Family alignment for the Bac_rhodopsin domain, displayed in

                                          cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 348780.NP1758A_from_4_to_231        100.0% 100.0%     TSTIYLGMVVALSLGAVVFAAVASRLSGT-ARRLGLIAAVPAAAMAVAYLGM--GLEWLTIETEG---------------    
 2 338187.VIBHAR_02160_from_82_to_304   92.1%  12.0%     VGISFWLISMALMASTVFFLWETQGVTAK-WKTSLTVSALVTLIAAVHYFYM-RD-VWVAT-------------------    
 3 266940.Krad_1795_from_22_to_270      99.6%  14.1%     IHFSLVVAGFALLAHFLRTWHSTGEVSAR-YRPAVLASLAVTGVAFLSYVYLVLEFDQGYDLREGVY----------QPN    
 4 309807.SRU_1500_from_16_to_266       99.1%  13.4%     VFNMFSFTVATMTASFVFFVLARNNVAPK-YRISMMVSALVVFIAGYHYFRITSSWEAAYALQNGMY---------QPTG    
 5 251221.gll0198_from_41_to_285        99.1%  13.9%     VYNAFSFAIAAMFASALFFFSAQALVGQR-YRLALLVSAIVVSIAGYHYFRIFNSWDAAYVLENGVY---------SLTS    
 6 357808.RoseRS_2966_from_12_to_257    99.1%  14.7%     VYNALSFTIAAMGAAFVFFLLARNTVAST-YQRAMVLAAIIVGIAAYHYVRMFTSWSTAFTVSGAIY---------TPTG    
 7 5207.CNG00350_from_57_to_302         97.4%  16.7%     VSV--WVFTALFIAGLVVALVLTSRTQKK-NRLFHGISAVILTVSALTYMSLATHIGSTFVPIYGPP------GHHEPLV    
 8 4896.SPCC31H12.02c_from_24_to_256    97.8%  14.3%     SSNYYWAVFAVFLLCAIVFPLVSIFSLPQ-KQTYHRFFSILSLVSCLAYFTMACNYGLKNVFSSASF----------FRE    
 9 103690.alr3165_from_4_to_233         96.9%  16.0%     ESLLHWIYVAGMTIGALHFWSLSRNPRGV-PQYEYLVAMFIPIWSGLAYMAMAIDQGKVEA-------------------    
10 4932.YBR054W_from_36_to_276          97.8%  11.8%     LFTV----FCVNLLFGVILVPLMFRKPVK-DRFVYYTAIAPNLFMSIAYFTMASNLGWIPVRAKYNH----VQTSTQKEH    
11 4932.YDR033W_from_36_to_276          97.8%  13.1%     FWTC----FCCYLLFGLILTFLMFRKPVN-DRFFYLTGIAPNFFMCIAYFTMASNLGWIPVKAKYNH----VQTSTQKEH    
12 5478.CAGL0K11880g_from_35_to_275     97.8%  11.0%     AWAV----FCVMFFCAIVMVLLMFRKTAN-DRLAYYTAIAPCVFMGIAYFTIASNLGWIPVRAKYNH----VRTSTQQQH    
13 5478.CAGL0H10076g_from_36_to_277     97.8%  12.6%     LWAA----FCVFLLLAIVFVLLMFRKPVN-NRFVYLTAIAPNVFMAIAYFSIASNLGWIPVRAKYNH----VRTSTQQQH    
14 309807.SRU_2780_from_11_to_249       99.1%  14.5%     LASSIYVNIALAGLTIIVIAVMSRSIHDSRAKLITMSTLMISVVSISSYMGLASGLTIDPLVMPEGH----------PLA    
15 348780.NP0642A_from_34_to_283        99.1%  14.3%     LASSLYINIALAGLSILLFVFMTRGLDDPRAKLIAVSTILVPVVSIASYTGLASGLTISVLEMPAGHFAEGSSVMLGGEE    
16 272569.rrnAC1659_from_29_to_268      99.1%  14.1%     LNSSIWVNIALAGVVILLFVAMGRDLESPRAKLIWVATMLVPLVSISSYAGLASGLTVGFLQMPPGH----------ALA    
17 64091.VNG0180G_from_29_to_271        99.1%  15.3%     LSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGH----------ALA    
18 362976.HQ3064A_from_45_to_285        99.1%  18.2%     LSSSLWVNIALAGLSILLFVYMGRNITSGRARLIWGATLMIPLVSISSYLGLASGLTVGFIEMPAGH----------ALA    
19 4932.YCR021C_from_35_to_285          96.9%  10.5%     LWAV-FAVFGFILLCYVVMFFIAENKGSRLTRYALAPAFLITFFEFFAFFTYASDLGWTGVQAEFNH--VKVSKSITGEV    
20 4924.PICST_45009_from_34_to_282      96.1%  11.3%     WLWALFSVFSLFAVVHAFVYGFTSSEKKSLKKTLLVIPLFINAVMAYTYFTYASNLGWTSTPTEFQH-------VTTSED    
21 272569.rrnAC0559_from_4_to_231       96.5%  19.9%     EIVWYGAGAGAFFVSAVVFVWFAATRGNI-RSSFYYLPPIHTSVAGAAYVAMALIAG--------------------GQL    
22 64091.VNG1660G_from_4_to_231         97.8%  18.9%     VATAYLGGAVALIVGVAFVWLLYRSLDGSPHQSALAPLAIIPVFAGLSYVGMAYDIGTVIV-------------------    
23 272569.rrnAC3280_from_4_to_228       96.5%  16.3%     VSVVYGITAAGFAVGVAIVGFLYASLEGSDERPILAALALIPGVAGISYVAMVFGIGTVTI-------------------    
24 309807.SRU_2511_from_4_to_227        96.1%  15.5%     ITIVYIIGTLGMLVGIPPALSLVGDEVGLDFDYVW----AIPGIAAFMYLLMTFDVGSVQF-------------------    
25 309807.SRU_2579_from_4_to_230        96.5%  18.5%     TTIVLMLGTAGMLFGIPPCLRLLDMEADG----HFGYLLLIPGFAALMYALMTFGVGTQTF-------------------    
26 5518.FG01440.1_from_27_to_264        98.2%  13.5%     SNWL-WAVTAIFLVSFLACFALSIKPRNN-ERIFHYLFTIALFVGTITYFSMASGIAYSVVPTQRNI-----------GR    
27 5141.NCU01735.1_from_27_to_260       98.2%  12.6%     SDWL-WAATALFAFNTLVLFALKFKASRG-ERLWHYIWIVTNLVATFAYFAMAANLAWDVVSQRNQV----------RQH    
28 5085.AFUA_7G01430_from_46_to_284     96.9%  14.2%     TLWV---VTVLMGLSSLVFYTLSARVPLS-KRVFHTLVSIMTTVSFIVYLALATGSGMAWKHDSLKH---THKHVPDTTQ    
29 5141.NCU10055.1_from_46_to_286       96.9%  14.1%     TLWV---TFALMVLSSGIFALLSWNVPTS-KRLFHVITTLITVVASLSYFAMATGHATTFNCDTAWD---HHKHVPDTSH    
30 5518.FG07554.1_from_33_to_272        96.9%  12.1%     ALWV---LFVAMTVVSAIFAILSWNVAVQ-RRVFYFLSTLTTIISALAYFAMASGQTSHFNCASVRD---HHKHVPDTHH    
31 5270.UM04125.1_from_31_to_272        98.7%  11.8%     SDWG-WVVFCVMAASTLGLLVWTFILPRK-RRTFHYLLTAVLAISTISWYSQASDLGATPITTQFLH---NSQRGGGYGG    
32 148305.MGCH7_ch7g179_from_26_to_267  99.1%  17.3%     SDWY-FTVMALMAVSAVIFTGAAIKKPLS-HRVFHQASALFCFVAAIGYFSMASGLGQVPIQAEFTR-----PDSSYTFA    
33 5518.FG03064.1_from_138_to_377       99.1%  16.2%     SDWY-FTVCAVMTVSSIVFVGMGLRKPRT-HRVFHYITASITMVAAIAYFTMGANLGWAPTEVEFHR-------RDHEVA    
34 5270.UM00371.1_from_41_to_272        97.4%  13.9%     LWVVFFI-----MAGFSLLFFISSQRASYRYRLMHTTTFFITAIAALSYFAMATGVGKTLSTIGGGH-------------    
35 266117.Rxyl_2037_from_2_to_234       98.2%  19.4%     EALWLWIGFVGMLLGTLYFAFLLTNAPEG-TRYFFVITATITGIAAIAYLVMATGSGSTVLP------------------    
36 362976.HQ1017A_from_7_to_242         99.6%  17.3%     EATWLWIGTIGMVLGTVYFAVRGRGSTDPEQQTYYIITTLIPAIAAAAYLAMATGLGVISMPIRG---------------    
37 272569.rrnAC3161_from_7_to_245       99.6%  21.7%     EGIWLWLGTAGMFLGMLYFIARGWGETDGRRQKFYIATILITAIAFVNYLAMALGFGLTFIEFGG---------------    
38 64091.VNG1467G_from_22_to_255       100.0%  19.2%     EWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGG---------------    
39 362976.HQ1014A_from_16_to_250       100.0%  19.1%     EGIWLALGTIGMLLGMLYFIADGLDVQDPRQKEFYVITILIPAIAAASYLSMFFGFGLTEVSLANGR-------------    
40 64091.VNG1764G_from_3_to_228         97.4%  21.1%     LTTWFWVGAVGMLAGTVLPIRDCIRHPS--HRRYDLVLAGITGLAAIAYTTMGLGITATTV-------------------    
41 272569.rrnAC0014_from_4_to_234       98.2%  20.2%     ITTWFTLGLLGELLGTAVLAYGYTLVPEE-TRKRYLLLIAIPGIAIVAYALMALGFGSIQS-------------------    
42 348780.NP4834A_from_4_to_231         98.2%  20.3%     LTTLFWLGAIGMLVGTLAFAWAGRDAGSG-ERRYYVTLVGISGIAAVAYAVMALGVGWVPV-------------------    
   consensus/100%                                        .............h.............................h....ah..............................    
   consensus/90%                                         ........hhhhhhshhhhhhh.........p.hhh..hh.shh.hhtYh.hh.s.s.......................    
   consensus/80%                                         ...h..h.hshhhhshhhhhhh..th.....chhhhh.hhhshhuhhsYhshs.shshh.h...................    
   consensus/70%                                         ..hh.hhshshhhluhlhhhhhthphsst.t+hhhhhshhlshlushuYhshu.shuhs.h...................    

                                          cov    pid  81          .         1         .         .         .         .         :         . 160
 1 348780.NP1758A_from_4_to_231        100.0% 100.0%     ---REQSIMRFLGYTVALTAYTYLLARPV--------GLSR-------RK----AVGLLAVLLVTLWSALATWLT-----    
 2 338187.VIBHAR_02160_from_82_to_304   92.1%  12.0%     GETPTVY--RYIDWLLTVPLLMIEFYLIL--------RAIG-------AASAGIFWRLLVGTLIMLIAGFLGEVG----Y    
 3 266940.Krad_1795_from_22_to_270      99.6%  14.1%     AEALNTLVPRYMDWAVTVPLLMVEFLAVS--------AVVG-------AAARRTRFTLVGLAFLMILTGFIGAAV-----    
 4 309807.SRU_1500_from_16_to_266       99.1%  13.4%     ELFNDAY--RYVDWLLTVPLLTVELVLVM--------GLPK-------NERGPLAAKLGFLAALMIVLGYPGEVS-----    
 5 251221.gll0198_from_41_to_285        99.1%  13.9%     EKFNDAY--RYVDWLLTVPLLLVETVAVL--------TLPA-------KEARPLLIKLTVASVLMIATGYPGEIS-----    
 6 357808.RoseRS_2966_from_12_to_257    99.1%  14.7%     EPFNEAY--RYADWLLTVPLLLVELVAVL--------HITG-------QQRSGMIARLVIAAVLMIVLGYPGEIS-----    
 7 5207.CNG00350_from_57_to_302         97.4%  16.7%     HFFRQVFSIRYIDAAITGPLTILALSRLA--------GVSP-------AT----ALSAALAQLVVVYSAWAASVGGGWPW    
 8 4896.SPCC31H12.02c_from_24_to_256    97.8%  14.3%     VSVRMVYYVRYIQWLINFPLIIVMLHWTV--------GVSI-------LE----IAYVVCYVLFAIVCLLAAALT-----    
 9 103690.alr3165_from_4_to_233         96.9%  16.0%     -AGQIAHYARYIDWMVTTPLLLLSLSWTA--------MQFI-------KKDWTLIGFLMSTQIVVITSGLIADLS-----    
10 4932.YBR054W_from_36_to_276          97.8%  11.8%     PGYRQIFYARYVGWFLAFPWPIIQMSLLG--------GTPL-------WQ----IAFNVGMTEIFTVCWLIAACV-----    
11 4932.YDR033W_from_36_to_276          97.8%  13.1%     PGYRQIFYSRFVGWFLALPWPIIQICMLA--------GTPF-------WQ----MAFNVCITEFFTVCWLIAACV-----    
12 5478.CAGL0K11880g_from_35_to_275     97.8%  11.0%     PGVRQIFYARYVGWFMALPWPVIQASLMG--------KTPI-------WQ----IAFNIAMTEVFTVCFLIAACV-----    
13 5478.CAGL0H10076g_from_36_to_277     97.8%  12.6%     PGVRQIFYARYVGWFMALPWPLIQASILG--------KTPV-------WH----VAFNCTMGCVFSVCFLIAACV-----    
14 309807.SRU_2780_from_11_to_249       99.1%  14.5%     GQEVLSLWGRYLTWAFSTPFILLALGLLA--------RSTT-------DK----IFSAIVLDVFMCLTGLAAALT-----    
15 348780.NP0642A_from_34_to_283        99.1%  14.3%     VDGVVTMWGRYLTWALSTPMILLALGLLA--------GSNA-------TK----LFTAITFDIAMCVTGLAAALT-----    
16 272569.rrnAC1659_from_29_to_268      99.1%  14.1%     GQEVLSPWGRYLTWTFSTPMILLALGLLA--------DTDI-------AS----LFTAITMDIGMCVTGLAAALI-----    
17 64091.VNG0180G_from_29_to_271        99.1%  15.3%     GEMVRSQWGRYLTWALSTPMILLALGLLA--------DVDL-------GS----LFTVIAADIGMCVTGLAAAMT-----    
18 362976.HQ3064A_from_45_to_285        99.1%  18.2%     GQEVMSQWGRYLTWALSTPMILLALGVLA--------DVDR-------GS----LFTVIAADIGMCVTGLGAALI-----    
19 4932.YCR021C_from_35_to_285          96.9%  10.5%     PGIRQIFYSKYIAWFLSWPCLLFLIELAA-----STTGENDDISALDMVH---SLLIQIVGTLFWVVSLLVGSLI-----    
20 4924.PICST_45009_from_34_to_282      96.1%  11.3%     LDVRQIFYVKWVGYFLTWPLVLTIIEVTTQSTDFFEEGDILTKFFSLFSR----LFAKILATEVFVIGLLIGALI-----    
21 272569.rrnAC0559_from_4_to_231       96.5%  19.9%     GDTVSITTLRFADWIVSTPIITYYLARLA--------GVDT-------QT----RRLAVAANVVMIGVGYGFVSM-----    
22 64091.VNG1660G_from_4_to_231         97.8%  18.9%     -NGNQIVGLRYIDWLVTTPILVGYVGYAA--------GASR-------RS----IIGVMVADALMIAVGAGAVVT-----    
23 272569.rrnAC3280_from_4_to_228       96.5%  16.3%     -GETTLVGFRYLDWVVTTPLLVGFIGYTA--------GASR-------RA----IFGVMAADALMILAGVGAVVA-----    
24 309807.SRU_2511_from_4_to_227        96.1%  15.5%     -QGYHVPIPRYIDWALTTPLLVGYTAYIA--------GASR-------GM----IAGTALADFMMIVFGLGAVVF-----    
25 309807.SRU_2579_from_4_to_230        96.5%  18.5%     -QGQTVPLLRYLDWLVTTPIMIGYAAYVA--------GTSK-------RG----IVGAALVDAVMIGLGTAAVVT-----    
26 5518.FG01440.1_from_27_to_264        98.2%  13.5%     AASYQIYYAKYINWVVSFPVVLLALGLMS--------GVSW-------AT----ILFNIFLAWIWIISYLCSAYT-----    
27 5141.NCU01735.1_from_27_to_260       98.2%  12.6%     GPTRQIFWAKYVLWVVSFPAAILAMGILS--------GVSW-------AT----IVFNIFLSWIWVIGYLVAAYV-----    
28 5085.AFUA_7G01430_from_46_to_284     96.9%  14.2%     DYFRQVMWLRYLNWFVTEPLSLINLALVS--------GLPG-------AH----LLVAIAADYVMLGSGLLGTFV-----    
29 5141.NCU10055.1_from_46_to_286       96.9%  14.1%     QVCRQVFWGRYVDWALTTPLLLLELCLLA--------GVDG-------AH----TLMAIVADVIMVLCGLFAALG----E    
30 5518.FG07554.1_from_33_to_272        96.9%  12.1%     DVCRQVFWARYVDWAISTPILVVELCLLA--------GVDG-------AH----TIMAVIANVIFVLAGAFSAVG-----    
31 5270.UM04125.1_from_31_to_272        98.7%  11.8%     YPTRQIWYSRYVDWTLTTTLLLLSLLLIT--------GLPL-------SI----IFITLFFNILMIVCGLLGALT-----    
32 148305.MGCH7_ch7g179_from_26_to_267  99.1%  17.3%     AGTREIFYARYVDWAVSLPLVVLALMMSS--------GVPL-------ST----TLTTMVAAEIFNVCLLIGALT-----    
33 5518.FG03064.1_from_138_to_377       99.1%  16.2%     GNYREIFYVRYIDWFITTPLLLMDLLLTA--------GMPW-------PT----VLYVILVDEIMIVTGLVGALV-----    
34 5270.UM00371.1_from_41_to_272        97.4%  13.9%     HAPREFYFARYIDWALTTPLLLFDLTLLA--------GLPV-------AE----IIVLVLADEVMIVTGVIAGVH-----    
35 266117.Rxyl_2037_from_2_to_234       98.2%  19.4%     -DGREFYWARYIDWVITTPLLLLDLCLLA--------LADP-------RRNVTFIASLIALDVVMILTGLWAGAT-----    
36 362976.HQ1017A_from_7_to_242         99.6%  17.3%     TEVIDIYWARYADWLLTTPLLIIDLALVA--------GARK-------QT----LYKLIIIDAIMILGGLAGSMM-----    
37 272569.rrnAC3161_from_7_to_245       99.6%  21.7%     -EQHPIYWARYTDWLFTTPLLLYDLGLLA--------GADR-------NT----IYSLVSLDVLMIGTGVVATLSAGSGV    
38 64091.VNG1467G_from_22_to_255       100.0%  19.2%     -EQNPIYWARYADWLFTTPLLLLDLALLV--------DADQ-------GT----ILALVGADGIMIGTGLVGALT-----    
39 362976.HQ1014A_from_16_to_250       100.0%  19.1%     --VVDVYWARYADWLFTTPLLLLDIGLLA--------GASQ-------RD----IGALVGIDAFMIVTGLVATLT-----    
40 64091.VNG1764G_from_3_to_228         97.4%  21.1%     -GDRTVYLARYIDWLVTTPLIVLYLAMLA--------RPGH-------RT----SAWLLAADVFVIAAGIAAALT-----    
41 272569.rrnAC0014_from_4_to_234       98.2%  20.2%     -EGHAVYVVRYVDWLLTTPLNVWFLALLA--------GASR-------ED----TVKLVVLQALTIVFGFAGAVT-----    
42 348780.NP4834A_from_4_to_231         98.2%  20.3%     -AERTVFVPRYIDWILTTPLIVYFLGLLA--------GLDS-------RE----FGIVITLNTVVMLAGFAGAMV-----    
   consensus/100%                                        .........+ah.hhhs.sh.hh.h.h............................h..h.h..hh.h.hh..........    
   consensus/90%                                         .........RYhsWhhshPh.hh.h.hhs........t.s.........t....hhh.hhhs.hhhh.hhhu.h......    
   consensus/80%                                         ...hthhh.RYlsWhlohPhhlh.hshhs........shsh.......tp....hhhhhhhshhhhhshhhushs.....    
   consensus/70%                                         .thpphhhsRYlsWhlosPlllhtlshlu........sssh.......tp....hhhhlhhshlhllsGlhushs.....    

                                          cov    pid 161          .         .         .         2         .         .         .         . 240
 1 348780.NP1758A_from_4_to_231        100.0% 100.0%     --TGA---AESAITLLSISAYLFGVYLLF-KPFSRVAAAAPGEAR-LLYGKLRNLFVLCWGG-LLVASAISE------QA    
 2 338187.VIBHAR_02160_from_82_to_304   92.1%  12.0%     ISVTV-------GFVIGMLGWFYILYEIFLGEAGKAAKHQASDSVKFAYNLMRWIVTVGWAI-YPLGYVLG-------YM    
 3 266940.Krad_1795_from_22_to_270      99.6%  14.1%     QEDGTSRTALIAWGVVSSAFYAALHVVLI-RVLRRSRGAMGAQAY-TSYRNATILLLSVWGW-YPIAYALQVW-----FG    
 4 309807.SRU_1500_from_16_to_266       99.1%  13.4%     -ENAALFGTRGLWGFLSTIPFVWILYILF-TQLGDTIQRQSSRVS-TLLGNARLLLLATWGF-YPIAYMIPMAFPEAFPS    
 5 251221.gll0198_from_41_to_285        99.1%  13.9%     -DDIT---TRIIWGTVSTIPFAYILYVLW-VELSRSLVRQPAAVQ-TLVRNMRWLLLLSWGV-YPIAYLLPM------LG    
 6 357808.RoseRS_2966_from_12_to_257    99.1%  14.7%     -SDVT---TRLVWGTLSSIPFLYILYVLW-RDLGAVMERESAEVR-VLLRNLRLLLLASWGV-YPIAYLLPL------LS    
 7 5207.CNG00350_from_57_to_302         97.4%  16.7%     GKHGKGAGTKWAWFAVADLAFLAVWTVLL-AKGRKASVHRARPTQ-GLFYLLSSMIILIHIG-QGVIWILT-------DG    
 8 4896.SPCC31H12.02c_from_24_to_256    97.8%  14.3%     --SSP---YKWAYYGFSFVGYFIALAHSV-VLHKKYASRLETSAR-LGFLWSIVYLHVIWFL-YYACWILS-------EG    
 9 103690.alr3165_from_4_to_233         96.9%  16.0%     -ERDW---VRYLWYICGVCAFLIILWGIW-NPLRAKTRTQSSELA-NLYDKLVTYFTVLWIG-YPIVWIIGP------SG    
10 4932.YBR054W_from_36_to_276          97.8%  11.8%     --HST---YKWGYYTIGIGAAIVVCISLM-TTTFNLVKARGKDVS-NVFITFMSVIMFLWLIAYPTCFGIT-------DG    
11 4932.YDR033W_from_36_to_276          97.8%  13.1%     --HST---YKWGYYTIGLGAAIVVSISVM-TTSYNLVKQRDNDIR-LTFLVFFSIIMFLWIIAYPTCFGIT-------DG    
12 5478.CAGL0K11880g_from_35_to_275     97.8%  11.0%     --HST---YKWGYMTIGCGGAIVAMISVM-TTTRHLVRAKKDGELWKGFNIYFGLVMFFWAI-YPICFGIT-------DG    
13 5478.CAGL0H10076g_from_36_to_277     97.8%  12.6%     --HST---YKWGYFTIGCGAGIVSIISLM-TTTYTLIKKCGDKEIKRCFLIYVCPIIVLYLVAWPVCFGIT-------DG    
14 309807.SRU_2780_from_11_to_249       99.1%  14.5%     TSSHA---MRWLWYALSTAFFVGVLYYLL-VEWPAEADEAGTA---DIFSTLQWMTIVLWIG-YPVVWALGN------EG    
15 348780.NP0642A_from_34_to_283        99.1%  14.3%     TSSHL---MRWFWYAISCACFIVVLYILL-VEWAQDAKAAGTA---DIFSTLKLLTVVMWLG-YPIVWALGV------EG    
16 272569.rrnAC1659_from_29_to_268      99.1%  14.1%     TSSHL---LRWVFYGISCAFFVAVLYVLL-VQWPADAEAAGTS---EIFGTLKILTVVLWLG-YPILWALGS------EG    
17 64091.VNG0180G_from_29_to_271        99.1%  15.3%     TSALL---FRWAFYAISCAFFVVVLSALV-TDWAASASSAGTA---EIFDTLRVLTVVLWLG-YPIVWAVGV------EG    
18 362976.HQ3064A_from_45_to_285        99.1%  18.2%     TSSYL---FRWAFYIISCTFFVVVLFALL-FEWPVSAAAAGTD---DIFSTLRLLTVVLWIG-YPVIWAAGV------EG    
19 4932.YCR021C_from_35_to_285          96.9%  10.5%     --KST---YKWGYYTIGAVAMLVTQGVIC-QRQFFNLKTRGFNAL-----MLCTCMVIVWL--YFICWGLS-------DG    
20 4924.PICST_45009_from_34_to_282      96.1%  11.3%     --EST---YKWGYFTFSVTAQLFAEIYIF-VNVMTAWRQSTQKLG----LILVLCQLVIWIL-YPIAWGLS-------EG    
21 272569.rrnAC0559_from_4_to_231       96.5%  19.9%     --SGS---LRWIAFAVSTVAFIGLLYLYI-KTFARKINAATASVR-SLFQSLRDLTVVTWSL-YPVVYFLGP------LG    
22 64091.VNG1660G_from_4_to_231         97.8%  18.9%     --DGT---LKWALFGVSSIFHLSLFAYLY-VIFPRVVPDVPEQIG--LFNLLKNHIGLLWLA-YPLVWLFGP------AG    
23 272569.rrnAC3280_from_4_to_228       96.5%  16.3%     --AGT---LKWALFGVSAVFHISLFAYLY-LIFPRSVPDDPQRIG--LFSLLKNHVGLLWIA-YPLVWLAGP------EG    
24 309807.SRU_2511_from_4_to_227        96.1%  15.5%     --SST---AQWVFFGLSSACHLTLLALLY-GPVRNSAFGEPPSHR-RLARLLLNYVGLLWLA-YPLVWLFG-------PG    
25 309807.SRU_2579_from_4_to_230        96.5%  18.5%     --APP---TQWIFFGLAALCHLVLLGALY-GPIRQNAWDQPSTRQ-RLARLLVNHTGLLWIT-YPVVWVFG-------PG    
26 5518.FG01440.1_from_27_to_264        98.2%  13.5%     --TTS---YKWGFFAFGTFAYLLLAYQTL-HPGRKSATRLSLS---RDYLMLAGWTNLLWLL-YPIAFGLS-------DG    
27 5141.NCU01735.1_from_27_to_260       98.2%  12.6%     --PSN---YKWGLFAFAALAHIFLAFETL-FRARSSANRVGIN---RDYTMLSGWTNLLWLL-YPIAWGVS-------DG    
28 5085.AFUA_7G01430_from_46_to_284     96.9%  14.2%     -GHTS---RRWVWFTVSALGYLTTVYHVA-INGGKAANNKDAQTR-RFFASLSGVTLVVKVL-YPIALAAG-------SL    
29 5141.NCU10055.1_from_46_to_286       96.9%  14.1%     GGNTA---QKWGWYTIGCFSYLFVIWHVA-LHGSRTVTAKGRGVS-RLFTGLAVFALLLWTA-YPIIWGIA-------GG    
30 5518.FG07554.1_from_33_to_272        96.9%  12.1%     HANTA---QKWGWYAISIVGFVFTIWHVA-VPGSRTSRARGTKIA-RLFGSVSVASLILWIV-YIVVWGAA-------GG    
31 5270.UM04125.1_from_31_to_272        98.7%  11.8%     --RTR---YKWGYFAFACAALGYVLYHVF-ASGLRSSRRLGSRFG-RAFLAASLLLAIIWPM-YPICWGLS-------EG    
32 148305.MGCH7_ch7g179_from_26_to_267  99.1%  17.3%     --QTT---YKWGYFTFAVMAEWFVFYQLL-IPGRKYASAVGGSVG-STYLTASLLVVVCWLF-YPVSWGLS-------EG    
33 5518.FG03064.1_from_138_to_377       99.1%  16.2%     --TTS---YKWGYFTIGCVALVYIVYQLA-WEARIHANHVGPDVG-RVFLWCGSLTAVVWIL-YPIAWGVC-------EG    
34 5270.UM00371.1_from_41_to_272        97.4%  13.9%     -PTKT---GKWGFFTFSCIAFAWVLLQLV-TSGRSTAFLRSPKVG-GLYNQVSLALVVVWTA-YPVAFALC-------EG    
35 266117.Rxyl_2037_from_2_to_234       98.2%  19.4%     -VNVA---GRAILFIISTAAFIGVLYLLV-SRLFAEASRRTPAVA-QIFRTLAVLTIVLWIC-YPIVWLIGT------EG    
36 362976.HQ1017A_from_7_to_242         99.6%  17.3%     QQGAV---IRIVWWAVSTAAFIILLYYLL-GELSERARSRSAETG-IVFNRLRNITLGLWAL-YPIVWILGTG-----GG    
37 272569.rrnAC3161_from_7_to_245       99.6%  21.7%     LSAGA---ERLVWWGISTAFLLVLLYFLF-SSLSGRVANLPSDTR-STFKTLRNLVTVVWLV-YPVWWLVGS------EG    
38 64091.VNG1467G_from_22_to_255       100.0%  19.2%     -KVYS---YRFVWWAISTAAMLYILYVLF-FGFTSKAESMRPEVA-STFKVLRNVTVVLWSA-YPVVWLIGS------EG    
39 362976.HQ1014A_from_16_to_250       100.0%  19.1%     -KVVV---ARYAFWTISTISMVFLLYYLV-AVFGEAVSDADEDTR-STFNALRNIILVTWAI-YPVAWLVGT------EG    
40 64091.VNG1764G_from_3_to_228         97.4%  21.1%     --TGV---QRWLFFAVGAAGYAALLYGLL-GTLPRALGD-DPRVR-SLFVTLRNITVVLWTL-YPVVWLLSP------AG    
41 272569.rrnAC0014_from_4_to_234       98.2%  20.2%     --PSP---VSYALFAVGGALFGGVIYLLY-RNIAVAAKSTLSDIEVSLYRTLRNFVVVLWLV-YPVVWLLGA------AG    
42 348780.NP4834A_from_4_to_231         98.2%  20.3%     --PGI---ERYALFGMGAVAFIGLVYYLV-GPMTESASQRSSGIK-SLYVRLRNLTVVLWAI-YPFIWLLGP------PG    
   consensus/100%                                        ............hhhhu....h......h..............................h.....h..hh..........    
   consensus/90%                                         .........phhhhhhu.h.hhhhhh.lh.h.h.t.h.t.s.t.....h..h..hhhhhWhh.Yslhahhs........u    
   consensus/80%                                         ..tss...h+hhhashushhhhhlhh.lh.h.h.t.htt.s.t....ha.hhh.hhhlhWhh.YPlsahls........G    
   consensus/70%                                         ..sss...h+asaaslushsalhllhhlh.h.hhptspttsspht.pha.hlt.hhhllWhh.YPlsahlu.......tG    

                                          cov    pid 241          :         .         .         .       ] 288
 1 348780.NP1758A_from_4_to_231        100.0% 100.0%     IGLTD-AFIGQFAASYIDLVLMLGIGGLVLFSRFVRDPTATERADATA    
 2 338187.VIBHAR_02160_from_82_to_304   92.1%  12.0%     MGAVD-DASLNLVYNLADVVNKIAFGLLIWYAATSESQ------DAKG    
 3 266940.Krad_1795_from_22_to_270      99.6%  14.1%     GQWWT--VTIQVGFSAADIAAKVGFGALIHKVAKLRTAEEVEAGSTTH    
 4 309807.SRU_1500_from_16_to_266       99.1%  13.4%     NTPGT-IVALQVGYTIADVLAKAGYGVLIYNIAKAKSEEEGFNVSEMV    
 5 251221.gll0198_from_41_to_285        99.1%  13.9%     VSGTSAAVGVQVGYTIADVLAKPVFGLLVFAIALVKTKADQESSEPHA    
 6 357808.RoseRS_2966_from_12_to_257    99.1%  14.7%     IDPATALVARQVGYSIADIVAKPAYGLLIYAIARIKTQQERGESSEGT    
 7 5207.CNG00350_from_57_to_302         97.4%  16.7%     INLIS-VNAEIISYGIMDVAAKIGFTHLLLLLHKSDEEGPW---TLPA    
 8 4896.SPCC31H12.02c_from_24_to_256    97.8%  14.3%     LNVIS-PIGEAIFYSILDLFEFGFFGAAFSWMLDLVGIEN----FKSP    
 9 103690.alr3165_from_4_to_233         96.9%  16.0%     FGWIN-QTIDTFLFCLLPFFSKVGFSFLDLHGLRNLNDSRQ---TTGD    
10 4932.YBR054W_from_36_to_276          97.8%  11.8%     GNVLQ-PDSATIFYGIIDLLILSILPVLFMPLANYLGIERLGLIFDEE    
11 4932.YDR033W_from_36_to_276          97.8%  13.1%     GNVLQ-PDSAGIFYGIIDLILMCFIPTLLVPIANHFGADKLGYHFGPS    
12 5478.CAGL0K11880g_from_35_to_275     97.8%  11.0%     GNVLQ-PDSALIFYGILDIILYAFLPCLWVPIASYIGISNMGYNFSDA    
13 5478.CAGL0H10076g_from_36_to_277     97.8%  12.6%     GNVLQ-PDSEAIFYGIIDLLLLGIFPALYVPMASHVGYENITYGIFDS    
14 309807.SRU_2780_from_11_to_249       99.1%  14.5%     LALLE-VGATSWAYSGLDIFAKYAFTIILVLYVSDEPDAVVSTSPATA    
15 348780.NP0642A_from_34_to_283        99.1%  14.3%     VAVLP-VGYTSWAYSALDIVAKYIFAFLLLNYLTSNEGVVSGSILDVP    
16 272569.rrnAC1659_from_29_to_268      99.1%  14.1%     VALLS-VGVTSWGYSGLDILAKYVFAFLLLRWVAANEGTVSGSGMGIG    
17 64091.VNG0180G_from_29_to_271        99.1%  15.3%     LALVQSVGVTSWAYSVLDVFAKYVFAFILLRWVANNERTVAVAGQTLG    
18 362976.HQ3064A_from_45_to_285        99.1%  18.2%     FALIQSVGLTSWGYSGLDILAKYAFSFLLLRWVADNEPTVSSPASNTA    
19 4932.YCR021C_from_35_to_285          96.9%  10.5%     GNRIQ-PDGEAIFYGVLDLCVFAIYPCYLLIAVSRDGKLPRLSLTGGF    
20 4924.PICST_45009_from_34_to_282      96.1%  11.3%     GNKIQ-PDSEAAFYGVLDFFTFFFIPVGLTWLAINNVDE-----EFFS    
21 272569.rrnAC0559_from_4_to_231       96.5%  19.9%     TGIIQ-APDLNFLVAVLDTIAKVGFMSILLVRYNSVETFVDSWSVAPA    
22 64091.VNG1660G_from_4_to_231         97.8%  18.9%     IGEAT-AAGVALTYVFLDVLAKVPYVYFFYARRRVFMHSESPPAPEQA    
23 272569.rrnAC3280_from_4_to_228       96.5%  16.3%     LGFAT-YVGVSITYAFLDLLAKVPYVYFFYARRQVFATKLL---RDSG    
24 309807.SRU_2511_from_4_to_227        96.1%  15.5%     LQWVD-AAGIAVIISYLDVTAKVPFVYFIYRARKNFVKVTGGEPETAS    
25 309807.SRU_2579_from_4_to_230        96.5%  18.5%     LQLIS-ATGVSIMIMYMDVLAKVPFVYFVYRSREVFTGADARSAPSTA    
26 5518.FG01440.1_from_27_to_264        98.2%  13.5%     GNEIG-VTQMFIFFGILDVLLIAGLAFAFMFLSKRWDYGALNLHFTQY    
27 5141.NCU01735.1_from_27_to_260       98.2%  12.6%     GNVIG-VTKSMIFFGILDVLFITTLSYAFVVLSRRWDYSRLNIAFTQY    
28 5085.AFUA_7G01430_from_46_to_284     96.9%  14.2%     ALKMN-VDTETVVFAIYDIFTQGLLGYWLILAHDSANGLSL---YVDG    
29 5141.NCU10055.1_from_46_to_286       96.9%  14.1%     ARRTN-VDTEILIYTVLDLLAKPVFGFWLLLSHRAMPETNI---DLPG    
30 5518.FG07554.1_from_33_to_272        96.9%  12.1%     AWQVK-VGTEVVIYAVLDVLTKAVIGFWIITATRQNRDTTP---EIGG    
31 5270.UM04125.1_from_31_to_272        98.7%  11.8%     GNVIG-VSAEFLWYGLLDIFSKPIFAFLFLGMLKKCDYGALRL-RSGK    
32 148305.MGCH7_ch7g179_from_26_to_267  99.1%  17.3%     GNVIH-PDSEAIFYGILDIFSRPAVGFVLLLGHRNTDFASLGFEAREP    
33 5518.FG03064.1_from_138_to_377       99.1%  16.2%     GNLIS-PDSEAVFYGILDIIAKPVFGAILLFGHRNIDPARLGLRIRDV    
34 5270.UM00371.1_from_41_to_272        97.4%  13.9%     TGKLN-PDAEILFFAILDVIAKPLWGAWLLLATPDEGHVLVPESLCAP    
35 266117.Rxyl_2037_from_2_to_234       98.2%  19.4%     FGAVS-LSVEVFLFMVLDLLAKVGFGLLLLSSRQALSDIGSGA-VAGT    
36 362976.HQ1017A_from_7_to_242         99.6%  17.3%     FGIIA-VTTEIMLYVMLDIGTKIGFGAVLLESQDVLQAASHPS-STND    
37 272569.rrnAC3161_from_7_to_245       99.6%  21.7%     LGLVG-IGIETAGFMVIDLVAKVGFGIILLRSHGVLDGAAETT-GTGA    
38 64091.VNG1467G_from_22_to_255       100.0%  19.2%     AGIVP-LNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSAGD    
39 362976.HQ1014A_from_16_to_250       100.0%  19.1%     LALTG-LYGETLLFMVLDLVAKVGFGFILLRSRAIMGGGSEPTPSAQE    
40 64091.VNG1764G_from_3_to_228         97.4%  21.1%     IGILQ-TEMYTIVVVYLDFISKVAFVAFAVLGADAVSRLVAADAAAPA    
41 272569.rrnAC0014_from_4_to_234       98.2%  20.2%     VGLMD-VETATLVVVYLDVVTKVGFGVIALLAMIDLGSAGETAEEPTA    
42 348780.NP4834A_from_4_to_231         98.2%  20.3%     VALLT-PTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGESLAGVD    
   consensus/100%                                        ...h.......h.h.hhsh.....h..h....................    
   consensus/90%                                         ht.ht......hhh.hhDlh.h.hhshhhh..h...............    
   consensus/80%                                         hshhp..s...hhashlDlhshhhhshhhh.hht..t........t.s    
   consensus/70%                                         hshlp.ssstthhashlDlhsKssashhhhhhtp.hstt......sss