cov pid 1 [ . . . . : . . . 80 1 A54136/1-208 100.0% 100.0% EEHNKMVYFAISDYVFNTASLVYHEE--GYLNFSI-TDDMIPPDSN-IRLTTK---------SFRPFVPRLARLYPNM-N 2 LBP_MOUSE/1-208 100.0% 64.2% EDSKQMVYFAISDHAFNIASRVYHQA--GYLNFSI-TDDMLPHDSG-IRLNTK---------AFRPFTPQIYKKYPDM-K 3 179529/1-208 100.0% 41.7% AAHDRMVYLGLSDYFFNTAGLVYQEA--GVLKMTL-RDDMIPKESK-FRLTTK---------FFGTFLPEVAKKFPNM-K 4 BPI_BOVIN/1-208 100.0% 39.2% SDHDRMVYLGISEYFFNTAGFVYQKA--GALNLTL-RDDMIPKESK-FRLTTK---------FFGILIPQVAKMFPDM-Q 5 CETP_HUMAN/1-20 97.5% 17.1% LGDSRMLYFWFSERVFHSLAKVAFQD--GRLMLSL-MGDEFKAVLE-TWGFNT---------NQEIFQ-EVVGGFPS--Q 6 PLTP_HUMAN/1-20 99.5% 20.1% QEEERMVYVAFSEFFFDSAMESYFRA--GALQLLL-VGDKVPHDLD-MLLRAT---------YFGSIV-LLSPAVIDS-P 7 BPI_RABIT/1-208 100.0% 44.1% SLHDRMIYLAISDYLFNTAALVYQQA--GAFGLTL-RDDMIPKESK-SRLTTK---------FLGKALPQVAKMFPNM-N 8 Q05704/1-201 99.0% 23.4% MGDNTNSQLAISANFLSSVLTMLQKQ--GALDIDI-TDGMFEDLP---PLTTS---------TLGALIPKVFQQYPESRP 9 Q05701/1-203 98.0% 23.9% EDHTSQVTVPL--YLFNTVFGLLQTN--GALDLDI-TPEMVPRN---IPLTTT---------DLAALAPEALGKLPPGQH 10 Q23366/1-219 99.5% 13.8% PLSDHMAHFYVSDHLLNSMLYQAYQD--NRLALKI-DESNLPNEMKSFVSTQCPTKKHQTYVCVGYLIPEIRHLYPDS-T 11 Q17654/1-197 93.6% 14.2% PRSTRMIDMFIDEHTVQSIIAAAHFA--GHLKTKI-ESP--------FLKTSCD------VLCIGTVLPELAEQVPNR-T 12 Q18869/1-211 97.5% 18.4% TNKDSMIELVVSDFLPNSLLYHAYVQ--RFIKVLL-TPRTKGVSS--FLRTTCE-----GSFCISDLAPQLAEQYPNS-T 13 O42273/1-200 95.1% 17.5% STSTSHLILALSEHFYTSLYFTLERA--GAFNMTI-PS---------MLTTAT---------LAQKIT-QVGSLYHEDLP 14 Q17743/1-215 99.5% 18.9% ADSGHMIDFYLSNYTMSSLLFWMDQY--RKFDYEISRQATNNSALVGYLKTDCGT----GDICAGTLFPALGTRFPGG-E 15 Q17738/1-211 97.5% 16.5% PNPSQMLQIVVSDFVPNSLMFHGHRI---KLFDTR-IDWMTPQFGP-VMRTTCDLS-TGSLFCIGDLFPALREMLPDR-N 16 Q93796/1-228 99.0% 15.9% RLDKKMVGILLSEYIPNTLFHHIYMYDLGNFKHRY-TPSSLPKILQ-KLSKAV---------CSKCYV-EVSANLTE--Q consensus/100% ...tp...h.h...h.p.h...h.......h...h................t............t.h...h...h..... consensus/90% ..ppp.h.hhhsthh.poh.h.h.....thh.h.h...............psp...........t.hh.tl.t.h.t... consensus/80% .tpspMl.hhlS-ahhsohhhhh.pt..shhthpl.hst.h......hhhssp.........hht.hh.plht.hPs..p consensus/70% .tpspMl.hhlS-ahhsohhhhh.pt..Gtlphpl.pss.hst....hhhTsp.........hht.hhPpltphhPs..p cov pid 81 . 1 . . . . : . 160 1 A54136/1-208 100.0% 100.0% LELQGSVPSAPLLNFSPGNLSVDP---------YMEIDAFVLLPSS-----SKEPVFRLSVATNVSA-TLTFNTSKITGF 2 LBP_MOUSE/1-208 100.0% 64.2% LELLRTVVSAPILNVSPGNLSLAP---------QMEIEGFVILPTS-----AREPVFRLSVVTNVFA-SLTFNTRKVTGM 3 179529/1-208 100.0% 41.7% IQIHVSASTPPHLSVQPTGLTFYP---------AVDVQAFAVLPNS-----SLASLFLIGMHTTGSM-EVSAESNRLVGE 4 BPI_BOVIN/1-208 100.0% 39.2% MQLFIWASLPPKLTMKPSSLDLIF---------VLDTQAFAILPNS-----SLDPLFLLEMNLNLSV-VVGAKSDRLIGE 5 CETP_HUMAN/1-20 97.5% 17.1% AQVTVHCLKMPKISCQNKGVVVNS---------SVMVKFLFPRPDQ---QHSVAYTFEEDIVTTVQA--SYSKKKLFLSL 6 PLTP_HUMAN/1-20 99.5% 20.1% LKLELRVLAPPRCTIKPSGTTISV---------TASVTIALVPPDQ-----PEVQLSSMTMDARLSA-KMALRGKALRTQ 7 BPI_RABIT/1-208 100.0% 44.1% VQLTLSVSSPPHLTTRPTGIALTA---------AVDLQAFAILPNS-----SLASLFLLGLKLNTSA-KIGTKADKLVGE 8 Q05704/1-201 99.0% 23.4% LTIRIQVPNPPTVTLQKDKALVKV---------FATSEVVVSQPND-----VETTICLIDVDTDLLA-SFSVEGDKLMID 9 Q05701/1-203 98.0% 23.9% LLLSLRVMKSPMILLQNKKVTVSI---------PVTIHVLSSVPQG-----TPVALFQMNGVMTLNA-HLVPSTTKLHIS 10 Q23366/1-219 99.5% 13.8% VSFAILPHGLPYVMFNRDGMTVDI---------KNRILTYAIPDDPAH-LNNRSQILVFSINGQADI-TFAPTTESLNAH 11 Q17654/1-197 93.6% 14.2% LSVEAATLSPPVIDLQQGRALVYL---------NASLNVFAAPPLK----TVEGSMLTINVETEFTL-TMEMRNKRVKGY 12 Q18869/1-211 97.5% 18.4% VELAMSATRAPAVLFSEKNGGTISVSL------GGLVVVFAVNGNQ------RRQVIVVDLDVVADA-RLSIQGHNVSGS 13 O42273/1-200 95.1% 17.5% ITLSAALRSSPRVVLEEGRAALKL---------FLTVHIGAGSPDF----QSFLSVSADVTRAGLQL--SVSDTRMMIST 14 Q17743/1-215 99.5% 18.9% VVIKSHTVSYPRVVLRKNNMTIYI---------DSRVDAFVQQQDR-----SRRFL-TASMNAEVKLDKPSFKDFVLHGE 15 Q17738/1-211 97.5% 16.5% VAFLFTTLRAPAVIMQPEEKGGI----------HFSLRGLIRLVSD-----RNEPIGEMEIRIEALM-KMKLTSKSVKGK 16 Q93796/1-228 99.0% 15.9% PILQIDAHLGARVQLSGNVSIMFHGREQLHDVLHANTKLHVTLKPTVRHSRIFGDVSLTNVDVNVFD-VSCIQEKLILKN consensus/100% ..h.......shh.hp.t...h................hh...............h....h.h.h.......pt..h... consensus/90% h.h.h.s...Phl.hp.tth.h..............h.hhh..............h...th.hth.h.....ptp.h... consensus/80% ltlthts.tsPhl.hp.tthsh............hplphhs..ssp.....s.t.l..hshthph.h...s.psphlhs. consensus/70% lplthps.psPhl.hp.sthsl............hplpshsh.ssp.....s.t.lhhhshpsphph.phshpsctlhup cov pid 161 . . . 2 . . . . 240 1 A54136/1-208 100.0% 100.0% LKPGKVKVEL----KESKVGLFNAELLEALLN-YYILNTFYPKF-----NDKLAEGFPLPLL-KRVQLYDLG---LQIHK 2 LBP_MOUSE/1-208 100.0% 64.2% LHPDKAQVRL----IESKVGIFNVNLFQAFLN-YYLLNSLYPDV-----NAELAQGFPLPLP-RHIQLHDLD---FQIRK 3 179529/1-208 100.0% 41.7% LKLDRLLLEL----KHSNIGPFPVELLQDIMN-YIVPILVLPRV-----NEKLQKGFPLPTP-ARVQLYNVV---LQPHQ 4 BPI_BOVIN/1-208 100.0% 39.2% LRLDKLLLEL----KHSDIGPFSVESLQSVIN-YVMPTIVLPVI-----NKKLQKGFPLPLP-AYIELFNLT---LQPYQ 5 CETP_HUMAN/1-20 97.5% 17.1% LDFQITPKTV------SNLTESSSESIQSFLQ-SMITAVGIPEV-----MSRLEVVFTALMNSKGVSLFDIINPEIITRD 6 PLTP_HUMAN/1-20 99.5% 20.1% LDLRRFRIYS----NHSALESLALIPLQAPLK-TMLQIGVMPML-----NERTWRGVQIPLP-EGINFVHEV---VTNHA 7 BPI_RABIT/1-208 100.0% 44.1% LTLGRLILEL----KHSNIGSFPVQLLQALMD-YVLSAVVLPKV-----NEKLQRGLPLPMP-RKVQLYDLV---LQPHQ 8 Q05704/1-201 99.0% 23.4% AKLDKTSLNL----RTSNVGNFDVFILEMLVE-KIFDLAFMPAM-----NAILGSGVPLPKI-LNIDFSNAD---IDVLE 9 Q05701/1-203 98.0% 23.9% LSLERLTVQL----ASSFSQPFDASRLEEWLS-DVVRAAYMQKL-----NEHLEVGIPLPKI-LNVNFANSV---VDVIE 10 Q23366/1-219 99.5% 13.8% MNLNRFNVRL----HRSAVRGIDESSIARLS--PLSKTFIAPRL-----SSAVEKAVRFPMQ-DTIKFINPV---IKNYD 11 Q17654/1-197 93.6% 14.2% INMINAQANLVDSKTVDFLVNMSTPFLEDAVD-VLIGRGLI-----------VADPFQFPST-NEHLSIHDK---CLRWE 12 Q18869/1-211 97.5% 18.4% VELRKFDLKR----RTGTVDISDAEIDDIALLVSQLSENLL--------NGLLVNGMPIPLP-HVLRIKDSH---INVLS 13 O42273/1-200 95.1% 17.5% AVIEDAELSL----AASNVGLVRAALLEELFL-APVCQQVPAWM-----DDVLREGVHLPHM-SHFTYTDVN---VVVHK 14 Q17743/1-215 99.5% 18.9% LRIDKFKVSD----VASLVDGIDEGSLEFLVN-ALTELILNEDM-----AKKLKSGIQLPIM-FDYTQQAAN---VSIED 15 Q17738/1-211 97.5% 16.5% VTIEEIQFTS------RSPRILLQEELDDAG--FLSREILQRMV-----NDILRQGIPIPIH-PLFKLVKPK---LTLLS 16 Q93796/1-228 99.0% 15.9% FSCINLKVEQ---KFQLGLGGPLAAPIEKLFS-FVVPRVLWPQVKKRLRFAMNRRGVKLPIF-CGVELEHTE---LDFVD consensus/100% h....h.h...................t...........h...............sh.h......h...t.....h...t consensus/90% hp..ph.hp.......t..t......hp.hh........h..........t.h..sh.hPh....hp..p.....h..hp consensus/80% hphtch.lp.....htutlt.hs.t.lpthh...hh..hhh..h.....sthltpGh.lPh...thphhp.....lp.hp consensus/70% lphpchplph....htStls.hsst.lpthhp.hhh.thlh..h.....sthLtpGh.lPh..ttlphhs.....lp.hp cov pid 241 ] 247 1 A54136/1-208 100.0% 100.0% DFLFLGA 2 LBP_MOUSE/1-208 100.0% 64.2% DFLYLGA 3 179529/1-208 100.0% 41.7% NFLLFGA 4 BPI_BOVIN/1-208 100.0% 39.2% DFLLFGA 5 CETP_HUMAN/1-20 97.5% 17.1% GFLLLQM 6 PLTP_HUMAN/1-20 99.5% 20.1% GFLTIGA 7 BPI_RABIT/1-208 100.0% 44.1% DFLLLGA 8 Q05704/1-201 99.0% 23.4% DLLVLST 9 Q05701/1-203 98.0% 23.9% NAVVLTV 10 Q23366/1-219 99.5% 13.8% GFICLST 11 Q17654/1-197 93.6% 14.2% ADIVMPT 12 Q18869/1-211 97.5% 18.4% RRMHIQV 13 O42273/1-200 95.1% 17.5% DYVLVPC 14 Q17743/1-215 99.5% 18.9% DMLHISA 15 Q17738/1-211 97.5% 16.5% RSMLLET 16 Q93796/1-228 99.0% 15.9% HAVLLNT consensus/100% t.hhh.h consensus/90% t.hhh.s consensus/80% shlhlss consensus/70% shlhlss