cov pid 1 [ . . . . : . . . 80 1 Q45095/696-773 100.0% 100.0% PVTGVTVNP--TTAQVEVGQSVQLNAS--V--APSNAT---NKQVTWSVSGSSIAS--VSP-NGL--------VTGLAQG 2 O68736/134-211 100.0% 48.7% SVESVTVTP--DSTSVEKGKSVKLRVD--V--QPSNAT---NKKVTWTSKNSDKAT--VDQ-NGN--------VAGVAVG 3 O64327/161-241 100.0% 35.8% AVTGISLDK--STAAVAVAATTQLVVS--V--LPASAS---DKSFRVASSDPSKAT--VTV-SGNTL-----TVTGVAAG 4 AAG55128/162-2 100.0% 38.3% GVTGLTVAP--ASASVNVGATTTLTFT--V--KPDGAS---DKAISVHSTDPQTAT--VTL-NGLVA-----TVKGVKQG 5 AAG55990/170-2 100.0% 32.1% AATGMTVTP--ASTSVVKGQSTTLTVA--F--QPEGAT---DKSFRAVSADKTKAT--VSV-SGMTI-----TVKGVAAG 6 Q9EYD8/160-240 100.0% 29.6% PATAIKVTP--TSGTVAKGKTTTLTVS--F--EPESAT---DKTFRAVSADPSKAT--ISV-KDMTI-----TVNGVATG 7 O68731/164-241 100.0% 33.3% PVKTVSISP--ESPEVKAGETVQLTAQ--I--TPADAG---DKTGVWESDNQEKAT--VDQ-TGL--------VRGVAEG 8 O68736/51-127 98.7% 35.9% FTQSVTITP--TAPSVLVGKTVQLSAG--I--TMSKSA---DSF-TWTSDNDRVAT--VSG-TGL--------VTGVTPG 9 O68831/799-877 100.0% 27.8% GPAFVALDY--TELTLPEGASQRLVVT--T--YPKDADI--NRDVKWYSSNNDIAT--VSR-DGT--------VSALAPG 10 VCAB_BPT3/351- 96.2% 37.2% DPTGVTLSQ--KTMTLVEGASRALTGT--V--QPSDA----NQSLSWSSSAEDVA---VWE-AGK--------VVAKGVG 11 CGKA_ALTCA/316 100.0% 33.3% AVNSVQLSA--AKQTLRKGQSTTLEST--V--LPNCAT---NKKVIYSSSNKNVAT--VNS-AGV--------VKAKNKG 12 VG8_BPB03/349- 100.0% 30.9% AVTQVIVSP--AIASVKQGKSQAFTAY--V--RATDDK---EHEVVWSVDGGSTGTS-ISS-DGVLT------VAANETN 13 VG8_BPPZA/348- 100.0% 32.1% AVTQVIVSP--NIAAVKQGGKQQFTAY--V--RATDGK---DHKVVWSVEGGSTGTA-ITG-DGLLS------VSGNEEN 14 O05734/112-197 100.0% 23.3% VLTSIQINP--VNPSLAKGLTQKFSATGIY--SDNSNKD-ITSAVTWFSSDSSIATI-SNA-QKNQG-----NAYGAATG 15 O05734/381-468 100.0% 18.2% RNSYFNSNQSCKNIVLVKGLTEKFSATGIY--SDNSSKD-ITSAVTWHSSNNSVATI-SNT-KGYQG-----QAHGTGTG 16 O05734/23-107 98.7% 24.4% ALTSIEVSP--VLPSIAKGLTQKFTAIGIF--TDNSKKD-ITDQVTWNSS-SAIVSV-SNL-DDNKG-----LGKAHAVG 17 O05734/293-380 98.7% 19.1% TLTSIEVSP--TRASIAKGMTQKFTATGIF--TDHSKKN-ITEQVTWKSS-SKALSM-LNA-PGEEG-----TGKAIAVG 18 O05734/474-559 100.0% 19.8% ELIEIVLXP--TSSHKAKGLTENFKATGVF--TDNSTKD-ITDQVTWKSSXTAYAKI-SNA-TGSKX-----VVNAISKG 19 O05734/203-288 100.0% 22.1% KLVEIQITP--AAASKAKGLTERFKATGIF--TDNSNSD-ITNQVTWNSSNTDILTV-SNT-NAKRG-----LGSTLKQG 20 O05734/565-650 100.0% 27.9% KVVSIEVIP--NNISFAKGNSYQFKATGIY--TDHSEAD-ITEQVTWSSSNPKIASV-ENT-FGSAG-----LVNTTNIG 21 O05734/656-741 100.0% 16.3% LLRYIMITP--SYAGIEKGYTKQFSAIGTY--SDQSTKD-LTEDVTWFSSNPSSVVI-ENT-PGKKG-----LAFASELG 22 O05734/748-833 100.0% 15.1% GIVNITISL--SSISKTKGSTHQFKATGKF--ENGAEID-LTELVTWSSSNPTVVSI-SNV-DDERG-----LATALSVG 23 EAE1_ECOLI/757 96.2% 18.1% DDGNIEIVG---TGVK-GKLPTVWLQYGQV--NLKASGG--NGKYTWRSANPAIASV-DAS-SGQ-------VTLK-EKG 24 Q9EXN4/757-835 94.9% 20.5% DDGNVEIVG---TGIK-GTLPTVWLQYGQV--KLKASGG--DGKYTWSSANTGIASV-DS--TGQ-------VTLR-DKG 25 AAG50050/116-1 96.2% 16.9% IDNNVNIIG---TSAN-AALPNIWLQYGQF--KLTAKGG--DGKYKWHSKDTSVASV-DAS-TGQ-------VTLL-KKG 26 I41193/758-837 96.2% 12.0% IDNKVDIIG---NNVKRSMLPNIWLQYGQF--KLKASGG--DGTYSWYSENTSIATV-DA--SGK-------VTLN-GKG 27 Q9S6R2/757-835 94.9% 21.7% DGDKVTVIG---TGIT-GALPKNWLQYGQV--KLQATGG--NGKYTWKSSNTKIASV-DN--SGV-------ITLN-EKG 28 O06896/758-836 94.9% 18.1% DSNKVTVIG---TGVT-GSLPKNWLQYGQA--KLQATGG--NGKYTWKSSDTKIASV-DS--SGV-------ITPEWERE 29 Q9UF31/29-104 91.0% 18.1% VFPPFRLLP--------EKMTLIPMNMMQV--MSEGGPQ-PQSIVHFSISNQTVAVV-NR--RGQ--------VTGKIVG 30 O94980/113-188 91.0% 19.3% VFPPFRLMP--------RKVTLLIGATMQV--TSEGGPQ-PQSNILFSISNESVALV-SA--AGL--------VQGLAIG 31 6741968/294-37 98.7% 14.1% VQDAVTVAL--NNSSLKVGEESGLTVK-----DQDGKDV-VGAKVELTSSNTNIVVV-SSG-EVSV------SAAKVTAV 32 Q9RB35/382-456 89.7% 15.8% VADGVTVAL--GSTSLEQGQTVGLTVK-----DQAGKDV-KDAKVEVTSYNTNLVTV-TNP-DKDP------ATVKVTAN 33 Q9RZQ5/734-812 100.0% 29.1% TVSNLSVTP--DNSTLPVGGTQTFKAI--Y--TTSPPN--CAVNVSWSSSDPSKLT--VDE-RGV--------ARAEAAG 34 BAB21741/66-14 100.0% 29.1% LVSGVSFTP--ETKSITVNADDNVEPN--I--APSTAT---NKTLKYTSEHPEFVTV-DER-TGA--------IHGVAEG 35 Q9T1B0/26-102 98.7% 28.2% SPSSVEVGH--NTITVKVGETFTINAS--V--LPVGAS----QEVTYTSSNPPKAK--INS-VGT--------GEGVAEG 36 O80052/235-310 96.2% 35.4% EVTSVNVTD--EQVTVKVDATKQLSAT--T--EPSGQ------KVTYAVTEGQRYAS-VTS-TGL--------VKGLAEG 37 Q37899/375-456 100.0% 30.5% AVTAITVKSAGNVATLNRSATLQMSVE--V--TPSSAK---NKEVTWAITAGDAAT--INA-TGLLT------ADASKTG 38 P91495/436-513 97.4% 15.0% IVDPVRIVP----PVIYLPFVSEKRSQ--I--DLTATGG--SGLFEWTSEDGHVATV-DLL-TGR--------MTANSLG 39 Q9FI62/1153-12 94.9% 17.5% VYSPPRLHP--QGIFLVPGASYVLTIE--------GGPT-MNVSVDYTTVDNEVAK--IEK-SGR--------LYATSPG 40 FRUA_STRMU/924 98.7% 24.7% PVAMNTTTA--KELALQVGQTQDLQVY--L--APASVR----QDVEWTISDPSLVR--TSQ-KGNVL-----HLTAVKKG 41 O68840/554-643 100.0% 18.9% VLETIAVDS--TGVSVAKGQKATFKVT--L--KDQYGNK-FTGNVNVTSDKTETATVSVSN-SGIGQSEYTVTVNGVAEG 42 O68840/657-737 98.7% 18.3% VLDDGKIDK--SATESPANNDVQLKVY--A--VDANGN--IVGDITNDVTITSEAT---DT-NGVIVN-----ASKSTAN 43 SLAP_BACCI/111 100.0% 22.2% AVKALKLDR--GTYSMNKGESLRLAVTAEY--SSSSTD--VTGQAAYASLDPAVVS--VDA-TGR--------ITALREG 44 Q9FI62/472-548 96.2% 20.0% DDTPKVLLP--WTPAVYQEMELIVTGG-----CAKASS-----DYKWFTSDISILS--VSA-YGI--------IQAKRPG 45 SLAP_BACAN/402 98.7% 16.0% DFTSKDFKQ---NNKVYEGDNAYVQVE--L--KDQFNAV-TTGKVEYESLNTEVAVV-DKA-TGK--------VTVLSAG 46 O68840/472-548 98.7% 19.2% DKDGNQISS--GTLTLTAKFKDQYGNE--L--TGKVAG----TDYTFESLNPEVLV--VAP-DGS--------VTPIVPG 47 Q9RB35/505-595 98.7% 22.8% AFKAFATPT---TSVIEGSGTYELAAFGETNGNPDTAHVNFTGATRVTSSNPIVATALLDDTAGVG----VVKVTPLSAG 48 6741968/406-49 100.0% 15.4% PQNTVAFNKAEKVTSMFAGETKTVAMYDTKNGDPETKP-VDFKDATVRSLNPIIATAAING-SELLVT-----ANAGQSG 49 P91495/744-819 92.3% 18.3% INTNVELVL--RGSGVCNGAATPLAS------INGLSP-------KWTTSDSGLLT--VNR-HGIEAD----ATSGKKEG 50 O31643/35-112 98.7% 19.0% EVKNISISP--THVIKIQDYNLPLKVG-----ETYSVKN--NSATRYWTDNQKVAE--VDQ-NGL--------VTAKSKG 51 Q9FI62/1542-16 96.2% 19.0% VSVGAHIFP--QNPVIHTGNLLNFSIT-----G--ADN---EVTGQWFTSNRSVIS--VNVASGQ--------AKAISQG consensus/100% ......................................................h..................h...... consensus/90% ....hth........h..t....h..........tst......thth.s.t.thh....t..ts.........h.t.t.s consensus/80% ..sthpl.....t..h..s.s..hts...h..t.tsst...ptphpatopssphss...s..sG.........s.s.t.G consensus/70% shsslplss..tsssh.tu.s.phpsh..h..pspsss...stphpapSsssphso..ss..sG.........spuhttG cov pid 81 . 1 ] 102 1 Q45095/696-773 100.0% 100.0% TTTVTATTA-DGNKAASAT--- 2 O68736/134-211 100.0% 48.7% TATIEVVSQ-DGSHKATAT--- 3 O64327/161-241 100.0% 35.8% TVEIIVMSN-DGNFVAICK--- 4 AAG55128/162-2 100.0% 38.3% SVSIVGMTA-DGNFVAVAA--- 5 AAG55990/170-2 100.0% 32.1% KVNIPVVSG-NGEFAAVAE--- 6 Q9EYD8/160-240 100.0% 29.6% KVQIPVVSG-NGQFAAVAE--- 7 O68731/164-241 100.0% 33.3% SANISFTSN-SGGKKATKA--- 8 O68736/51-127 98.7% 35.9% KVKITATDK-QTQLSASVE--- 9 O68831/799-877 100.0% 27.8% RADITVVAN-VGGQQTACR--- 10 VCAB_BPT3/351- 96.2% 37.2% TADITATTS-NG-LIASCK--- 11 CGKA_ALTCA/316 100.0% 33.3% TATITVKTK-NKGKIDKLT--- 12 VG8_BPB03/349- 100.0% 30.9% QLTVKATVD-IGTADEPKP--- 13 VG8_BPPZA/348- 100.0% 32.1% QLTVKATVD-IGTEDKPNL--- 14 O05734/112-197 100.0% 23.3% ATDIKATFG-KVSSPVSTL--- 15 O05734/381-468 100.0% 18.2% TVDIKATLG-NVSSQVSXL--- 16 O05734/23-107 98.7% 24.4% DTTITATLG-KVSGKTWLT--- 17 O05734/293-380 98.7% 19.1% KHXYYCNLR-KTFRENXYYRYS 18 O05734/474-559 100.0% 19.8% TSHISATLG-SISSANATF--- 19 O05734/203-288 100.0% 22.1% TVKVTASMG-GIEDSVDFT--- 20 O05734/565-650 100.0% 27.9% STNITAKLS-DTVSGXSVL--- 21 O05734/656-741 100.0% 16.3% EPDITVFYD-HHTQSSYTP--- 22 O05734/748-833 100.0% 15.1% SSKISVDYN-SISSSIDFE--- 23 EAE1_ECOLI/757 96.2% 18.1% TTTISVISS-DNQTATYTI--- 24 Q9EXN4/757-835 94.9% 20.5% STTITVVSG-DKQTATYII--- 25 AAG50050/116-1 96.2% 16.9% TTTIEVVSG-DNQTAAYTI--- 26 I41193/758-837 96.2% 12.0% SVVIKATSG-DKQTVSYTI--- 27 Q9S6R2/757-835 94.9% 21.7% SATITVVSG-DNQSATYTI--- 28 O06896/758-836 94.9% 18.1% YHNYGRIC--DNQSATYTI--- 29 Q9UF31/29-104 91.0% 18.1% TAVVHGTIQ-TVNEDTGKV--- 30 O94980/113-188 91.0% 19.3% NGTVSGLVQ-AVDAETGKV--- 31 6741968/294-37 98.7% 14.1% KPGTADVTA-KVTLPDGVVLT- 32 Q9RB35/382-456 89.7% 15.8% SDKLAGSTD-VV---------- 33 Q9RZQ5/734-812 100.0% 29.1% TVTLTATVT-PGSGAPVSA--- 34 BAB21741/66-14 100.0% 29.1% TSVITATST-DGSDKSGQI--- 35 Q9T1B0/26-102 98.7% 28.2% TANITVASK-ESTSINKVV--- 36 O80052/235-310 96.2% 35.4% NATVTATAG-KQTDTVQIT--- 37 Q37899/375-456 100.0% 30.5% AVTVEATAK-DGSGVKGTK--- 38 P91495/436-513 97.4% 15.0% STKVKATDK-RNDQLRDIA--- 39 Q9FI62/1153-12 94.9% 17.5% NTTIYATIY-GSEGAVICQ--- 40 FRUA_STRMU/924 98.7% 24.7% KLTITAISK-ENPSLSKIF--- 41 O68840/554-643 100.0% 18.9% STTITIKSG-TKEVKVPVN--- 42 O68840/657-737 98.7% 18.3% GDTVYVITD-NGSKKVGKE--- 43 SLAP_BACCI/111 100.0% 22.2% SGTVQATYE-GHTATARVS--- 44 Q9FI62/472-548 96.2% 20.0% IATVKVVSTFDSQNFDEVIV-- 45 SLAP_BACAN/402 98.7% 16.0% KAPVKVTVK-DSKGKELVS--- 46 O68840/472-548 98.7% 19.2% TALVKVKYG-EVTKTIPVT--- 47 Q9RB35/505-595 98.7% 22.8% TTTVTVTMK-DGSRKSFPI--- 48 6741968/406-49 100.0% 15.4% KASFEVTLK-DNTKRTFTV--- 49 P91495/744-819 92.3% 18.3% QVTIQAQAG-SLSTKYEIT--- 50 O31643/35-112 98.7% 19.0% KATITLFKG-TAVFGKVYV--- 51 Q9FI62/1542-16 96.2% 19.0% STHVTFKGH-GLKLQTKVT--- consensus/100% ...h.................. consensus/90% ps.l.sh.t.t........... consensus/80% psplpsh.t.p.p....h.... consensus/70% psslpss.t.ssptts.hh...