cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 2497242/1-0    100.0% 100.0%    QEEEARLASFR--NWPFY---VQGI-SPCVLSEAGFVFTGK---------------QDTVQCFSCGGCLGNWEEGDDPWK    
 2 2497242/2-0     98.6%  49.3%    AYEELRLDSFK--DWPR----ESAV-GVAALAKAGLFYTGI---------------KDIVQCFSCGGCLEKWQEGDDPLD    
 3 2497236/3-0     97.3%  45.2%    NNENARLLTFQ--TWP-----LTFL-SPTDLAKAGFYYIGP---------------GDRVACFACGGKLSNWEPKDNAMS    
 4 2497240/1-0     97.3%  37.0%    STEEARLRTSH--AWP-----LMCL-WPAEVAKAGLDDLGT---------------ADKVACVNCGVKLSNWEPKDNAMS    
 5 2134780/1-0     98.6%  49.3%    YSEEARLKSFQ--NWPD----YAHL-TPRELASAGLYYTGI---------------GDQVQCFCCGGKLKNWEPCDRAWS    
 6 1170470/1-0     97.3%  38.4%    RLEEVRLNTFE--KWP-----VSFL-SPETMAKNGFYYLGR---------------SDEVRCAFCKVEIMRWKEGEDPAA    
 7 1170471/1-0     97.3%  38.4%    KNKAARLGTYT--NWP-----VQFL-EPSRMAASGFYYLGR---------------GDEVRCAFCKVEITNWVRGDDPET    
 8 2133636/1-0     97.3%  34.2%    LLEANRLVTFK--DWP-----NPNI-TPQALAKAGFYYLNR---------------LDHVKCVWCNGVIAKWEKNDNAFE    
 9 2497243/1-0     97.3%  39.7%    NREETRLKTFT--DWP-----LDWL-DKRQLAQTGMYFTHA---------------GDKVKCFFCGVEIGCWEQEDQPVP    
10 1170470/2-0     98.6%  39.7%    AHEAARVKSFH--NWPRC---MKQR--PEQMADAGFFYTGY---------------GDNTKCFYCDGGLKDWEPEDVPWE    
11 2497243/2-0     98.6%  45.2%    AIETARLRTFE--AWPRN---LKQK--PHQLAEAGFFYTGV---------------GDRVRCFSCGGGLMDWNDNDEPWE    
12 2134780/2-0     95.9%  41.1%    ADYEARIFTFG--TWIYS---VNK----EQLARAGFYALGE---------------GDKVKCFHCGGGLTDWKPSEDPWE    
13 2497236/1-0     98.6%  50.7%    QTHAARFKTFF--NWPSS---VLVN--PEQLASAGFYYVGN---------------SDDVKCFCCDGGLRCWESGDDPWV    
14 2133636/2-0     98.6%  38.4%    ACVDARLRTFT--DWPIS---NIQP--ASALAQAGLYYQKI---------------GDQVRCFHCNIGLRSWQKEDEPWF    
15 1469005/1-0     98.6%  25.3%    ISAAERFASFK--GFVYDKRINIAC-TSEKLARAGFYSTASPEF------------PASAKCPFCMLEINFE-QCDDPWE    
16 1469005/2-0     98.6%  27.8%    LTFDHRLATFQ--NFIFDKKRNVKC-TSKKLAKAGWFSIANKKD------------KTSAKCPFCLVELDFD-ESDDPWE    
17 1403290/1-0     97.3%  30.3%    TFYKDRLMTFK--NFEYDRDPDAKC-TSQAVAQAGFYCTG----------------PQSGKCAFCNKELDFD-PEDDPWY    
18 2134780/3-0     98.6%  39.7%    VEEFNRLKTFA--NFPS----GSPV-SASTLARAGFLYTGE---------------GDTVRCFSCHAAVDRWQYGDSAVG    
19 2497236/2-0     98.6%  38.4%    SCELYRMSTYS--TFPA----GVPV-SERSLARAGFYYTGV---------------NDKVKCFCCGLMLDNWKRGDSPTE    
20 419123/1-0      97.3%  30.7%    SNLQSRMDTFVN-FWP----AALRD-MITNIAEAGLFYTGR---------------GDETVCFFCDCCVRDWHTNEDTWQ    
21 2497245/1-0     97.3%  33.8%    AHPSARRATFD--HWP----AALNA-LTHDIAEAGMFHTML---------------GDETACFFCDCRVRDWLPGDDPWQ    
22 1353180/1-0     97.3%  37.2%    ASYDERLNSFQ--NWP----IQLLP-SKEQLSRAGFIYLNI---------------GDQVQCFYCDLKLKEWKRSDNPFE    
23 2315863/1-0    100.0%  36.4%    FLKDHRISTFK--NWPFL--EGCAC-TPERMAEAGFIHCPTENE------------PDLAQCFFCFKELEGWEPDDDPIE    
24 2497242/3-0     97.3%  31.1%    RSEAKRLKTFVT-YEP-----YSSW-IPQEMAAAGFYFTGV---------------KSGIQCFCCSLILFGAGLTRLPIE    
25 2370513/1-0     97.3%  27.7%    CNYSKRLDTFQKKKWP-----RAKP-TPETLATVGFYYNPISESNS-------EERLDNVTCYMCTKSFYDWEDDDDPLK    
26 2370513/2-0    100.0%  27.2%    ALTKCREQTFVDKVWPYTN-RPDYHCEPSVMAASGFVYNPT------------ADAKDAAHCLYCDINLHDWEPDDDPYT    
27 419123/2-0      97.3%  24.3%    DMLIERHSSFE--NYP-----IENTAFINSLIVNGFKYNQV---------------DDHVVCEYCEAEIKNWSEDECIEY    
28 2497247/1-0     91.8%  27.0%    SSVDARNQSFA----------IHDIKNYEKFSNAGLFYTS----------------PTEITCYCCGMKFCNWLYEKHPLQ    
29 1352900/1-0    100.0%  21.1%    NVINLRKFTFQD-NWPHSGSQNEHPLGIEKMVNAGLMRYDSSIEGLGDPSMDKTLMNDTCYCIYCKQLLQGWSINDDPMS    
   consensus/100%                  .....R..o...................t.h..sGh.....................t.h.C..C...h.....tc....    
   consensus/90%                   .....Rh.oa....a.............pthutsGhh....................sts.C..C.h.l.....t-psh.    
   consensus/80%                   ...ttRhtoFt..taP............pthApuGhhhhs.................DpstChhCthtlttW..t-psht    
   consensus/70%                   t..ttRhtTFp..sWP........h..spplApAGhaahs................sDpspChhCshtlpsWp.sDsPhp    

                     cov    pid 81          .       ] 98 
 1 2497242/1-0    100.0% 100.0%    EHAKWFP----KCEFLRS    
 2 2497242/2-0     98.6%  49.3%    DHTRCFP----NCPFLQN    
 3 2497236/3-0     97.3%  45.2%    EHLRHFP----KCPFIEN    
 4 2497240/1-0     97.3%  37.0%    EHRRHFP----NCPFVEN    
 5 2134780/1-0     98.6%  49.3%    EHRRHFP----NCFFVLG    
 6 1170470/1-0     97.3%  38.4%    DHKKWAP----QCPFVKG    
 7 1170471/1-0     97.3%  38.4%    DHKRWAP----QCPFVRN    
 8 2133636/1-0     97.3%  34.2%    EHKRFFP----QCPRVQM    
 9 2497243/1-0     97.3%  39.7%    EHQRWSP----NCPLLRR    
10 1170470/2-0     98.6%  39.7%    QHVRWFD----RCAYVQL    
11 2497243/2-0     98.6%  45.2%    QHALWLS----QCRFVKL    
12 2134780/2-0     95.9%  41.1%    QHAKWYP----GCKYLLE    
13 2497236/1-0     98.6%  50.7%    QHAKWFP----RCEYLIR    
14 2133636/2-0     98.6%  38.4%    EHAKWSP----KCQFVLL    
15 1469005/1-0     98.6%  25.3%    KHKSGSP----HCEFVMI    
16 1469005/2-0     98.6%  27.8%    EHQKFSA----SCDFIKL    
17 1403290/1-0     97.3%  30.3%    EHTKRDE----PCEFVRI    
18 2134780/3-0     98.6%  39.7%    RHRKVSP----NCRFING    
19 2497236/2-0     98.6%  38.4%    KHKKLYP----SCRFVQS    
20 419123/1-0      97.3%  30.7%    RHAAENP----QCYFVXS    
21 2497245/1-0     97.3%  33.8%    RHALANP----QCYFVVC    
22 1353180/1-0     97.3%  37.2%    EHKKHTQDLKINCLFVKS    
23 2315863/1-0    100.0%  36.4%    EHKKHSS----GCAFLSV    
24 2497242/3-0     97.3%  31.1%    DHKRFHP----DCGFLLN    
25 2370513/1-0     97.3%  27.7%    EHITHSP----SCPWAYI    
26 2370513/2-0    100.0%  27.2%    EHKRRRA----DCVFFTW    
27 419123/2-0      97.3%  24.3%    AHVTLSP----YCAYANK    
28 2497247/1-0     91.8%  27.0%    VHGFWSR----NCGFMRA    
29 1352900/1-0    100.0%  21.1%    RHYKVSQNG--NCYFFQT    
   consensus/100%                  .H..........C.hh..    
   consensus/90%                   pHhhh......tC.ah..    
   consensus/80%                   pHtph.s....pC.al..    
   consensus/70%                   cHt+h.s....pC.Fl..