cov pid 1 [ . . . . : . . ] 73 1 CR954246_2405 100.0% 100.0% STDDVIDYLAKYF-CIDTHDIVTVKKGRKEKNLPRMFAI-KLCQDLTGQNLKALAVIFNVQHYSAISQTVCRL 2 Q749H2_GEOSL/22-0 97.2% 21.1% GLDMVVEVIKRLY-RLDEEELASPGQ-KRWAAEARGVAA-WAVQEFSSATLTDLAKRF-GRDVSSMSAAVRRL 3 CP000142_1769 97.2% 9.9% SLEELQRIIEDFF-RVKPGGLGQRGR-QDTISSARAVYC-FLAVAKLRYSGVEVGKRL-GICGSSVSRAARRG 4 Q74EK8 95.8% 9.9% SIESIVATIADQY-GVAPKAIASKSR-LPRTLDARAVVC-YTAVE-EGHTGAEVGRVL-GMTRSGVAIARRRG 5 CP000142_1763 97.2% 16.9% TLEILAEKVAEVF-GVTVEDIRQPGR-RNAVTDARSLIS-YLGFRRMGYSGEAVARIL-GITRSGVCRRSAAG 6 CP000142 97.2% 18.3% DLKELVQIVADKL-EVGSEDIRSGDK-RPKRVAARSILC-FWAVKELGCSTMEIAGLL-GITQSAVSRSVQRG 7 Q7D0D2_AGRT5/40-0 98.6% 9.9% LCRLVRQLTGEMV-QLTGDRFAARRDRRRIECHIRQIAM-YVCHVALGIPMSDIGPCF-GRDRTTVGHACQVV 8 Q8G1Y0_BRUSU/51-0 98.6% 18.3% LCEALIDLLAASF-GASGAEIRSPLRGRQEVSRIRQIGM-YVAHTSLGMAMNEVALGF-ARDRTTVMHACHTV 9 Q9A9D0_CAUCR/22-0 98.6% 15.5% TVGFVTHLVSLAT-GVPAVEIATPKRVSHTAVRARQLAI-YLTHITLHWPLARVAFAF-GRDRTTCGHACRKI 10 DNAA_MYCPN/352-0 97.2% 12.7% DPYLLIENVCRRF-NVPVDSVLSENR-KAELVRVRDVCN-YILREKYKMQFQQIGKIF-KRNHSTVVAAVKRV 11 Q8EX49_MYCPE/36-0 98.6% 9.9% NPDIIIESICLGY-GVDKKSVISKKR-NKQFSFVRKVCM-YVLREKINLSYNEIGSFFSNRNHATVLEAIKDV 12 DNAA_THEMA/343-0 97.2% 14.1% PIDELIEIVAKVT-GVPREEILSNSR-NVKALTARRIGM-YVAKNYLKSSLRTIAEKF-NRSHPVVVDSVKKV 13 CP000144_804 95.8% 14.1% RITEIIAEVAEAT-GWEPQEITSARV-FPGLVQARDLAC-FIARR-EGFSLTQIGNVL-RRDHSSIRSALQRE 14 Q5HXF5_CAMJR/34-0 98.6% 28.2% TIDDILSLVCKEF-NIKPSDVKSNKK-TQNIVTARRIVI-YLARALTALTMPQLANYFEMKDHTAISHNVKKI 15 DNAA_HELPJ/351-0 98.6% 16.9% SLENILLAVAQSL-NLKSSEIKVSSR-QKNVALARKLVV-YFARLYTPNPTLSLAQFLDLKDHSSISKMYSSV 16 DNAA_HELHP/359-0 98.6% 18.3% TLDNIIKVVSKEL-NIKPSEIVSKER-NRKVTFARRAVI-YLAHSLMINSMNIIAKELGMKDHSSVSKALKAI 17 DNAA_WOLSU/343-0 98.6% 19.7% TLENIIEVVSKEL-NVKPAEIKSKGR-SKNIANARRIVI-FLARTLTPNSMPSLAQFFGMKDHSSVSKAMKTV 18 DNAA_LEPIN/351-0 97.2% 22.5% SHDRIIEAVAKEF-NLNTAEIMGKSR-KKELIIPRHICF-YLLHNVFNVNKSQVGRLF-QTQHTTVIHGVRKT 19 Q7NC75_MYCGA/37-0 97.2% 12.7% DPKYVFDKIKYHF-NVSEDVLKSSKR-KKEIVQARHICM-YVLKNVYNKNLSQIGKLL-RKDHTTVRHGIDKV 20 DNAA_UREPA/366-0 98.6% 15.5% KPEQIIEIVAKEL-NIKTDLIKSSIR-KNNIVWARDIVC-YILKNKLNLTLTDIGKLLNGREHTTISHSISKV 21 DNAA_PORGI/381-0 98.6% 9.9% TIECIQQAVSRVF-QVQIEQMKSKSR-KQDIVQARQVVM-FLSKKHTAQSLSAIGELMGGRNHATVLHGCRCV 22 DNAA_BACFR/376-0 98.6% 16.9% TIDDIINVVCKHF-DLESSAIHTKSR-KREVVQARQVAM-YLAKTHTDFSTSKIGKFIGNKDHATVLHACKTV 23 CP000142_2240 93.0% 15.5% TPEQILDVTSEHF-GESPGAATVNSR-----SVARKVGI-YLAKKHTAATNRQIGELFGGMGYTAVAKTYQRV 24 Q7UWY5_RHOBA/48-0 98.6% 14.1% TLRSIEKAVCETF-GLEGDGLRGKAQ-TRRVSEPRTLAM-YLARQHTGSAFTEIAKHFGRRSHSNAISAISKV 25 DNAA_ONYPE/416-0 97.2% 18.3% VLEKIKSVVSNFF-NISVRDLMSKKR-QQKYTLPRHIAM-YLIKELKDIPYNIVGSFF-KRNHSAVFKAYQKI 26 DNAA_ACHLA/356-0 98.6% 21.1% NYDKIQSIVADYF-QVSLPDLIGKKR-HAKFTLPRHIAM-YLIKLKYNIPYKTIGSLFNDRDHSTVLSACEKV 27 Q98RK7_MYCPU/36-0 98.6% 16.9% TPERIIEHVANYY-KLPKHELISKSR-KSNLVVARDMAI-YLIREDLNYSFSRIGLIFSNRDHSTIFNSHRKI 28 Q602E9_MYCHY/36-0 98.6% 23.9% TPDLIIEVVSKYY-GVSILDIKSEKR-GKNIVHARDIAI-WLIKNILDLTHNSVGTFFNNRRHSTIISTLKKI 29 Q6KIT7_MYCMO/36-0 98.6% 21.1% NEDKIISIVTKYY-KISKSDLISKSR-IPNIVLARDITM-WLIRNVLELTFEKIGEIFNNRTHSAVITSINRI 30 Q92K64_RHIME/94-0 97.2% 13.7% PIEEIVAAVLEDFPGVSWDDIISVRR-ERRLVKPRHACMRAVYERRRDLSLAGIGRIF-HRDHTTVLAVVNDG 31 DNAA_BORGA/391-0 98.6% 15.5% NIENIKKILLREL-KIAHKDIEGHSK-KPEITKARHIYA-YLLRNFTELSTVEIGKIIGGKTHSTVLYSINKI 32 DNAA1_CHLMU/352-0 97.2% 16.9% TPSGIVRATAQYY-GVSPENILGRSQ-SREYVLPRQVAM-FLCRQKLSLSYVKIGEVF-SRDHSTVISSIRAI 33 DNAA1_PARUW/359-0 97.2% 22.5% TPQKIIQAVAEQY-GIRTEDILGKAQ-TRECALPRQLAM-HLCREQLKMPFMKIGDLF-SRDHSTVMSSVKSI 34 DNAA_MESFL/350-0 98.6% 9.9% NVKKIKEVVAKKY-DVTIKAIDGKAR-TTAIKNARHLSM-YFAKIILNHTSTQIGAEFGGRDHSTVLSAISRI 35 Q729U6_DESVH/39-0 97.2% 15.5% DFEGIVRMVCEGF-GLSPEQLNSRSR-KREYVVARNAAY-LLARKHTDLSLKEIGDRF-NRRHSTVLKGITAL 36 DNAA_AQUAE/304-0 98.6% 18.3% KLMQIVEFVANYY-AVKVEDILSDKR-NKRTSEARKIAM-YLCRKVCSASLIEIARAFKRKDHTTVIHAIRSV 37 DNAA_SPICI/357-0 98.6% 11.3% TPKKIKQIVADSY-NITIKAMMSKSR-VSNVMQARQLAM-YFCRTLLDEPFTRIGTEFGGKDHTTVMNSVKKV 38 DNAA_DESPS/387-0 97.2% 19.7% SSSLIRDLISAQF-QVSVEDLQSRSR-KKSISLPRQIAM-YLSRKFTEESLAEIGRTY-KRDHSTVIHSVKVI 39 Q72G59_DESVH/34-0 98.6% 25.4% APDTIISAAAEHF-GVTPRDILSDKR-QQHIVQARQVAM-FLCRELIGSSFPALGRMFGGKDHSTAMYAVKKI 40 DNAA_TROW8/386-0 97.2% 23.9% DPIEIIEITAKHY-DLAASDLCGNSR-VANISIARQIAM-YLCRELTDVSLPKLGYIF-GRDHSTIIYATRRI 41 Q607X3_METCA/24-0 93.0% 21.1% TVERVQAAVADHF-GIAPGDLLSNRH-----ALPLQLAM-ALCLELTDHGLEEVGPRFGGRDAAAVLLACREA 42 DNAA_GLOVI/346-0 98.6% 8.5% TDEAILELVCDEL-KVSAEDMRSDSR-RRDISQARQLCM-YLLRKYTDLSLPKIGQALGGKDHTTVLYAIDKI 43 DNAA_ANASP/360-0 98.6% 14.1% TPEAILTVIADNF-DISIEDLKSNSR-RREISWARQIGM-YLMRQHTDLSFPRIGEEFGGKDHTTVLYSCDKI 44 DNAA_SYNY3/348-0 98.6% 14.1% APETIITIVAQHY-QLKVEELLSNSR-RREVSLARQVGM-YLMRQHTDLSLPRIGEAFGGKDHTTVMYSCDKI 45 DNAA_SYNEL/354-0 98.6% 14.1% SPEIILKVVSEAL-NVPISDLKGNSR-RREISMARQVGM-YLMRQYTGLSLPKIGEEFGGKDHTTVMYSCDKV 46 Q5N4Y0_SYNP6/38-0 98.6% 16.9% SPEMILQTVAETF-DVSIEDLRGNSR-RREVSLARQVGM-YLMRQHTDLSLPKIGEQFGGKDHTTVMYSCEKI 47 DNAA_PROMM/367-0 98.6% 15.5% TPQQVIDKVSEVF-DVTPQDMRSSSR-RRAVSHARQVGM-YLMRQGTDLSLPRIGETFGGKDHTTVMYAIEQV 48 DNAA_PROMP/365-0 98.6% 15.5% TPKQVIKKVSDFF-EVSAEELVSSSR-RKPVSQARQIGM-YLMRQGTDLSLPKIGDEFGGKDHTTVMYAIEQV 49 DNAA2_PARUW/357-0 97.2% 21.1% SVEQILKSVAAVF-QVRVSDLRGSTR-TKDIALPRQVAM-YLAKEMINESLIMLGASF-GKTHSTILHACKNI 50 DNAA2_CHLTR/357-0 97.2% 19.7% SVESILKSVATVF-QVKIQDLKGSSR-AKNVPLARQVAM-YLAKTLITDSLVAIGAAF-GKTHSTVLYACKTI 51 DNAA_DEIRA/366-0 97.2% 19.7% EMTDVLRQVAAHY-GTTPDLIRGSGR-ARDIVVPRQVAQ-YLIRALTDHSLPEIGQFF-GRDHSTVMHAVSKI 52 DNAA_CHLTE/398-0 98.6% 22.5% TLETIEKAVCSYF-SITSNDLKGKSK-KKEIAVGRQIAM-YLSKDMTDSSLKTIGLHFGGRDHSTVIHALNTI 53 DNAA_BDEBA/375-0 98.6% 16.9% SVEEIMKLVADHF-KVRVLDLKSSTR-AKPIVVPRQIAM-YLIKKFLDKSLVDIGKSFGGKDHTTVMNALERV 54 DNAA_GEOSL/353-0 98.6% 25.4% TVEMIQKFVAEHF-SLKVADLKSDKR-LKALVIPRQIAI-FLCRDLTKSSYPEIGERFGGKDHSTIIHSVKKV 55 DNAA_THET8/345-0 98.6% 19.7% DPLEIIRKVADHF-GLKPEELTGSGR-KKEVVLPRQLAM-YLVRELTRASLPEIGQLFGGRDHTTVLYAIQKV 56 DNAA_TREPA/369-0 98.6% 21.1% TVETILHVVADHF-NISYSDLKGKKR-NKSVVYPRQIAM-FLSKELTELSTTELGIEFGGRDHSTVIYGCQKI 57 DNAA_TREDE/373-0 98.6% 25.4% TIDLIQRTVADYF-SISISDIKSKKR-TKSFSFPRQIAM-FLCREMTECSTTELGNDFGGRDHTTILHGCNKI 58 Q7UE51_RHOBA/32-0 98.6% 16.9% SIKAITTAVARQL-GVKSADMRSGSR-RQNIVRARSLAM-WLARRLTEDSLTQIGDAFGGRDHSTVLHAIRKI 59 DNAA_BUCBP/365-0 98.6% 15.5% TIKNIQKVVSNYY-HITIINLLSQCR-LKSIVKPRQIAM-AISKKLTNKSLSEIGREFNGRNHATVLYACKKI 60 DNAA_ACIAD/373-0 98.6% 19.7% SVENIQRVVSEYF-RIPLKELIGPKR-TRIYARPRQLAM-GLARELTGDSFPEIGMAFGGRDHSTVMHACEKV 61 Q5LWV4_SILPO/37-0 98.6% 22.5% TVEEIQRKVSDYY-NIRLSDIIGPKR-LRSYARPRQVAM-YLCKQLTSRSLPEIGRRFGGRDHTTVMHGVKRI 62 Q5FUU1_GLUOX/38-0 98.6% 16.9% TIEEIQRKVSEHW-NIRLTDMSSARR-ARAVARPRQVAM-YLAKQLTSRSLPEIGRKFGNRDHTTVMHAVNRV 63 DNAA_NEIMB/426-0 98.6% 23.9% TADIIIDAVAKYY-RIKISDVLGKKR-TRNIARPRQVAM-SLTKELTTLSLPSIGDSFGGRDHTTVMHGIRAV 64 DNAA_RHILO/396-0 98.6% 14.1% RIEDIQRIVARHY-NVSKTELLSNRR-TRTIVKPRQVAM-YLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKI 65 DNAA_RHOPA/380-0 98.6% 16.9% KIEDIQRIVARQY-NVSRSDLLSSRR-TANVVRPRQVAM-YLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKI 66 DNAA_RICTY/371-0 98.6% 18.3% TVEDIQKKVANRY-NIKLSDMYSSRR-LREVARPRQIAM-YLSKILTPKSLADIGKKFGKKDHTTVMHAIKKV 67 DNAA_CAUCR/398-0 98.6% 19.7% TIDDIQKATAEHY-GMKQADLLSERR-NRAVARPRQAAM-WLAKQLTTRSLPDIGRRFGGRDHTTVLHAVRRI 68 Q5PB48_ANAMM/38-0 98.6% 18.3% TVGMIQKKVAEFF-GIKLEDMYSARR-LRALARPRQVAM-YLAKRLTQKSLPDIGKSFGGRDHATVIHAVKQI 69 DNAA_ZYMMO/392-0 98.6% 14.1% TVEDIQKRVCDHY-HLKLADMSSKRR-DRVIARPRQVAM-YLSKQLTSRSLPEIGQRFGGRDHTTVIHAIRQI 70 DNAA_FRATT/399-0 98.6% 18.3% KIDNIQKVVADFY-RIRVKDLTSNQR-SRNIARPRQIAM-SLARELTSHSLPEIGNAFGGRDHTTVMHAVKAI 71 DNAA_METCA/350-0 98.6% 18.3% NVENIQKTVSEYF-KIRQADLLSNKR-TRSLTRPRQIAM-ALSKELTSHSLPEIGQMFGGRDHTTVLHACRKV 72 DNAA_BORPA/377-0 98.6% 18.3% TVENIQKTVADFY-KIKVADMYSKRR-PANIALPRQVAM-YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI 73 Q5P4P0_AZOSE/38-0 98.6% 21.1% TIEHIQKTVADYY-KIKVADMHSKKR-TRVIARPRQVAM-WLAKDLTPMSLPAIGEAFGGRDHTTVMHACRTI 74 DNAA_NITEU/367-0 98.6% 18.3% SIENIQKTVADYY-KIKVADMYSKKR-VRTIVRPRQVAM-AIAKELTQLSLPDIGEAFGGRDHTTVLHAHRKI 75 DNAA_MANSM/365-0 98.6% 16.9% TVENIQKMVAEYY-RIKVSDLKSKNR-SRSIARPRQLAM-ALAKELTNRSLPEIGKAFGDRDHTTVLHACRTI 76 DNAA_HAEDU/356-0 98.6% 16.9% TIENIQKIVAEYY-NIKMADLKSKSR-TRSIARPRQMAM-ALAKELTSHSLPEIGREFGGRDHTTVMHACKTI 77 Q5H715_XANOR/35-0 98.6% 15.5% GIPNIQKTVADYY-GLQMKDLLSKRR-TRSLARPRQVAM-ALAKELTEHSLPEIGDAFAGRDHTTVLHACRQI 78 DNAA_CHRVO/375-0 98.6% 19.7% TVDAIQKTVAEYY-KIKLSDMHSKKR-SRDIARPRQVAM-ALAKELTQLSLPNIGDAFGGRDHTTVLHACKTI 79 DNAA_BUCAI/362-0 98.6% 21.1% TIDNIQKTVAKYY-KIKVSDLLSKKR-SRSIARPRQMAM-AMAKKLTNHSLPEIGEAFSGRDHTTVLHACCKI 80 DNAA_SHEON/368-0 98.6% 19.7% TIDNIQKTVAEYY-KIKMADMLSKRR-SRSVARPRQVAM-ALSKELTNQSLPEIGDAFGGRDHTTVLHACRKI 81 DNAA_BIFLO/404-0 98.6% 23.9% KPTDIISQVAKYF-HLTFEDLVGKSR-TKNVAVPRQIAM-YLAREMTSMSLMDIGQVFGGRDHTTVMHACTRI 82 DNAA_MICLU/418-0 98.6% 11.3% TPELILHATGEYF-NLTLEELTSKSR-TRTLVTARQIAM-YLLRELTEMSLPKIGQVLGGRDHTTVIHADRKI 83 DNAA_LACLA/365-0 98.6% 25.4% TIKKIQDEVANYY-HISFSDLVGPKR-PKEIAFPRQIAM-YLVRELLGTSLPAIGTAFGGRDHTTVMYAYKQI 84 DNAA_STRPN/362-0 98.6% 12.7% PIDKIQTEVGNFY-GVSIKEMKGSRR-LQNIVLARQVAM-YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKI 85 DNAA_STRPY/360-0 98.6% 15.5% PIEEIQAQVGKFY-GVTVKEIKATKR-TQNIVLARQVAM-FLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKI 86 DNAA_ENTFA/355-0 98.6% 16.9% SILQIQEEVSKYY-HVPLKDLKGKKR-VKTIVVPRQISM-YLAREMTDNSLPKIGAEFGGKDHTTVIHAHEKI 87 DNAA_LACPL/363-0 98.6% 22.5% SIPVIQEKVAKYF-HVTMADLKGKKR-NKQIVIPRQIAM-YLSRELTESSLPRIGNEFGGKDHTTVIHAHDKI 88 Q5FN15_LACAC/36-0 98.6% 18.3% QIPKIQEVVANYF-QTSTAELKGKKR-VRQIVIPRQIAM-YLSRELTDASLPKIGQEFGGKDHTTVMHAYDKI 89 DNAA_SYMTH/365-0 98.6% 15.5% TIATIKQVVAEHY-NIRMQDFEVRNR-SRAVAYPRQIAM-YLARELTDSSLPKIGEEFGGRDHTTVIHACEKI 90 DNAA_STAEP/358-0 98.6% 18.3% TIQDIQKVVGQYY-SVRIEDFSAKKR-TKSIAYPRQIAM-YLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKI 91 DNAA_BACSK/359-0 98.6% 16.9% TITDIQKLVGEHF-QVKLEDFKAKKR-TKSVAFPRQIAM-YLSREMTDASLPKIGSEFGGRDHTTVIHAHEKI 92 DNAA_THETN/351-0 97.2% 19.7% TVKLIQEEVCKYY-NIKLEDFRSRKR-TKNIAYPRQIAM-YLARELTDLSLPKIGEEF-GKDHTTVIHAYEKI 93 Q899S5_CLOTE/24-0 98.6% 18.3% TIELIQDIVSSYF-NLRVEDFKSSRR-TRNVAFPRQIAM-YLCRKLTDNSLPKIGEEFGGRDHTTVIHGYEKI 94 DNAA_CLOPE/364-0 98.6% 15.5% TVKTIQESVANYY-NLRIEDLKSQRR-TRNIAYPRQIAM-YLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEKI consensus/100% ....l...h...h.t.....h.............h.h....h...........lu..h...t.ssh....t.. consensus/90% t.t.l.p.lsp.h.tlt.tthhutt+..tths.sRplsh.hl.+thht.sh.tlu..h.t+s+oslh.uhppl consensus/80% s.p.I.phVupha.tlp.t-hhuppR.tpphshsRpluh.aLh+phht.ohsplGp.F.s+cHoTVhtuhppl consensus/70% shcpI.chVucha.plphp-lhuppR.p+plshsRpluM.aLs+phpshShscIGphFsG+DHoTVhauhccl