cov pid 1 [ . . . . : . . . 80 1 179529/1-226 100.0% 100.0% RISQKGLDYASQQGTAA---LQKELKRIKIPDYSDSFKIKH--------------LGKGHYSFYSMDIREFQLPS---SQ 2 BPI_BOVIN/1-226 100.0% 63.3% RITQKGLDYACQQGVLT---LQKELEKITIPNFSGNFKIKY--------------LGKGQYSFFSMVIQGFNLPN---SQ 3 A54136/1-224 99.1% 49.1% RITDKGLQYAAQEGLLA---LQSELLRITLPDFTGDLRIPH--------------VGRGRYEFHSLNIHSCELLH---SA 4 BPI_RABIT/1-222 98.2% 61.9% ---QKGLDYACQQGVAV---LQKELEKIRIPDVSGKFKLRP--------------FGKGHYNFHSLVVRSFQLPN---PQ 5 LBP_RABIT/1-224 99.1% 43.4% RITDKGLEYAAREGLLA---LQRKLLEVTLPDSDGDFRIKH--------------FGRAQYKFYSLKIPRFELLR---GT 6 PLTP_MOUSE/1-21 96.9% 25.7% RVTSAALDLVKQEGLRF---LEQELETITIPDVYGAK-------------------GHFYYNISDVRVTQLHLIS---SE 7 Q17654/1-242 96.9% 12.4% RVNEFGLHEAANFTRQW---LSMAGPHMKMPEIRLFSVILKTVSKIHML----AQSFYNSFAGGEMTVTNITIKRFVPPL 8 Q18869/1-234 98.2% 16.0% RILPRGLAYLNHLAANL---LADQLPRLILPDVEHILPSNQ---------------GIIYISKVHLSRFRRAEHH---QL 9 CETP_HUMAN/1-22 99.6% 22.3% RITKPALLVLNHETAKV---IQTAFQRASYPDITGEKAMML--------------LGQVKYGLHNIQISHLSIAS---SQ 10 O17781/1-228 97.3% 17.5% RLNSRAFQYASTLVGGI---LNTEIKKARIPPISQCIPMVQ-----------------GCVNIYNLYVSRYRCPQRV-VL 11 O17768/1-230 96.0% 13.9% --MPNGLAYLREVGMKV---INEQILKLQLPNIREPIEN-------------------GEVSIYNLQMSKYWAPQEY-AL 12 Q17151/1-219 96.0% 15.6% ---QEALDYGSRIAPDV---LRKVLNKASFENLEDKE-------------------GPVSYKFSKISLEQSEIES---AN 13 Q93796/1-243 93.4% 13.6% RLNQKAVDYVADLASDA---LPAILNNLSPPDIVTDM-----------------------AKITKLHISNVAKPN---LS 14 Q17738/1-221 96.9% 14.9% RVTPTGTQYVASVVAAA---FSSHFADIKPPKERKDHQLTT----------------ISTVTLRRLMLETLQLDKQL-VT 15 Q05701/1-243 94.7% 10.6% RIDKDELGKAIQNSLVGGPILQNVLGTVTSVNQGLLGAGGLLGGGGLL------SYGGLFSLVEELSGLKIEELT---LP 16 Q05704/1-214 91.6% 14.6% GGLLGTGGILANEGILA---GQGGLLGGGGLLGDGG----LLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPR---VS 17 Q61114/1-230 95.1% 12.5% -IQKHLTQALKDHDATA---ILQELPLLRAMQDKSGSIPI--------------LGQLSCTPFPEIHQYWMKVTSANILQ consensus/100% ......h..h.p.s..h...h...h..h..................................h.th........p..... consensus/90% .....ththhtp.s..h...h.t.h.tht.................................h.ph.h.tht..p..... consensus/80% .h..tuhthhtp.sh.h...lpptl.phphsp.pt.........................hth.pl.h.phph.p..... consensus/70% RlpppuLphssp.uhts...LpptL.clphPshptth...................h.sphshhplplpphpl.p...st cov pid 81 . 1 . . . . : . 160 1 179529/1-226 100.0% 100.0% ISMVPNV-GLKFSISNANIKISGKWKAQKRF-------LKMSGNFDLSIEGMSISADLKLGSNPT--SGKPTITCSSCSS 2 BPI_BOVIN/1-226 100.0% 63.3% IRPLPDK-GLDLSIRDASIKIRGKWKARKNF-------IKLGGNFDLSVEGISILAGLNLGYDPA--SGHSTVTCSSCSS 3 A54136/1-224 99.1% 49.1% LRPVPGQ-GLSLSISDSSIRVQGRWKVRKSF-------FKLQGSFDVSVKGISISVNLLLGSES---SGRPTVTASSCSS 4 BPI_RABIT/1-222 98.2% 61.9% IRLQPNV-GLRVSISNANVRIGGRWKARKGF-------IKVRGKFDLSVEGVSISADLKLGSVPA--SGRATVTCSSCSS 5 LBP_RABIT/1-224 99.1% 43.4% LRPLPGQ-GLSLDISDAYIHVRGSWKVRKAF-------LRLKNSFDLYVKGLTISVHLVLGSES---SGRPTVTTSSCSS 6 PLTP_MOUSE/1-21 96.9% 25.7% LHFQPDQ-DLLLNISNASLGLHFRRQLLYWF-------LYDGGYINASAEGVSIRTGLQLSQDS---SGRIKVSNVSCEA 7 Q17654/1-242 96.9% 12.4% IRFRPSD-HSFLYMSTLSGYAQVSAEWAVESQFLHMLKIPLEGQIHAQMTGLISEIAMQITQDN-------EVEVHHCVA 8 Q18869/1-234 98.2% 16.0% NSTAPNK--ISWTMQNMDIGLLGDLSGSVNIVV----PLNLTGQVEILAQGLTFHLESSIEKGK---NGSAKVTSLSCLA 9 CETP_HUMAN/1-22 99.6% 22.3% VELVEAK-SIDVSIQNVSVVFKGTLKYGYTT-------AWWLGIDQSIDFEIDSAIDLQINTQLTCDSGRVRTDAPDCYL 10 O17781/1-228 97.3% 17.5% YPAPPNR--IVLQVQNVDLGVTGNLGGQIVVLL----PIALSGIVQLNIHQATITVQLAIERGP----RGPYVRLLSCDM 11 O17768/1-230 96.0% 13.9% DMSEPST--FAWSMSKMHLRAAGDFQATLNSPLLLP-TVPITGHFEALLGHISLYITVNMERNA---NGAPQVRSTGCRS 12 Q17151/1-219 96.0% 15.6% FSFDPSINGIRASIQRLSAFVRLDYESSIDM-------SITKMEHSGSVDIPSGCRCGPESCRER-DSVRRAKPNLECKA 13 Q93796/1-243 93.4% 13.6% AKFIDGK-GVAYNISLASFRASAYAEISVFV-------WSYEGDFTAELRELSIESELHFDYNGT-----TTVNASVCNV 14 Q17738/1-221 96.9% 14.9% TTTSDGL--LRITVQNISVSSSAVLSGELRE-------IKLQDNVTFRTANLRIDTAIRIMKNAG---GNPALKMESCKI 15 Q05701/1-243 94.7% 10.6% TVSIKL---LPGVGVQLSLHTKVSLHGSGP----------LVGLLQLAAEVNVSSKVALGMSPR----GTPILILKRCNT 16 Q05704/1-214 91.6% 14.6% VRLLPG---VGVYLS-LYTRVAINGKSLIGF-------------LDIAVEVN-ITAKVRLTMDRT---GYPRLVIERCDT 17 Q61114/1-230 95.1% 12.5% LDVQPS-----TYXQELVVRIPLDMVAGLNTPL-----IKTIVEFQMSTEV---QALIRVERSK---SGPAHLNLSDCSS consensus/100% ...........h......h...h.h...h................p..........................h....C.. consensus/90% .....s.....h.hp.h.hhh.h.ht..h...............hph.ht.....h.h.h............h...tC.. consensus/80% hp..ss...l.h.hpphshththphphth.........h.h.s.hph.hp....phth.htpt.....s.stlp..pCps consensus/70% hph.Ps...lthslpphslthpsphpsphsh.......h.htGphphtscshshphtlpltpst....GtsplsspsCps cov pid 161 . . . 2 . . . . 240 1 179529/1-226 100.0% 100.0% HINSVHVHIS--KSKVGWLIQLFHKKIESALRNKMNSQV----CEKVTNSVSSKLQPY-------------------FQT 2 BPI_BOVIN/1-226 100.0% 63.3% GINTVRIHIS--GSSLGWLIQLFRKRIESLLQKSMTRKI----CEVVTSTVSSKLQPY-------------------FQT 3 A54136/1-224 99.1% 49.1% DIADVEVDM---SGDLGWLLNLFHNQIESKFQKVLESRI----CEMIQKSVSSDLQPY-------------------LQT 4 BPI_RABIT/1-222 98.2% 61.9% NINRARLRSQ--ASWGGW-LKLFHKRIESSLRNTMNSKI----CQVLTSSVSSKLQPY-------------------VET 5 LBP_RABIT/1-224 99.1% 43.4% DIQNVELDI---EGDLEELLNLLQSQIDARLREVLESKI----CRQIEEAVTAHLQPY-------------------LQT 6 PLTP_MOUSE/1-21 96.9% 25.7% SVSKMNMAF---GGTFRRMYNFFSTFITSGMRFLLNQQI----CPVLYHAGTVLLNSL-------------------LDT 7 Q17654/1-242 96.9% 12.4% QIRDLRVAFE--GSVAADVIHWFRQSITRAIRRTLEEEY----CDMMRNHWLPWVEAQ-------------------LYQ 8 Q18869/1-234 98.2% 16.0% TIRDVTVTNHNGG-LFGLAVSVFKQGVSDNVRHMLQTII----CKKVRKYIDEDANEK-------------------LAE 9 CETP_HUMAN/1-22 99.6% 22.3% SFHKLLLHLQ-GEREPGWIKQLFTNFISFTLKLVLKGQI----CKEIN-VISNIMADF-------------------VQT 10 O17781/1-228 97.3% 17.5% QIGYADAYIENGGLVGDIVNSQFRSQISNQVRQMIPGQV----CGQLPTIINEKINSK-------------------LGA 11 O17768/1-230 96.0% 13.9% AIGYVDLNVRNTGVITDFFINAFKAFLIGNFKPQVEQKM----CKMIESIIDRDMNIL-------------------LSN 12 Q17151/1-219 96.0% 15.6% SIKDSEFNFS--SIVVHWMYSTMSKVLPNKVREWTEERL----CRVITDYIDNKMPET-------------------IKE 13 Q93796/1-243 93.4% 13.6% THSELSLVF-----PPGSSLSALQSEIKGQIVSALRDAV----CTTAVEALTFVMAQKPIPPESPNYQKPEAGDPNGFSV 14 Q17738/1-221 96.9% 14.9% VTQGIKLVT---KPMDPRNGKSLADAIANDANTMFSDLI----CSKIDHIVSNRVNQR-------------------FAL 15 Q05701/1-243 94.7% 10.6% LLGHISLTS-------GLLPTPIFGLVEQTLCKVLPGLL----CPVVDSVLSVVNELLG----------------ATLSL 16 Q05704/1-214 91.6% 14.6% LLGGIKVKL-----LRGLLPNLVDNLVNRVLANVLPDLL----CPIVD-VVLGLVNDQ-------------------LGL 17 Q61114/1-230 95.1% 12.5% NESTLRLSL---LHKLSFVVNSLGKNVMNLLVPALPQIVKNHLCPVIQQAFDDMYEDF-------------------LRL consensus/100% ..t...h.............p.h.t.l...h...h.t.h....C..h...h..........................h.. consensus/90% .ht.hph.........t...p.htt.l.t.h...h.t.h....C..h...h...ht.....................ht. consensus/80% thtthplth.......shhhp.hpp.lttthp.hh.p.l....C.hlpphls.hhp.h...................ht. consensus/70% slpplclph...t..hshhhphhpp.lpstlpphlpptl....Cphlpphlsshhp.h...................lpt cov pid 241 : . . . . 3] 301 1 179529/1-226 100.0% 100.0% LPVMTKI--------DSVAGINYGLVAPPATT------------AETLDVQMKGEFYSENH 2 BPI_BOVIN/1-226 100.0% 63.3% LPVTTKL--------DKVAGVDYSLVAPPRAT------------ANNLDWLLKGEFFSLAH 3 A54136/1-224 99.1% 49.1% LPVTTEI--------DSFADIDYSLVEAPRAT------------AQMLEVMFKGEIFHRNH 4 BPI_RABIT/1-222 98.2% 61.9% LPLKERL--------DSVAGIDYSLVAPPRAT------------ADSLDMQLKGEFYNVAR 5 LBP_RABIT/1-224 99.1% 43.4% LPVTTQI--------DSFAGIDYSLMEAPRAT------------AGMLDVMFKGEIFPLDH 6 PLTP_MOUSE/1-21 96.9% 25.7% VPVRSSV--------DDLVGIDYSLLKDPVVS------------NGNLDMEFRGAFFPLKE 7 Q17654/1-242 96.9% 12.4% FPTNLTI----------SHNPDVTLIQTMQSIAM---------TQHHVDVRMRSDLIWDDE 8 Q18869/1-234 98.2% 16.0% AQTSSKL-------ADALETNALKMISVGGDEKSR------IDISSIFDSSLASKFFIDFR 9 CETP_HUMAN/1-22 99.6% 22.3% RAASILS--------DGDIGVDISLTGDPVIT------------ASYLESHHKGHFIYKNV 10 O17781/1-228 97.3% 17.5% LPQTVAL-------QQMISLFGGALGLGGGGG------------GTCPSTCPKQPVFIPST 11 O17768/1-230 96.0% 13.9% MPLKIRI-----NENNLDIIGETFGVAPRKHH------------RAGKLSNLNAKNITLTH 12 Q17151/1-219 96.0% 15.6% VKLSAEM---------DEFKVDYSPVSKVSVS------------QQSLKPDTGVKFQWKSD 13 Q93796/1-243 93.4% 13.6% AELGASL-------CQVDTVNGFEDSEQEEGNVETTVAPTPDDDNSTLTTEETQKSYWGVD 14 Q17738/1-221 96.9% 14.9% LSSRISL--------EDSKNFDIVKIIMQAE--------------ERLKRLVRQNMLRSNK 15 Q05701/1-243 94.7% 10.6% VPLGPLGSVEFTLATLPLISNQYIELDINPIVKSIA-----GDVIDFPKPRLPVKMPPKED 16 Q05704/1-214 91.6% 14.6% VDSLVPL--------GILGSVQYTFSSLPLVT------------GEFLELDLNTLVGEAGG 17 Q61114/1-230 95.1% 12.5% TTXPIAL---SPGALEFWXSVSCYPGQKYPVE------------XEGQAXGLTGEGNQLVH consensus/100% h....................th......................t............... consensus/90% h.....h..............th......................t..t...t.......t consensus/80% hs.t.tl........t..hs.sh..ht...ht............tp.hp..hpsphh..sc consensus/70% hshphpl........p..hshshshht.stss............tphlc.phpschh.hsc