cov pid 1 [ . . . . : . . . 80 1 6239.F53B7.5_from_2191_to_2284 100.0% 100.0% CKLCTNLPAIGLEPN-QLDANGRNGQFILDHV-T-TATACRVI-YLSCAG--SSASENSTILFNG-----GAQTMSNQGI 2 6239.Y37F4.8_from_62_to_152 90.4% 16.0% CTSCLMVPIE----------ESEKAGISSTNKTRNSETGCFVQ-TVQCAS--KVPDSDTYIQFNK-----GRKGLFAAVE 3 6239.F53B7.5_from_618_to_703 87.2% 18.4% CMNCTN-LVVSQSIHPE---GVTYLDH--------TLDKCLSV-DAHCLP--INGGTLVELMYNN-------KGILDSGS 4 6239.F53B7.5_from_1847_to_1936 91.5% 19.4% CQSCGVLPMTSLHAF-----YPYWNGISTISIE--EESTCMTA-VAACEG--VTSSDTVAWIASG--------TILSSGT 5 6239.F53B7.5_from_925_to_1013 90.4% 18.4% CSGCNRLPVAILSS------SSEYTNGLLKATT--SYSNCMSV-QLTCYG--VAATDQAYLIYAD--------ATLATSR 6 6239.F53B7.5_from_1150_to_1240 92.6% 24.5% CAQCSRLNAEAVSS-----IDNSLQNGVTVMTLS-TVNQCSVI-QVTCSG--ITANERVTLLAAT--------TSLVSGV 7 6239.F53B7.5_from_2312_to_2414 92.6% 16.4% GLACSRSSLVNP------LIEGDAGAYLVLDTK--IVNGGLST-TLSCAA---PDDSSTAVLTNG---GGSVLGTSDNGL 8 6239.F53B7.5_from_2077_to_2173 91.5% 14.3% NTNCARNVMLTIP-------SGYNAGYLSMNTI--SSETSLQV-VMSCEA---PTGISESLLLSS----TGATSSTGTPT 9 6239.F53B7.5_from_1618_to_1708 92.6% 19.4% CSQCARLPIQSVND------TEFLNGFTTLTTSI-NAFGCMTV-SMMCEG--VLPSDPVSIVING------NYAEYANG- 10 6239.F53B7.5_from_1389_to_1479 92.6% 20.4% CSQCGRAPIVSVGTG-----STYLNGFTTVVQST-DAQGCSLL-FVKCQG--MTSADAVALLSSG--------MPYSSGF 11 6239.F53B7.5_from_2562_to_2651 91.5% 17.3% SASCNTGFVTAVST------PGYTSGFMTVDTT--TSGSIMSA-DITCAS--PVTSQTAALLGSN-------NNQVSSGV 12 6239.Y37H2A.10_from_47_to_138 90.4% 17.8% CVSCTVGLLT--------FTTANFGDMTPIQTPGTDANNCAIL-TLTCQG---TPVDPLNNYYSD--SKVPRDAGADSGT 13 6239.T21B4.3_from_56_to_148 91.5% 20.8% CTTCTAALIT--------LTQGTDGAVDATPVEGVDATGCATI-TYTCENTPVDAQNVIFLTFYG----GGIDRGVDQGT 14 6239.K02E7.1b_from_41_to_140 91.5% 19.4% CNSCTADLIG--------IKTGADGDFPPTSVIG-TVNGCRTI-TYTCQRTPPVATDVVQITYYSDSRTDPASIENGVGV 15 6239.R07B1.6_from_37_to_132 91.5% 19.2% CTTCTTDLIG--------IVTGNDGDMTPTSAITADANGCSVI-TYTCERTPVVATDVVLITFYS-DSQNPTDVGTENGV 16 6239.F53B7.5_from_1954_to_2048 100.0% 38.9% AQNCSNLIAAPLTST-ELGENESNGQLILDHYIN-ITTMERIV-TITCYG--GSATDNTTISFNG-----GSRTMSGTGQ 17 6239.F53B7.5_from_2434_to_2530 97.9% 28.3% CQLCPNMQAIALTSSQLVINGATNGQLLLSHSVD-QSSKCRIV-VIKCRG--ENTNQNATIFFNS-------NGQSLSAM 18 6239.F53B7.5_from_812_to_900 88.3% 14.0% CNNCVALEPLAKNA------AGTYNGMLVLWHY--KQNGCNRV-SISCQA-TMSENDVAYLYYNP-------NGEVMSGV 19 6239.F53B7.5_from_1732_to_1820 90.4% 17.3% CNTCPNIVPRLMGT------GASYDGMLVINHFKDRATACRKA-VIDCMG--TMDYETAELYLDS-------VKINSSSQ 20 6239.F53B7.5_from_1029_to_1120 91.5% 19.0% CGSCANMQSAKALLQ-----TNTYDGMIVLYNYVDPVTKCKKV-DISCQG--TTGTEVASLIFEP-------MGTVSNGP 21 6239.F53B7.5_from_1500_to_1591 91.5% 19.0% CGSCPNMVAVAMSSG----VSNSYDGMVIMDHFVNPATNCRAL-TVTCGP--TVSTENATLYFNS--------VPISTGM 22 6239.F53B7.5_from_1273_to_1361 89.4% 25.3% CSKCANMLAKALNPS-----DGSYDGMIVLNHH--TSAGCRRV-DISCGP--TLNTENATIFFGS--------SVVATGP 23 6239.C09G9.3_from_190_to_279 85.1% 8.7% CPVVPLILT-----------DSDFPDGTATFAY--DSNTCRTVATATCSSTDTSLDLFAALVGNA-------VNYLEYAE 24 6239.R07B1.7_from_50_to_131 83.0% 17.3% CQSCTL------DATTVIMVHPSAKPFTSDTID--DTQTCAIR-TLVCDA--RSPGGDVLVSFNR------DDSGSTGGP 25 6239.F40H6.5_from_1195_to_1283 84.0% 13.5% CDINSITLGEGDANTPQLQLDAVLGE-----------SSGSSL-SIYCRG---LPNYSIYMMFNV--------NQGGPPP 26 6239.C30G12.4_from_160_to_251 88.3% 16.5% CTASQVTFAQ----------SGGGVQIDTAGIPG-TAAGCLTL-TLTCTA---GTGNYAFMQFNN-NQGGPAENQDMGMT 27 6239.F56H9.6_from_131_to_238 96.8% 17.1% CNPNAVSLGMGDANNPQIFIDVTYNNYLSTTDPV-TGIVTSTM-TVTCSA---LNGYNTYMLFNG-GQGGPADNQN--LP 28 6239.B0554.4_from_417_to_520 94.7% 11.0% CSPKSLTYGVGDNQTPQFQIDVGYSDFMTTP-NG-ATETISTM-KISCTA---IAGFIASMQVDG---AEAIENGF---D 29 6239.B0554.2_from_81_to_185 96.8% 8.3% CSPTALVYGVGDNQL---NLAVMYTDYLATPIIG-TSDTTSTM-KVRCSA---IADYHAIMTIND---YTPTENDVVPPP 30 6239.B0554.4_from_77_to_181 96.8% 11.1% CSPTALTYGVGDNDK---VIDVDYSDFMSTPVTG-SLETTSTM-KVSCSA---KDKYIANMLIDN---IGAQENDATPPP 31 6239.B0554.4_from_307_to_412 97.9% 10.2% CSSTAVTYGMGDNQQPEVQIDVTQTDFMSTPIAG-TIETTSTM-KVSCSA---IDKYHAVMTVNA---IGAAENDLVPPP 32 6239.B0554.2_from_192_to_300 98.9% 11.8% CLPTSITYGVGDNQIPEIMIDVGYSDYATTLVAG-STDTTSTM-KISCSA---IAGYITNMDVNN--GLGPAENDVVPPP 33 6239.B0554.4_from_186_to_294 98.9% 10.9% CSAKSLTYGVGDDLQPQQMIDVSYTDYVTTPVAG-STETTSSM-KITCSA---IAGYIAAMALNN---GLLEANENGALP 34 6239.B0554.2_from_314_to_422 98.9% 13.6% CSPTALTYGMGDGMNPEVQIGVTYTDFMTTATPG-TMDSVSTM-KITCSG---IAGYNVQMELDG--NTTPLENAGNPPP 35 6239.B0454.8_from_61_to_163 93.6% 13.8% CSPDTLVLGQGDNQNPEVAIDVTHSAVTTT-------AGTSSM-TITCSG---ATDFNVQMELNG--AFTPAENDQDPLP 36 6239.B0454.8_from_181_to_283 93.6% 11.9% CDPALITYGVGDDQTPEVAIDVTHSAVTTT-------AGVSSM-TITCSG---ADDFNVQMDLNG--AFTPVENNLDPPP 37 6239.B0454.8_from_531_to_637 98.9% 15.7% CNPEAVMLGVGDANQPQTMVDVTYSDFMSTPIAG-TADSTSTM-KISCSA---IDGYTVLMQLNA--QTIPLEGQFEPQE 38 6239.B0554.2_from_433_to_542 97.9% 13.4% CSPTAVTLGIGDGLTPQRFIDVTYSDFASTPITG-SLETTSTM-KITCTA---MPGYNVLMQLNSNPNSTPVENMGGL-P consensus/100% s............................................h.C................................ consensus/90% s..ss...............ts..sth..........tts..h..htC.s....st..h.h.hts............... consensus/80% Ctsss.h.h...........sst.sshhsh.....t.pss..h.phsCtu....ss..s.h.hss........s...ss. consensus/70% Csssshh.shs.s.......ssshsshhsh.h...s.ssstsh.ploCpu...hss.ss.hhhss........sthsss. cov pid 81 . 1 . . ] 127 1 6239.F53B7.5_from_2191_to_2284 100.0% 100.0% ------TSTVVTC--TAASTWD-------------WYGSAVGYA-SC 2 6239.Y37F4.8_from_62_to_152 90.4% 16.0% ------QTIQLIC--NDQGQWEFR---------HSKLILTVNSL-TC 3 6239.F53B7.5_from_618_to_703 87.2% 18.4% --T---VNRTFTC--TKNSKWL-----------DTTTNSIVNNI-SC 4 6239.F53B7.5_from_1847_to_1936 91.5% 19.4% -DM---INMTFTC--NSMSNWQ------------TSAGIVFSSL-SC 5 6239.F53B7.5_from_925_to_1013 90.4% 18.4% -AN---ANLTLTC--NKAGMWV------------TGSLQTVESI-SC 6 6239.F53B7.5_from_1150_to_1240 92.6% 24.5% -GS---VSFNFTC--NSAASWM------------TAAGTIVDSV-AC 7 6239.F53B7.5_from_2312_to_2414 92.6% 16.4% ------INMTLTC--NSNAQWVITAISASTSGTSAALGTVVDDL-KC 8 6239.F53B7.5_from_2077_to_2173 91.5% 14.3% ------TNMTLNC--NSASQWVVS----SASGTGIPVGTVITSI-AC 9 6239.F53B7.5_from_1618_to_1708 92.6% 19.4% -NV---NYTDFAC--NSQGQWTS------------STFGVVTSV-IC 10 6239.F53B7.5_from_1389_to_1479 92.6% 20.4% -GS---TTANLTC--NADSQWI------------GRTSTAITSL-AC 11 6239.F53B7.5_from_2562_to_2651 91.5% 17.3% -GS---TFMTLTC--NSNSQWV------------TPDGTVITSL-SC 12 6239.Y37H2A.10_from_47_to_138 90.4% 17.8% -GS---IQTVLTC---VNGVWD-------------KGGYEINEV-EC 13 6239.T21B4.3_from_56_to_148 91.5% 20.8% -GS---LNVLLNC---VDGAWV-------------RGGLVIDEI-LC 14 6239.K02E7.1b_from_41_to_140 91.5% 19.4% VQALSTASAVIDC---VDGHWE-------------KDTIEINDI-EC 15 6239.R07B1.6_from_37_to_132 91.5% 19.2% -GT---ANVVMNC---VNGQWV-------------KEGIVINDV-EC 16 6239.F53B7.5_from_1954_to_2048 100.0% 38.9% ------IVLTMTC--SSSGQWM-------------RNGIGVETV-AC 17 6239.F53B7.5_from_2434_to_2530 97.9% 28.3% YGQ---VATSMAC--SSSNTWQ-------------RNGIEIDGV-AC 18 6239.F53B7.5_from_812_to_900 88.3% 14.0% -GE---LAMDLVC---TNGEYVYE-------------GKQISTV-SC 19 6239.F53B7.5_from_1732_to_1820 90.4% 17.3% ------VEVSLQC--TNNAVWMYE-------------NTQYSTA-SC 20 6239.F53B7.5_from_1029_to_1120 91.5% 19.0% -GI---LEISLNC--SSDGTWRYT-------------GSVINSV-SC 21 6239.F53B7.5_from_1500_to_1591 91.5% 19.0% -AT---HTLELAC--DSSAAWIYK-------------TTTVNNV-GC 22 6239.F53B7.5_from_1273_to_1361 89.4% 25.3% -AV---HSFSIVC--DSNANWIYD-------------ITSVSTV-SC 23 6239.C09G9.3_from_190_to_279 85.1% 8.7% -NT---ATVQLIC---SSGQWTYT---------RMGSTLVLTTV-EC 24 6239.R07B1.7_from_50_to_131 83.0% 17.3% -NT---FTTILNC--NDDMQWT---------------------L-SG 25 6239.F40H6.5_from_1195_to_1283 84.0% 13.5% -VIDGYLEITLDCLPDSEGVWTFG-------------GREITAI-SC 26 6239.C30G12.4_from_160_to_251 88.3% 16.5% ------INALANC---VDGNWVYT---------SGGVSRIVTQV-SC 27 6239.F56H9.6_from_131_to_238 96.8% 17.1% -QT---ISITLVC-TSDTMVWNYE-----VTINGVTYTRAVSSV-TC 28 6239.B0554.4_from_417_to_520 94.7% 11.0% -QT---VTINAEC-SNVDSIWYYI-----SELGGLPVKKPLSEV-LC 29 6239.B0554.2_from_81_to_185 96.8% 8.3% -QT---VTINAEC-SSVDMVWYYV-----TTIGGQTISRSMNSI-TC 30 6239.B0554.4_from_77_to_181 96.8% 11.1% -QT---VTINAEC-NSADMVWYYV-----TTVNGETVKKSMSSI-SC 31 6239.B0554.4_from_307_to_412 97.9% 10.2% -QT---VTINAEC-SSVDMIWYYV-----STVGG--TRRVMDSV-TC 32 6239.B0554.2_from_192_to_300 98.9% 11.8% -QT---VAINAEC-SSVDSIWNYV-----TVVAGQTVKVPMTSA-TC 33 6239.B0554.4_from_186_to_294 98.9% 10.9% -QT---ITITAEC-SSVDSVWNYV-----TVLQGETYRIPMTGLTTC 34 6239.B0554.2_from_314_to_422 98.9% 13.6% -QT---VTINAVC-NSADMIWKYV-----SNVGGVPTSLDITTV-TC 35 6239.B0454.8_from_61_to_163 93.6% 13.8% -QT---VTINAQC-NTADMKWNYV-----TVINGETFTEPLDSV-TC 36 6239.B0454.8_from_181_to_283 93.6% 11.9% -QT---VTINAQC-NTADMIWNYV-----TMVNGQPSTQALDSV-TC 37 6239.B0454.8_from_531_to_637 98.9% 15.7% ------VTITVTC-NSADMTWTYT-----ADAGTGPVTIDVNSV-RC 38 6239.B0554.2_from_433_to_542 97.9% 13.4% -QS---VTITLTC-NSADMIWNYV-----VEFMGAPFPRAITSM-AC consensus/100% ........h.h.C.......a......................h..s consensus/90% ......hth.h.C...st..W...................hsth.tC consensus/80% ......hshshtC..sss..W................th.hssl.tC consensus/70% .t....hshshsC..sssu.W................shslssl.sC