA----LTNTTDGVT--VVTAEVEGQRQSVDTH    
29 INVA_YEREN/450  94.7%  17.9%    ISIA----LTSFTVGVS--VVTLDIQGQQATVDVR    
30 AAG57041/1659-  93.6%  26.0%    FYAS----FTAXKAGVY--QVTATLENXD-SMQQT    
31 AAG59515/1102-  91.5%  21.9%    AYVN----LLSTQPGVY--QVTATLDNNS-SSKVD    
32 Q9WZB1/20-111   91.5%  17.3%    ARIG----FFSPSEKTY--TFTAVAGGVSRSFDVS    
33 Q9X1S5/473-573  96.8%  17.6%    AKIR----IWPVQSGTV--TFKARLVGNP-SIETQ    
34 AAG57041/2066-  93.6%  28.1%    AEVT----MTPERNGSY--MVKASLANGSSYEKDL    
35 AAG57041/1549-  96.8%  26.9%    ATVTYTNTRSSIESGARPDTVEASLENGSSTLSTS    
36 AAG54632/1199-  96.8%  25.3%    AIFT----ATTTVAAKY--TLTAKVSQADGQESTK    
37 Q56937/602-688  91.5%  25.3%    YSAP----LTSTTLGVA--TVTVKVDGAAFSVPSV    
38 AAG57041/1967-  92.6%  26.3%    AEIL----VTSTEVGLK--TVSASLADKPTEVISR    
39 AAG59515/491-5  92.6%  19.8%    YTQIL---TAGTTSGSV--TLTPQINGESAVKES-    
40 AAG54632/583-6  94.7%  18.6%    YSAA----VSSTRAGNV--VVRAFSEQYQLGTLQQ    
41 Q9F4D5/801-906 100.0%  21.7%    VLAIV---QSTKEAGEI--TVTAKADGLQSSTVKI    
42 O59039/292-376  89.4%  20.0%    AEFN----VEKIGVGAA--EIKIESENYLPASTQV    
   consensus/100%                  h.............t.....h..............    
   consensus/90%                   h.h.....h.s...s.....lpsphtt........    
   consensus/80%                   spht....hpu.tsGth..hlsAphts.t.t.tt.    
   consensus/70%                   Aphs....lsuspsGph..sVoAplss.s.p.pt.