cov pid 1 [ . . . . : . . . 80 1 Q38679/1-109 100.0% 100.0% RNVLVNNEGLYAGQSLV--------EEQYTFIMQ--------DDCNLVLYEYS--------TPIWAS----NTGITGKNG 2 Q38787/1-109 99.1% 71.8% RNLLTNGEGLYAGQSLN--------VEPYHFIMQ--------EDCNLVLYDHS--------TAVWAT----NTDIPGKK- 3 Q38724/1-109 99.1% 62.7% RNILGNEQALYADQSLD--------EGPYKLIMQ--------KDCNLVLFEHN--------TVRWAT----KTGSLGHY- 4 P92932/2-0 99.1% 56.9% RSVLKSGEQLSSEQFLN--------TQQFKLIAQ--------EDCNLVLYEYN--------IVIWAS----NTVVGAHAG 5 P92932/1-113 100.0% 50.4% RNVLTTGETLHAGEHLD--------IGQYTLSMR--------YDCNLVLYENS--------NPLWAS----NTQYEENVV 6 LEC_ALOAR/1-10 99.1% 52.7% DNILYSSEVLHENQYIS--------YGPYEFIMQ--------HDCNLVLYESG--------NPTWAS----NTGGLALH- 7 O24274/1-108 99.1% 43.1% DNSLTSPNSLPSGHSLN--------TGSYRLIMQ--------ADCNLVVYDSG--------KPVWAT----NTGGLARD- 8 LEC_GALNI/1-10 99.1% 53.2% DNILYSGETLSTGEFLN--------YGSFVFIMQ--------EDCNLVLYDVD--------KPIWAT----NTGGLSRS- 9 Q39728/1-108 99.1% 55.0% DNHLLTGQRLTTGSFLT--------EGGFTFIMQ--------SDCNLVLYDLN--------RPIWAS----GTYGKGTG- 10 Q39729/1-110 98.2% 45.5% ADRLNAGQSLGTGGSLA--------LGGYIFKIQ--------ADCNLVLYDNN--------RAVWAS----GTNGRATD- 11 Q40231/1-109 99.1% 53.6% SNTLGGGERLNSGESLT--------EGACVFIMQ--------EDCNLVLYESS--------RPTWAS----GSYHQGSG- 12 Q39512/1-108 99.1% 48.6% NNHLLSGERLNPGQSLT--------SGNVDLAMQ--------YDCNLVLYDNG--------KSIWSS----GTYGSGSG- 13 Q41624/1-108 99.1% 57.8% NNVLYTGESLYGGQSLT--------WESYTFIMQ--------TDCNLVLYEGN--------GPIWAS----GSNDLGSG- 14 CURC_CURLA/1-1 99.1% 44.0% DNVLLSGQTLHADHSLQ--------AGAYTLTIQ--------NKCNLVKYQNG--------RQIWAS----NTDRRGSG- 15 Q39487/1-105 96.3% 28.4% TNYLLSGQTLETEGHLK--------NGDFDLVMQ--------DDCNLVLYNGN-----------WQS----NTANKGRD- 16 Q41622/1-110 96.3% 35.1% QNVLLSGNTLANEESLS--------YGSVKFIMQ--------NDCNLVLYGGG-----------FQS----NTASNGKK- 17 Q39487/2-0 98.2% 32.1% NNLLFSGQVLYGDGRLT--------AKNHQLVMQ--------GDCNLVLYGGK---------YGWQS----NTHGNGEH- 18 SLS0_BRAOA/1-1 95.4% 11.9% ALTISSNKTLVSPGDVFE-------LGFFKTTTRNSPDG-TDRWYLGIWYKTTSG----HRTYVWVA----NRDNALH-- 19 Q39275/1-130 95.4% 12.6% ALTISSNKTLVSPGDVFE-------LGFFKTATKNSQDGSTDRWYLGIWYKTTSD----QRTYVWVA----NRDNPLH-- 20 Q41272/1-126 95.4% 13.0% TLTISSNRTIVSPGNIFE-------LGFFKTTTSSRNG---DHWYLGIWYKSIS-----ERTYVWVA----NRDNPLS-- 21 SLS2_BRAOA/1-1 95.4% 12.5% SLKISNSRTLVSPGNVLE-------LGFFRTPSS-------SRWYLGMWYKKLS-----ERTYVWVA----NRDNPLS-- 22 O23846/1-124 95.4% 13.2% SLTISSNRTLVSRGNVFE-------LGFFRTNSS-------SRWYLGIWYKKVS-----DRTYVWVA----NRDNPLS-- 23 Q39393/1-126 95.4% 12.2% TLTISSNRTLVSPGDVFE-------LGFFKTTSS-------SRWYLGIWYKKLYFGS--IKNYVWVA----NRDSPLF-- 24 Q39390/1-121 95.4% 10.3% SLTISSNRTLVSPGGAFE-------LGFFKPSAL-------PRWYLGIRYKKVS-----EKTYAWVA----NRDNPLS-- 25 O48512/1-121 96.3% 15.2% SLTISNNKTIVSRNETFE-------LGFFTPGSS-------SRWYLGIWYKKIP-----TRTYVWVA----NRDNPLS-- 26 O23744/1-123 95.4% 12.5% SLTVGSNETIVSSGEIFE-------LGFFNLPSS-------SRWYLGIWYKKIP-----ARAYVWVA----NRDNPLS-- 27 G3176715/1-124 97.2% 12.6% DFTLSGDQTIVSSDGTYE-------MGFFKPGSS-------SNFYIGMWYKQLS------QTILWVA----NRDKAVSD- 28 Q40096/1-122 97.2% 16.8% TQPLAGNRTLVSSDGLFE-------LGFFTPNGS-------DQSYVGIWYKEIE-----PKTVVWVG----NRDGASRG- 29 Q40099/1-126 98.2% 14.8% TQPLTQNQTLVSAGGVFQ-------LGFFSPGGNSG------GLYVGIWYKEIQ-----DRTIVWVA----NRDKPLRNN 30 Q40101/1-124 98.2% 17.5% THPLAVDQTLVSSNALFE-------LGFFTPENS-------GRWYVGIWYKDIE-----EKTVVWVA----NRNSPLTNS 31 Q40100/1-126 96.3% 14.2% VKDGEGKTTIVSSNGTFE-------LGFFSPGKSEN-------RYVGIWYKNIS-----VTTVVWVA----NRETPLNT- 32 G3056580/1-119 96.3% 9.8% ESPLSVEQTLSSSNGIYE-------LGFFSPNNSQN-------LYVGIWFKGII-----PRVVVWVA----NRETPTTD- 33 G3056594/1-119 96.3% 9.8% SSPLSIGVTLSSPGGSYE-------LGFFSSNNSGN-------QYVGIWFKKVT-----PRVIVWVA----NREKPVSS- 34 KPRO_MAIZE/1-1 96.3% 18.0% YESSTLQSSDGTFSSGF--------YEVYTHAFTF------SVWYSKTEAAAANNK-----TIVWSANP--DRPVHAR-- 35 Q39688/1-118 96.3% 17.2% SEYFGDYRPLDPFTSPFQ-------LCFYNQTPTAF----TLALRMGLRRTES------LMRWVWEA----NRGNPVDE- 36 Q39436/1-124 96.3% 17.5% VEYDGNYRALDVFNSPFQ-------LCFYNTTPNSY----TLALRMCLVRSES------LFRWVWEVRHEANRGNPVGE- 37 Q41622/2-0 94.5% 20.5% QNLLFSGQTLYGTDGMLS-----SNDGSTTFELS--------KCQLSLSLGN---------EVKWKVAP---TVENGKE- 38 O04384/1-124 96.3% 14.4% LRDGSTHKPLVSPQKTFE-------LGFFSPGSSPG-------RYLGIWYGNIED-----KAVVWVA----NRENPISD- 39 G3176659/1-127 95.4% 11.4% GQFLKDGQELVSAFKIFK-------LKFFNFKNSEN-------LYLGIWFNNLYLNTDSQDRPVWIA----NRNNPISD- 40 O24273/1-115 99.1% 32.8% TNVLYSDVGNAILNAKES-----LIYGDYRLDMQ--------SDCNLVLYNKA--------APYWASG---TRWSWGGN- 41 Q39203/1-118 95.4% 10.6% KVIIKGNQTILSFKAIFR-------LGFFSTTNGSS------NWYLGISYASMP-----TPTHVWVA----NRIRPVSD- 42 COMI_DICDI/1-1 98.2% 27.4% MELLRQGEHLHSTSRSTLE----SKCRKYKLIMQ--------NDGNLVLYIGSLKSQS-DEYCLWSS----ASCGKGHG- 43 P93756/1-123 97.2% 11.9% KLVVGENTLWVSNNGDFA-------LGFFNPPGLLN------RFSIGIWFNSNSIPYD-QRKVVWVA----GAGVVVSD- 44 Q39202/1-127 96.3% 12.2% SLTASESQQISSSWRSPS---GDFAFGFRKIQPND-------GFTLSIWFDKIS-----DKTIVWHAQAVNTTTGLVPNG 45 O49361/1-113 95.4% 18.8% NYINNDGIFLESNNSAFG-------FGFVTTQDSVT------LFTLSIIHKSST-------KLIWSA----NRASPVSN- 46 G3047096/1-122 97.2% 14.0% FVDSSKGAFLLSRNSIFK-------AGLFSPGGDDS----STGFYFSVVHVDSG-------STIWSS----NRDSPVSS- 47 O24273/2-0 97.2% 21.1% DSTLWSGDVATIGPT--------IANGDYKLELL--------DTCNLTLSNTKTG------QVLWYT----NTTDWVHD- 48 O49974/1-136 99.1% 15.3% TDTLRQGESLSGAATLVSSPEGVFEAGFFAPDPKQP-----SRQYLGIWYHSIS-----PRTVVWVA----NRVAPATS- 49 P73139/1-120 97.2% 21.3% GYEYSLPSSPFGYVLSFD----LVYGNDFELVSA---------WLQLISPTGQ---------VIWRS----NPGEGVTVT consensus/100% ..........................t.h..................h................a.s............. consensus/90% ...h..tp.h.s.t............t.hp...t..........h.hlhhtt...........hW.s....sp...ht.. consensus/80% t..l.ssptl.s.tth.........hs.ap...p..........h.hlhapt.........t.lW.u....sptt.hp.. consensus/70% s.hltsspsLhustshh........hG.aph..p........t.h.hlhYpp.........phlWsu....Npss.hpt. cov pid 81 . 1 . . . . : . 160 1 Q38679/1-109 100.0% 100.0% ---CRAVMQPDGNFVVYNVK-------GRAVWASNSR----RGNGNYILVLQKD---RNVVIYGSD--------IWSTGT 2 Q38787/1-109 99.1% 71.8% --ECRAVLQSDGNFVVYDAD-------GRPLWASHSV----RGNGNYVLVLQED---GNVVIYGSD--------IWSTGT 3 Q38724/1-109 99.1% 62.7% --ECYALMQSDGNFVVHNRN-------GAIVWASNSR----RGNGEYVLVLREN---GNVVIYGSD--------IWSTGT 4 P92932/2-0 99.1% 56.9% ---CRAAMQVDGNFVIYFN--------LHAIWSSHTD----RENGNYVLVLQQD---GNVVIYGPD--------VWSTGT 5 P92932/1-113 100.0% 50.4% ---CQVVLRKDGILVVSYVGSE----ADYPVWWSSNDR---LDSGNYALVLHED---GNLVIYGTD--------IWSTGT 6 LEC_ALOAR/1-10 99.1% 52.7% ---CRATLQTDGNLVVQNSA-------NRIIWQSNTGT---GTNGDYLLVLQKN---GNVVIVGPP--------IWATGT 7 O24274/1-108 99.1% 43.1% ---CRLTMHNNGNLVIYDRS-------NSVIWQTNTN----EKEDHYVLVLQQD---RNVVIYGPA--------VWATGS 8 LEC_GALNI/1-10 99.1% 53.2% ---CFLSMQTDGNLVVYNPS-------NKPIWASNTG----GQNGNYVCILQKD---RNVVIYGTD--------RWATGT 9 Q39728/1-108 99.1% 55.0% ---CFLSMQSDGNLVVYDVR-------NIAIWASNTA----RNNGNYLLILQKD---RNVVIYSQP--------IWATTT 10 Q39729/1-110 98.2% 45.5% ---CILSMQRDGNLVIYSG--------SRVIWASNTN----RQSGNYYLILQRD---RNVVIYDNS-----NNAIWATGT 11 Q40231/1-109 99.1% 53.6% ---CYVTLQNDGNLVVYNNR-------NRAVWASDTVR---ENIGNVILILQKD---HNVVLYSLP--------IWATGT 12 Q39512/1-108 99.1% 48.6% ---CYVTLQTDGNLVIYDNT-------NNPLWASNTS----GENGNYILILQKD---RNLVIYSHP--------IWATGT 13 Q41624/1-108 99.1% 57.8% ---CYVTMQKDGNLVIYSKS-------GNSVWASQTH----QAEGNYVLVLQKD---RNVVIYGPS--------LWATNT 14 CURC_CURLA/1-1 99.1% 44.0% ---CRLTLLSDGNLVIYDHN-------NNDVWGSACW----GDNGKYALVLQKD---GRFVIYGPV--------LWSLGP 15 Q39487/1-105 96.3% 28.4% ---CKLTLTDHGELVINNGD-------GSTVWRSGAQ----SVKGDYAAVVHPE---GRLVVFSPS--------VFKIDP 16 Q41622/1-110 96.3% 35.1% ---CTLTLNNNGHLIINDGLT------GRVVWRNSNAQ---NPVGRYAAVLRPAPGTADVAIYGPA--------IWSTND 17 Q39487/2-0 98.2% 32.1% ---CFLRLNHKGELIIEDDD-------FKTIWSSSYS----SKQGDYVLILRDD---GVAVIYGPA--------IWETSP 18 SLS0_BRAOA/1-1 95.4% 11.9% NSMGTLKIS-HASLVLLD-------HSNTPVWSTNFTG---VAHLPVTAELLAN---GNFVLRDSKT-NDLDRFMWQSFD 19 Q39275/1-130 95.4% 12.6% NSIGTLKIS-HASLVLLD-------QSDTTVWSTNLTG---VAHLPVTAELLAN---GNFVLRDSKT-NDLDRFMWQTFD 20 Q41272/1-126 95.4% 13.0% KSIGTLKIS-YANLVLLD-------HSGTLVWSTNLTR---TVKSPVVAELLDN---GNFVLRDSKG-NYQNRFLWQSFD 21 SLS2_BRAOA/1-1 95.4% 12.5% CSIGTLKIS-NMNLVLLD-------HSNKSLWSTNHTRG--NERSPVVAELLAN---GNFVLRDSNK-NDRSGFLWQSFD 22 O23846/1-124 95.4% 13.2% SSIGTLKIS-NMNLVLLG-------HSNKSVWSTNRTRG-KERSSPVVAELLAN---GNFVMRDSNN-NGASGFLWQSFD 23 Q39393/1-126 95.4% 12.2% NAIGTLKIS-NMNLVLLD-------QSNKSVWSTNLTRG--NERSPVVAELLAN---GNFVMRDSNN-KDASGFLWQSFD 24 Q39390/1-121 95.4% 10.3% TSIGTLKIS-GNNLHLLD-------QFNKTVWWTSLP----SRDAPVTAEVLPN---GNFVLRHSYN-DDPSEFLWQSFD 25 O48512/1-121 96.3% 15.2% RPSGSLKISSDNNLVIYD-------HSDTPVWSTNLTVG--ASRSPVVAELLDN---GNFVLNSND----PEGYLWQSFD 26 O23744/1-123 95.4% 12.5% NSNGTLRIS-DNNLVMFD-------QSGTPVWSTNRTRG--DAGSPLVAELLDN---GNFVLRHLNN-SDQDVFLWQSFD 27 G3176715/1-124 97.2% 12.6% KNSSVFKIS-NGNLILLDG------NYQTPVWSTGLNST--SSVSALEAVLQDD---GNLVLRTGGS-SLSANVLWQSFD 28 Q40096/1-122 97.2% 16.8% -SAGILKIGEDGNIHLVD-------GGGNFIWSPTNQ----SAARNTVAQLLDS---GNFVLRREDDENPE-NYLWQSFD 29 Q40099/1-126 98.2% 14.8% -STGFLKIGEDGNIHLVD-------QTENSIWSSSNSN--QSVPENTVAQLLDS---GNLVLRRENDENPE-NYLWQGFD 30 Q40101/1-124 98.2% 17.5% TGRGVLRIGDDGNIYLVD-------GDGNSIWGSSST----TRPGTTVAELLDS---GNFVLRRENDRTEE-NYLWQSFD 31 Q40100/1-126 96.3% 14.2% -TSGILKIIKPGILVLLN-------EDNATIWSTNTS----RSVQNPIAQLLDS---GNLVIKDAGDGNEEKNFLWQSFD 32 G3056580/1-119 96.3% 9.8% -TSANLAISSNGSLLLFN-------GKHGVVWSIGEN----FASNGSRAELTDN---GNLVVIDNA----SGRTLWESFE 33 G3056594/1-119 96.3% 9.8% -TMANLTISSNGSLILLD-------SKKDLVWSSGGD----PTSNKCRAELLDT---GNLVVVDNV----TGNYLWQSFE 34 KPRO_MAIZE/1-1 96.3% 18.0% --RSALTLQKDGNMVLTD-------YDGAAVWRADGN----NFTGVQRARLLDT---GNLVIEDSG-----GNTVWQSFD 35 Q39688/1-118 96.3% 17.2% --NATLTFGPDGNLVLAR-------SNGQVAWQTSTA-----NKGVVGLKILPN---GNMVLYDSK-----GKFLWQSFD 36 Q39436/1-124 96.3% 17.5% --NATFSLGTDGNLVLAD-------ADRRIAWQTNTT-----NKGVVGFKLLPN---GNMVLHDAK-----DKFIWQSFD 37 Q41622/2-0 94.5% 20.5% -NYCHVRLDHRGHLSLLN-------DDNVVLFRSIPTNGVEPPIGDYVLIVEK----GAGYIYGPP--------IWNTYD 38 O04384/1-124 96.3% 14.4% -RSGVLTISNDGNLVLLN-------GQNITVWSSNIT--STNNDNNRVGSILDT---GNFELIEVS----SERVIWESFN 39 G3176659/1-127 95.4% 11.4% -RSGSLTVDSLGRLKILR-------GASTMLELSSIE-----TTRNTTLQLLDS---GNLQLQEMDADGSMKRVLWQSFD 40 O24273/1-115 99.1% 32.8% ---CHLNLQSNGELVMYAYLG----RTRIAIWRSGII----SATGSYALVLKYD---GALHVHGPS--------LWSTNA 41 Q39203/1-118 95.4% 10.6% PDSSTLELTSTGYLIVSN-------LRDGVVWQTDNK------QPGTDFRFSET---GNLILINDD-----GSPVWQSFD 42 COMI_DICDI/1-1 98.2% 27.4% --PYRLSMQEDGNLVIYDS-------RNSAIWASGTMG--HGVRGHYSMKLRSS---GQIVVYDKY--------KQILYS 43 P93756/1-123 97.2% 11.9% -NSSYFELTRNGELVLFDS------LLGVPVWNSKTN-----RFSVSSALLRDD---GNLVLLKDR-----EEIVWQSFG 44 Q39202/1-127 96.3% 12.2% ---SKVTLTADGGLVIAD-------PRGQELWRALSG------GSVSRGRFTDD---GNFVLFRDGS-EDSDEVLWSSFE 45 O49361/1-113 95.4% 18.8% --SDKFVFDDNGNVVME----------GTEVWRLDNS-----GKNASRIELRDS---GNLVVVSVD-----GTSIWESFD 46 G3047096/1-122 97.2% 14.0% --SGTMNLTPQGISVIEDG------KSQIPVWSTPVL-----ASPVKSLRLTDA---GNLLLLDHL-----NVSLWESFD 47 O24273/2-0 97.2% 21.1% ---CYVNIEGNGELKIKYLG-------GATLWSNKVG---AGYTNNYVLGLRPD---GKLDTYNAP--------IWSPTI 48 O49974/1-136 99.1% 15.3% -ASPSLTLTVTGDLRVLDGTAANGTADAPLLWSSNTTSR-AGPRGGYSAVLQDT---GSLEVRSED------GVLWDSFW 49 P73139/1-120 97.2% 21.3% -PEAYAIMQSDGNFVIYGQPGG---NSGDVIWSSNTA-----GNSGAVLKLASD---GGLYIVDSE-----GNIVPNGTL consensus/100% .....h.h.......h..............h.................h.h......t.h.h.t..........h..... consensus/90% ...s.h.ht.psthhl.t.........t..lWtst.........t...h.l..s...tshhlht..........lWts.. consensus/80% ...shhphp.sGplllhs.........st.lWtos.t......tsshhh.L.ts...Gshllhs..........lWpohs consensus/70% ...shlplptsGsLVlhs.........spslWtosts.....tpushsh.L.ps...GNhVlhsss........lWpohs cov pid 161 ] 162 1 Q38679/1-109 100.0% 100.0% YR 2 Q38787/1-109 99.1% 71.8% YV 3 Q38724/1-109 99.1% 62.7% HI 4 P92932/2-0 99.1% 56.9% HV 5 P92932/1-113 100.0% 50.4% AK 6 LEC_ALOAR/1-10 99.1% 52.7% GR 7 O24274/1-108 99.1% 43.1% GP 8 LEC_GALNI/1-10 99.1% 53.2% HT 9 Q39728/1-108 99.1% 55.0% NI 10 Q39729/1-110 98.2% 45.5% NV 11 Q40231/1-109 99.1% 53.6% NR 12 Q39512/1-108 99.1% 48.6% NH 13 Q41624/1-108 99.1% 57.8% DQ 14 CURC_CURLA/1-1 99.1% 44.0% NG 15 Q39487/1-105 96.3% 28.4% SV 16 Q41622/1-110 96.3% 35.1% EF 17 Q39487/2-0 98.2% 32.1% QA 18 SLS0_BRAOA/1-1 95.4% 11.9% YP 19 Q39275/1-130 95.4% 12.6% YP 20 Q41272/1-126 95.4% 13.0% YP 21 SLS2_BRAOA/1-1 95.4% 12.5% YP 22 O23846/1-124 95.4% 13.2% YP 23 Q39393/1-126 95.4% 12.2% YP 24 Q39390/1-121 95.4% 10.3% FP 25 O48512/1-121 96.3% 15.2% FP 26 O23744/1-123 95.4% 12.5% FL 27 G3176715/1-124 97.2% 12.6% HP 28 Q40096/1-122 97.2% 16.8% YP 29 Q40099/1-126 98.2% 14.8% YP 30 Q40101/1-124 98.2% 17.5% YP 31 Q40100/1-126 96.3% 14.2% YP 32 G3056580/1-119 96.3% 9.8% HF 33 G3056594/1-119 96.3% 9.8% HL 34 KPRO_MAIZE/1-1 96.3% 18.0% SP 35 Q39688/1-118 96.3% 17.2% TP 36 Q39436/1-124 96.3% 17.5% YP 37 Q41622/2-0 94.5% 20.5% NR 38 O04384/1-124 96.3% 14.4% HP 39 G3176659/1-127 95.4% 11.4% YP 40 O24273/1-115 99.1% 32.8% TG 41 Q39203/1-118 95.4% 10.6% NP 42 COMI_DICDI/1-1 98.2% 27.4% SK 43 P93756/1-123 97.2% 11.9% TP 44 Q39202/1-127 96.3% 12.2% NP 45 O49361/1-113 95.4% 18.8% HP 46 G3047096/1-122 97.2% 14.0% FP 47 O24273/2-0 97.2% 21.1% GP 48 O49974/1-136 99.1% 15.3% HP 49 P73139/1-120 97.2% 21.3% NP consensus/100% .. consensus/90% .. consensus/80% .. consensus/70% .s