cov pid 1 [ . . . . : . . . 80 1 O28859/26-134 100.0% 100.0% RILGFLGILLVMLII---------------PVHGAVIVV----------PDNKTIQEVIDSA------SDGDTVVV---- 2 O28859/135-290 89.7% 9.0% PLNGDPSDHVNISNNVFYNLY-----GGIQIEDSNYTVV------RDNNITAVETGVYI----------YGSSYFN---- 3 O28859/405-511 91.6% 23.3% YSNSSIMSFTT-------------------IRNPKTWYV------DDDGQNCSADFASIQDAVNAS--IDGDTIVV---- 4 O28859/518-679 92.5% 7.6% IKVGYTTYEITGLGDC----------TQITDFESTDNVI--------RNNRFVNGGVVL---------VKGYISSGS--- 5 O28859/810-928 87.9% 9.8% NSHGIILYNTSHS-----------------AIESVGAYY----NHLAGLAAYYSSNITITNSTFE---WNGDRNE----- 6 O28859/929-103 72.9% 9.3% ESEGNTI---------------------------TSSYI-------------KAKKVPIHGA------WRGGQKY----- 7 Q50244/13-124 95.3% 25.6% ILLGIFLILSLISG----------------IGSAAEIIV----------QPGDSIQAAIDSS------KSGDTITI---- 8 Q50244/139-296 89.7% 8.9% NGYGIRIVSSNRCTVSKNTVL---------NNGVYGIYL----------GSCSNNTISGNTATND---NRGIHVGSADDN 9 P27373/52-190 94.4% 10.3% IIVGPGNYTENILVNKSLT-----------LKSNGSAII--------NAVSSEKSTITIKANNVW---IEGFIIIG---- 10 P27373/194-351 86.9% 7.5% KFEGNNIIENNRIINA---------------TGYGGIYL------FRPSNNKICRNYIANVSSGGGG-MSGAICIDVSDY 11 O26812/357-492 91.6% 9.0% ILVGEGNYTENIVLNKPLTL----------KANGLVNII---------ASTSTGTVIDVKANDTR---IEGFTIQG---- 12 O26812/504-672 99.1% 8.8% ETVGFLAIINGTNVTIKDITVS--------NNSQGILIV-------TSSDCTIQNTTILNN-------RHGIYLWN---- 13 O26812/700-844 86.9% 8.2% TAIGTNKQGYGIVPLN--------------GDTVQDNIV---TNCNYGIWPFNAQRCTITGNNVTGC-NYGLYVTGG-SN 14 O29964/61-232 89.7% 9.6% HIRGAQGVAVTKSEILNSAS-----IGIHVEFSDNALVY---ENVVRNADVGIKIANSFASDIAHNR-VTGCNI------ 15 P19843/47-187 96.3% 8.3% LPAGEYQGQFTIEQPMQ-------------LRCEPGAVI---------QSQGQGSSLLISAPDVL---VEGCTLYE---- 16 P19843/193-368 100.0% 6.8% HLEGNVIEDVRYGVHYMFANENSLI-DNVTRRTRTGYAL---------MQSRKLTVTGNRSEQDQ---NYGILMNY---- 17 O31383/41-189 96.3% 8.5% ARDGDVVELAPGDYNGSIRID-----RPLALTGRPGAVL---------DGGGSGNVVTVTAPDVT---VRGVTIRG---- 18 O31383/195-388 100.0% 6.7% RFVGNRFEQVRFAVHYMYTNDSEVS-GNVSIGNHVGYAI---------MYSNRLIIRDNISDRDR---DHGLLFNYANYG 19 O68478/37-185 90.7% 11.9% AQPGDVLVLTDGAYDGPVTID-----RPLTITGPRGAVV---------NGLKQGSVVTIAASDVT---LTGFTVTG---- 20 O68478/191-352 100.0% 8.0% IYRRNIMRDLRFAVHFMYTRNTEVS-DNISIGNHLGFAI---------MFSNRAKILNNLSLGDR---EHGLMLNYANN- 21 Q52899/44-191 89.7% 8.8% ASPGDVIVLQ-GEHQGPVTID-----KTLTLEGEPGALV---------MGNGKGSVITVKAPQSI---VRGLEVRG---- 22 Q52899/197-392 100.0% 6.1% VFRGNRFRELRFAVHYMYTNDSEIS-DNVSTGNAVGYAI---------MYSDRLKIKGNRSDGDR---DHGLLLNYANN- 23 Q9XCX0/37-185 90.7% 11.3% AAPGDVLILAPGRHEGPVLLD-----RPLTLLGREGAVV---------DGGGRGSVLTVTAPDVR---IAGLEIRG---- 24 Q9XCX0/191-352 100.0% 6.8% IFRGNRMRNLRFAIHYMYAHHSEVT-GNISIGNHLGYAL---------MYSHHLTVTDNLSLRDR---DHGVMLNYVNN- 25 Q9R9K8/39-187 90.7% 8.8% AAPGDVLRLRDGVHAGPVTID-----RPLTITGTRAAVV---------DGQGQGTVVTVAAPDVT---LRGFSVTG---- 26 Q9R9K8/193-354 100.0% 7.4% FYRDSLFRGLRFAVRFMYTRNTEVS-GNVSIGNHLGFAI---------MFSDRAVIRDNRSLGDR---EHGLMLNYANN- 27 Q9F0W3/36-188 90.7% 8.6% LPLGAEGEQHWRLPAGHYQGSFSID-QPMTLTCAPEAVF---------EAQGEGNGLIIRAPNVQ---VQGCTFLD---- 28 Q9F0W3/194-368 100.0% 6.9% LLQGNTLEDLRYGVHYMFANDNRLL-DNVTRRTRTGYAL---------MQSRQLTVIGNRSEQDQ---NYGILMNY---- 29 Q9K0L5/85-254 98.1% 5.5% IFSNNRFSDLRFAVHYMYTNDSEIS-GNISVGNNMGYVL--------MFSSERLKVFDNIAVGSR---DQGIMLNY---- 30 Q9HYL1/38-187 95.3% 9.0% RADGDGRWSLAAGRYAGNFVID----RPLHLRCEAGAEL---------DGGGHGSLLTLTSPGIT---VEGCRLRN---- 31 Q9HYL1/193-367 100.0% 9.1% SIEANRFEELRYGVHYMFTHNSRVT-DNLTRRTRTGYAL---------MQSRKLTVTGNRSIDDE---NYGILMNY---- 32 Q9BZQ2_448 91.6% 8.8% REFGKTITHIVAKMMTTEMIKDLSSDTLLQQHGDLDLAL---------DNCYSGDTVII---------FPGEYQAA---- 33 Q9NE58_627 90.7% 7.3% RHVGRFCFKLLKLDTNLHQTDANAMTSAPAKKPSRPTAV----SITGGEWRLHKCRISCVE-------GSGVTVGG---- 34 Q9NE58_824 83.2% 11.2% AGCGIVVKGASAVPSVIRKNRVL-------SNVQAGVFC-------------CDKAAPFVSDNEIR--QNGKA------- 35 Q9VH60_673 90.7% 8.2% YAQGTYEHNEISR-----------------NALAGIWVK-------NFASPIMRENHIHHGR------DVGIFTF----- 36 Q9VH60_857 90.7% 8.2% KGQGLIEENEVYS-----------------NTLAGVWIT-------TGSTPVLRRNRIHSGK------QVGVYFY----- 37 Q9UK96_357 96.3% 8.6% GSDGERVAQTPDSSDGGGLSPSG------EDEDEDQLMY--------------RLSYQVQGPR-----PVGPRPVL---- 38 Q9H6V8_47 86.9% 7.6% AMAGVWIKTDSN------------------PTLRRNKIH----------DGRDGGTCIFNG-------GRGLLEEN---- 39 Q9K3N6_62 78.5% 9.7% VAPGTYRENLVVQRAVTLRGPE--------GAQGSVRIA-------PADGVPLTVRASAVIQDLH---VEGQDAAA---- 40 Q9K3N6_334 92.5% 12.4% VSDGATAVLDSCRVHDVPDALFVL------DRGSRVDVV------DSDLSQVRNTAVSV---------SDGATAQL---- 41 Q51371_262 94.4% 9.0% KAYGISISQYSPGMDKQM-----------KRPRPKGWVI------DSTIVDSWYGFYCYEADDLV---VKGNTYRD---- 42 Q44496_9 100.0% 7.3% GALGDGASDDTAAIQAAIDAA---------HAAGGGTVYLPAGEYRVSGGEEPSDGALTIKSNVY---IVGAGMGE---T 43 Q44496_216 99.1% 8.7% GNGGAGLVVQRGSYDLPHPYD---------ILIDGGAYY---DNALEGVQLKMTHDVTLQNAE-----IYGNGLYG---- 44 Q44496_851 100.0% 7.8% GALGDGASDDRPAIQAAIDAA---------YAAGGGTVYLPAGEYRVSPTGDPGDGCLMLKDGVY---LVGAGMGE---T 45 Q44496_1058 99.1% 6.6% GNGGAGLVIQRGAEDLAQPTD---------ILIDGGAYY---DNALEGVLLKMTNNITLQNAE-----IYGNGYSG---- 46 S49901_32 92.5% 8.0% HSLGTVFFLTCGFSAYSGVQS---------NTPIPKPVC-DASKEISVRYSSTSQRIYLES-------VDGSRGGC--AS 47 S49901_271 97.2% 8.8% LYYGHYGYRQSFALLSR-------------NSVYNNEVY-------GFDPHDDSVNITISHNDVYSNFNHGVIWSK--YC 48 Q9RKE0_52 100.0% 7.6% PFAGIQRALDVAGPRST-------------VHLAPGRYL--------QDFVSRSPGVTLTGPPSAVVQGSGEGRAV---- 49 P94409_226 88.8% 7.1% YGEGDVDYEEPIN-----------------VSIRNNHFV---GNVSSSVTNFNGYGILIEGNHSDNTISYGYGTQT---- 50 O05692_43 92.5% 9.5% LAAGSVFNEQFD------------------LKYSGSIAA------PITIGSYGVGDAPVIHSS-----GDGIHTSN--AS 51 O05692_206 92.5% 7.6% TPKGVIALVRAVN-----------------AVIEDNTLV----GGGFGVSAQAGTNIAIH--------DNGTNIAI---- 52 O01335_397 100.0% 11.0% GEVGISISTDQKVTIRRSSSY---------SNKATGIYV--------GTSEITIENVVVNANG-----FYGIHAEV---- 53 Q9RJJ9_176 84.1% 8.2% RNSGAGLMAGD-------------------RQQVRASCL------------RDNGQYGINAYK-----GDGVINDL---- 54 P94576_72 93.5% 10.4% IREGTYHETLDVKHSGTDGKPITF------RNYENENVV--ISGESVANAEYETPLIRIHDKHDIA--ISGLTIQD---- 55 Q9L162_55 91.6% 8.1% VTTGTYRESVKVSTPRLTL-----------RGMGRSTVI-----------RPSTQKAAANTCA-----EGGNGICA---- 56 O28860_48 91.6% 9.0% IESGIYRENLVIQKSL--------------RILGDGAVI-----EPEFRHLPVISVFGVDSFS-----LEGVEIKN---- 57 O69812_310 84.1% 7.5% AVTGIYVSSGSGNPLQDIAVTGNTVR----GTGTGGAIV------VSNTGTGRNSSVVVSDNL-----VRGVDGET---- 58 Q9PH27_121 91.6% 7.6% HLIGTTNVEHEFMPERPYLSNSVVVLRAAHNVSLLDLKV-SQCRSACLLSEYDSHTLNIERND-----VSGATWD----- 59 Q985L9_163 95.3% 8.6% GKNGLALEHATGRIERSDI-----------SGAADAGIY-----------SVEAAGLAISGNTVSDCANGGILVHR---- 60 Q9F2K6_259 88.8% 6.9% PPRGIRITACHTEDNRYGISDWGADG----LLVTGCSML-----------GNHVAGFDVSAQGTTSVGGRGGLVTG---- 61 Q9HQ54_287 85.0% 9.6% IESGHLDRVVRVSDIDVHGVDG--------DGIGVRRAI-------------DLDDVVLDDNT-----VRGAAR------ 62 O22149_236 99.1% 9.0% VKQGVYSENLERKKNVMLR-----------GDGIGKTII--TGSKSVGGGTTTFNSATVAAV------GDGFIARG---- 63 P07863_85 83.2% 5.4% SRNGAVIAAATAAGTLKSDGSKWGTAG------SSTITI--------SAKDFSAQSLTIRNDDFDFPANQAKSDSD--SS 64 Q9K5A2_162 88.8% 10.3% KGNGTTLNTSAIQKAIDACPSGC------QVNVPAGVFK--------TGALWLKSNMTLNL-------SPGATLLG---- 65 Q9K5A2_311 78.5% 8.5% RAKGIDLKTAYRQYRSSLIT----------LRGANNVYI-----ADITIRNPADHGIVFMK-------ENGVIHQT---- 66 P39116_156 79.4% 4.0% GTNAKVVG--------------------------GNFQI--------KSDNVIIRNIEFQDAYDYFP-QWDPTDGSWNSQ consensus/100% ...t..................................h...............................s......... consensus/90% ...G.................................hh.................h.............G......... consensus/80% h..G.hh....h.......................shhh...............t.h.h.t.........G.hh...... consensus/70% hh.G.hh.t.tht..................t.tsshhl...........t.ttpshshps........tGhhht..... cov pid 81 . 1 . . . . : . 160 1 O28859/26-134 100.0% 100.0% -----------RDGVYS-------------------------------------VYLNITKSITLRS------------- 2 O28859/135-290 89.7% 9.0% TIVNNTIRDATSYGINMGS------------------------------GRESEIYLNRFINNSVNARD----------- 3 O28859/405-511 91.6% 23.3% -----------CNGTYV---------------------------------------ENIVVNRTLNI------------- 4 O28859/518-679 92.5% 7.6% -------NRNTITGNIFESSMVTIEQSSYN-------------------EISFNTFLNQTSYGYIVVEGAQYRKASHNT- 5 O28859/810-928 87.9% 9.8% -----------AAGVFLG------------------------------------KSENVAVEKSEINSNW---------- 6 O28859/929-103 72.9% 9.3% -------------GIHSTS------------------------------SSGNLIYNNYFFNHSVNAYD----------- 7 Q50244/13-124 95.3% 25.6% -----------KPGTYTEN-------------------------------------VNITKSSLLIRS------------ 8 Q50244/139-296 89.7% 8.9% TISDNTVTSNNILGMYVCGL-----------------------------SDRNLIYNNYFNNTNITIKN----------- 9 P27373/52-190 94.4% 10.3% ----------GKNGIYMENVTGCTI--------------------------TNNTIQNAFVSGWEYYG------------ 10 P27373/194-351 86.9% 7.5% NIVKDNIGINCDGGLFTDGMIGNEITNNIFKNCKVAVSESTYGP----ASRNNKIYGNYFINYETAISD----------- 11 O26812/357-492 91.6% 9.0% --------ANGTNGKGINIDTQYRC----------------------------TLINNTVINN----------------- 12 O26812/504-672 99.1% 8.8% -----------STGITIKTSTITNTQANAIIAYK---------------QNNNLIIENNTIMNSSNAIYL---------- 13 O26812/700-844 86.9% 8.2% HTIIGNIIKENSKGIRLTGTGTG-------------------------ASTGNMIYDNYFINNTNQ-------------- 14 O29964/61-232 89.7% 9.6% -------------GIYTAKYKVFYGDWPYIGLKNVY-------------LKNVYIYDNYLKNHQNIGGLAANPAT----- 15 P19843/47-187 96.3% 8.3% ------------WGSDLTAMDSAVFILPA---------------------AERAQISNNRMRGP---------------- 16 P19843/193-368 100.0% 6.8% ------ITYSTITGNFVSDVQRGDTGGDS---------------MISGGEGKALFIYNSLFNTIENNHFEKS-------- 17 O31383/41-189 96.3% 8.5% ------------SGRDLQAMNSGVFLQKT---------------------AERATIENNRLVGN---------------- 18 O31383/195-388 100.0% 6.7% RDRRNRVTGGLLDTCPAGSEEGPDDERGMIPDTKREQ-------SLRSGPEKCVFIYNTNHNRFRNNWFERC-------- 19 O68478/37-185 90.7% 11.9% ------------SGRINQDLDAGVKIVQG---------------ADRARVEKLLVTDN---------------------- 20 O68478/191-352 100.0% 8.0% ---------ADVSGNLVR-----------------------------GGTKKCLFIYNAHKNLVWGNRFESC-------- 21 Q52899/44-191 89.7% 8.8% ------------SGKDLYGMDSGIFVAQT---------------ASGARVEKNTIIGN---------------------- 22 Q52899/197-392 100.0% 6.1% ----SRITGNIVVGRLQPADRWLKARSSGHGVPKTDEENQTAGADRRLGPEKCVFIYNANKNRFRDNVFEGC-------- 23 Q9XCX0/37-185 90.7% 11.3% ------------SGSSHEEIDAGVRLLKG---------------AKRPVVEDNRLFGN---------------------- 24 Q9XCX0/191-352 100.0% 6.8% ---------AEVARNLVR-----------------------------GGTGKCTFIYNAHRNVIHDNRFEGC-------- 25 Q9R9K8/39-187 90.7% 8.8% ------------SGMANKDLDAGVKIVKG---------------ADRAQVRELRLTEN---------------------- 26 Q9R9K8/193-354 100.0% 7.4% ---------ADVTGNLIR-----------------------------GGTKKCLFIYNAHKNLIWDNRFQDC-------- 27 Q9F0W3/36-188 90.7% 8.6% ------------WGHDLTAMNSAVFIQPG---------------ATGAVVRGNRMQGQ---------------------- 28 Q9F0W3/194-368 100.0% 6.9% -ITYSTLRDNFVSDVRDGSTGDTMISGAE---------------------GKALFIYNSLFNRIEGNHFERS-------- 29 Q9K0L5/85-254 98.1% 5.5% -VNYSDIHDNIINKA-----------------------------------GKCVFAYNANYDKLSANHFENC-------- 30 Q9HYL1/38-187 95.3% 9.0% ------------WGRNLTELDAAIFVGKA--------------------ASGAVIRGNDLRGA----------------- 31 Q9HYL1/193-367 100.0% 9.1% -ITYSTLAGNRVEGVRSGSTGDAMISGAE---------------------GKALFIYNSLFNRIEGNSFADS-------- 32 Q9BZQ2_448 91.6% 8.8% -NLALLTDDIIIKGVGKREEIMITSEPSR-------------------DSFVVSKADNVKLMHLSLIQQGT--------- 33 Q9NE58_627 90.7% 7.3% ---SKHTPSSATNGQNPSATGARSSRPPQSPSLVA-------RSSLVNGADEGAEDADVMSMEPIITKCSFIDVT----- 34 Q9NE58_824 83.2% 11.2% -------------GVLVKTTAAPKI------------------------------TRNVIESGK---------------- 35 Q9VH60_673 90.7% 8.2% -----------ENGMGYFEKNDIHNNRIAGFEVKA--------------------GANPTVVKCEIHHGQ---------- 36 Q9VH60_857 90.7% 8.2% -----------DNGHGKLEDNDIFNHLYSGVQIRT--------------------GSNPVIRGNKIWGGQ---------- 37 Q9UK96_357 96.3% 8.6% ---GGSFLGPPLPGASIQLPSCLVLNSLQ---------------QELQKDKEAMALANSVQGCLIRKCLFRDG------- 38 Q9H6V8_47 86.9% 7.6% -----DIFRNAQAGVLISTNSHPIL------------------------------RKNRIFDGF---------------- 39 Q9K3N6_62 78.5% 9.7% PAVLVEDGTPELLGLRVVARS----------------------------------------------------------- 40 Q9K3N6_334 92.5% 12.4% ---DDCRIRDAATGAWFRDHGSGGTLNNC------------------------TLDGNRTGVIVTKGADPTIERCTVDLP 41 Q51371_262 94.4% 9.0% ---------NIVYGIDPHDRSHRLIIADN-----------TVHGTRKKHGIIVSREVNDSFIFNNRSYENK--------- 42 Q44496_9 100.0% 7.3% VIKMVDGWTQNVTGMVRSAYGEE------------------TSNFGMSDLTLDGNRDNLSAKVDGWFNGYIPG------- 43 Q44496_216 99.1% 8.7% ---------VRVYGAQDVQLLDNQI------------------------------HDNSQNGAYAEVLLQSYDDTAG--- 44 Q44496_851 100.0% 7.8% VIKLIDGSDQKITGMVRSAYGEE------------------TSNFGMSDLTLDGNRDNTSGKVDGWFNGYIPG------- 45 Q44496_1058 99.1% 6.6% ---------VRLYGTEDVQILNNQI------------------------------HDNAQNVAYAEVLLQSF-------N 46 S49901_32 92.5% 8.0% PTMVYEALGDASPLFPLETSGEWML--------------------TETLHILDGITLNLGYGTD---------------- 47 S49901_271 97.2% 8.8% HNAVVTNNHHDNGGVGIFAHFVSDNAYIS----------------------HNTIENNGDSGIAFLES------------ 48 Q9RKE0_52 100.0% 7.6% --GEIQHDRVRLTGFTIDGLVGDATEKSDYRKKLL----------YVMGLTPGDGVDGLRITRMTFR------------- 49 P94409_226 88.8% 7.1% ----------VIKGNILRRPEDAAAAPRVGITGL--------GVSQGKETSDAVIAGNLITGF----------------- 50 O05692_43 92.5% 9.5% NIVIENIKISDTSGAAIY-----------------------------AANVWNWTVRNVEVENTGSST------------ 51 O05692_206 92.5% 7.6% ----HDNDISGYGGYSWSYAIGLGDQ---------------------GDTKNYDISGNYIHDG----------------- 52 O01335_397 100.0% 11.0% ------EKRFEMDGVNVSAHRGEFALELF------------------MSGNAKIGIANSRFHDNKKG------------- 53 Q9RJJ9_176 84.1% 8.2% -----VLEGNEITGNNTGDWERRRPGCGC------------TGGVKFWAVQGADVRGNWVHHNR---------------- 54 P94576_72 93.5% 10.4% --LSVSSEEATAIGIYVSGSS-----------------------------SHIAIKDNHIRGIKTTADEGN--------- 55 Q9L162_55 91.6% 8.1% ----IGTKDENVKGITVSDLTVTGFTRTG----------------VFSMATDGLTVRNVNAVKNG--------------- 56 O28860_48 91.6% 9.0% ----------GSVGMEIRFVNNLSIKKSS-------------------------FFNNFEGIKAFSIGSGRLEGLSFSGF 57 O69812_310 84.1% 7.5% -------------GIYVGQTDGATVTGNT------------------VATTRHPSGGN---------------------- 58 Q9PH27_121 91.6% 7.6% -------------GVSFNRSTHVR-------------------------LVNNVIHDNVAAGITTEHLE--------DSE 59 Q985L9_163 95.3% 8.6% -------WQAAEDGTMVTGNRVERIGARS------------------GGTGQNGNGINAFRAGNVI-------------- 60 Q9F2K6_259 88.8% 6.9% ----CVIDGNAGDGIALGNTPGPYGFH------------------------GNRVSNNGRYGYWEHN------------- 61 Q9HQ54_287 85.0% 9.6% -------------GIALTHRRAQRQPPHV----------------------SVAVTNNTLRETV---------------- 62 O22149_236 99.1% 9.0% ------ITFRNTAGASNEQAVALRSGSDL---------SVFYQCSFEAYQDTLYVHSNRQFYRDCD-------------- 63 P07863_85 83.2% 5.4% KIKDTQAVALYVTKSGDRAYFKDVSLV----------------------------GYQDTLYV----------------- 64 Q9K5A2_162 88.8% 10.3% -----SENAADYPGGYTIGKSSTDM--------------------------RPASLLNVTDKTSS--------------- 65 Q9K5A2_311 78.5% 8.5% --------FDANNGDGVEFSNSPD-----------------------------ITVLNSVF------------------- 66 P39116_156 79.4% 4.0% YDNITI-----NGG--THIWIDHCTFNDGSR----------PDSTSPKYYGRKYQHHDGQTDA----------------- consensus/100% ................................................................................ consensus/90% .............G...........................................N...................... consensus/80% .............Gh..t.....................................h.N...................... consensus/70% .............Gh.htt...................................hh.N..h.h................. cov pid 161 . . . 2 . . . . 240 1 O28859/26-134 100.0% 100.0% ENGTANCILEA-----------------STNDDVIEVHADFVT------ITGFTIRNGN--------------------- 2 O28859/135-290 89.7% 9.0% -CGRNH-----------------------WNSTEMHQYAYQGNVFT--NYTGNYWDDYVGADSNGDGIGDTPYNISSEWC 3 O28859/405-511 91.6% 23.3% -TGMGNPVVEA------------------NNSGSGFTLKSNGNI-----IQGFTIKNA---------------------- 4 O28859/518-679 92.5% 7.6% IHGNRF--------------------VKYYQSTMPAIWIKSYADYT--NISGNILEGYGGIAVSSNGCVIADNI------ 5 O28859/810-928 87.9% 9.8% CYGIEFSYSSNN-------------TVRGANIT----------------DNGPYIEFSPIADDCYSG------------- 6 O28859/929-103 72.9% 9.3% -TGNNR-----------------------WNVTPTAD----ENIIGGPYLGGNYWHDYAGEDVAGGDGLGDTLLPYN--- 7 Q50244/13-124 95.3% 25.6% ESGNPDETIIKAKSS-------------SSNALSMQAWNVT--------IKGIKTIGASGSS------------------ 8 Q50244/139-296 89.7% 8.9% GTGNA------------------------YNTAKASG----KNIVGGTYIGGNFWGKPDGSGFSNKATDTDRDGISDSAY 9 P27373/52-190 94.4% 10.3% GNGICLVNSTNN--------------TITNNIIRNNT------------WNGINVCESKGNIIKNNTIMYSG-------- 10 P27373/194-351 86.9% 7.5% PKGELVDN--------------------IWNTT----------------EGGNYWSNYTGNNTGD--------------- 11 O26812/357-492 91.6% 9.0% YYGIYIKDSEGC--------------QLHNNRLQDNLL-----------NFGVFDTVSTDGSKFNQEIDTSNT------- 12 O26812/504-672 99.1% 8.8% YNGVTSTIQYNN----VQGSTYGIYVSGDGNNTIAYNNITSGGLL----VYGANNIVTDNIVNPGTVRSVIY-------- 13 O26812/700-844 86.9% 8.2% TEGNPSNN--------------------NWNTT----------------GGGNYWSDYTGDDLDGDGIGDTP-------- 14 O29964/61-232 89.7% 9.6% DPGDL------------------------ENVNLFTQKTPGTNIIGGPYFGGNFYSTPSGNGYSDLCVDADVDGLCDQPF 15 P19843/47-187 96.3% 8.3% GFGVFVDGTRDV--------------QVIGNEIDGDAGVRSQDR-----GNGIHLFAVSGARVLHNHVRNA--------- 16 P19843/193-368 100.0% 6.8% SLGIHLTAGSEDNRISGN--------AFVGNQQQVKYVASRTQE-WSVDGRGNYWSDYLGWDRN---------------- 17 O31383/41-189 96.3% 8.5% LFGVYVHGATGS--------------RVANNLIEGLRGHRLSEA-----GNGVSLWNAPEVTIADNTFRYG--------- 18 O31383/195-388 100.0% 6.7% AIGVHFTAGSEGNEITGN--------AFVGNRNQVKYVGTRNLD-WSKGGRGNYWSDNPAFDLD---------------- 19 O68478/37-185 90.7% 11.9% MHGIDVHGGRDT--------------IVSGNEIIGTRSARMNER-----GNGIYVWNSPGTLLQDNIIRYG--------- 20 O68478/191-352 100.0% 8.0% GIGIHFTAGSEKNVLTGN--------AFIANREQVKYVGTRNME-WSHEGRGNFWSDHPAFDLN---------------- 21 Q52899/44-191 89.7% 8.8% LVGIYLHGARDS--------------WALGNRIIGLREGRISEA-----GDGISVWNAPGARVVDNDVSYG--------- 22 Q52899/197-392 100.0% 6.1% AIGIHFTAGSEGNLISSN--------SFINNRNQVKYVGTRHLD-WSSEGQGNYWSDNPAFDLD---------------- 23 Q9XCX0/37-185 90.7% 11.3% LVGVDIHGATDA--------------RVSRNLIVGREDARMNAR-----GNGIYVWNAPGLIVEENDISLG--------- 24 Q9XCX0/191-352 100.0% 6.8% GTGIHFTAGSERNMLTGN--------AFVGNRTQVKHVGTKLVE-WSHEGRGNFWSDHPAYDLD---------------- 25 Q9R9K8/39-187 90.7% 8.8% MHGIDVHGGRDA--------------QVVDNEIIGTRDPRMNER-----GNGIYVWNSPGTLVQGNSVRYG--------- 26 Q9R9K8/193-354 100.0% 7.4% GIGIHFTAGSERNVLSGN--------AFIGNREQAKYVGTRHIE-WSHEGRGNFWSDHPGFDLN---------------- 27 Q9F0W3/36-188 90.7% 8.6% GFGIWVDGTRDV--------------SLIDNRIQGDPSLRSQDR-----GNGIHLYAVHGARVIGNQVRET--------- 28 Q9F0W3/194-368 100.0% 6.9% AVGIHLTAGSEDNRIAGN--------AFVHNQRQVKYVATRLQE-WSADGRGNYWSDYLGWDRN---------------- 29 Q9K0L5/85-254 98.1% 5.5% QIGIHFTAAIEGTSLHDN--------SFINNESQVKYVSTRFLD-WSEGGHGNYWSDNSAFDLN---------------- 30 Q9HYL1/38-187 95.3% 9.0% GFGVWLDATVGA--------------QVLDNRIEGDESVRSQDR-----GNGIHLYAVKDALVRGNRVSHT--------- 31 Q9HYL1/193-367 100.0% 9.1% ALGIHLTAGSEDNRIAGN--------AFIGNRQQVKYVASREQE-WSADGRGNYWSDYLGWDRD---------------- 32 Q9BZQ2_448 91.6% 8.8% VDGIVVVESGHM---------------TLENCILKCE------------GTGVCVLTGAALTITDSEITGAQ-------- 33 Q9NE58_627 90.7% 7.3% AAGIVVMEKSRG--------------LYEGNTFS---------------GCGFAAFLLRKDATPRIRANHITDGA----- 34 Q9NE58_824 83.2% 11.2% EAGIYIFEKGAG--------------IIEENRIRGNQ------------NAGLLVTTGGNPHVIHNTITKNA-------- 35 Q9VH60_673 90.7% 8.2% TGGIYVHENGLG--------------QFIENRIHSNN------------FAGVWITSNSNPTIRKNEIYNGH-------- 36 Q9VH60_857 90.7% 8.2% NGGVLVYNGGLG--------------LLEQNEIFDNA------------MAGVWIKTDSNPTLKRNKIYDGR-------- 37 Q9UK96_357 96.3% 8.6% KGGVFVCSHGRAKMEGNIFRNLTYAVRCIHNSKIIMLRNDIYRCR----ASGIFLRLEGGGLIAGNNIYHNA-------- 38 Q9H6V8_47 86.9% 7.6% AAGIEITNHATA--------------TLEGNQIFNNR------------FGGLFLASGVNVTMKDNKIMNNQDAIEKAV- 39 Q9K3N6_62 78.5% 9.7% ASGIEVRGGARP----------TVRRCTVDNPA----------------GVGIAVLDGGGGVFEECEVVAAG-------- 40 Q9K3N6_334 92.5% 12.4% EAGVYVSAGGRG---------------SFLNCRVTGSA-----------GYGFHVIDGCRTTLRKCRTERCA-------- 41 Q51371_262 94.4% 9.0% LSGIVLDRNSEG-------------NLVAYNEVYRNH------------SDGITLYESGDNLLWGNQVLANR-------- 42 Q44496_9 100.0% 7.3% QDGADRDVTLERVEIREMSGYGFDPHEQTINLTIRDSVAHDNG------LDGFVADYQVGGVFENNVSYNND-------- 43 Q44496_216 99.1% 8.7% VSGNFYVTTGTW---------------LEGNVISGSANSTFGIQER---ADGTDYSSLYANT------------------ 44 Q44496_851 100.0% 7.8% QDGADRNVTLERVEIREMSGYGFDPHEQTINLTIRDSVAHDNG------LDGFVADYLVDSVFENNVAYNND-------- 45 Q44496_1058 99.1% 6.6% DVGVSGNFYATT------------GTWIEGNVISGSANSTYGIEER---NDGTDYSSLYANTIDGV-------------- 46 S49901_32 92.5% 8.0% VGGDVDYIKLRSDSEMTVSIRAHGGSLDLLNTKVTSWDS----------SKGDVDTDWSDGRSFLSAISEVVLDASET-- 47 S49901_271 97.2% 8.8% SGGLVYNNTVRE-----NVHGIRFSVGSRQNVVAENTFEE---------NTGYDLYQYAGNDQVVEVDDGN--------- 48 Q9RKE0_52 100.0% 7.6% NAGEECVRLRYL----------VTGAEVAHNRITGCGVWDFRFA-----DGGKVGEGIYLGTAPEQQG------------ 49 P94409_226 88.8% 7.1% STGIDVRGKSVL---------------VTNNKISNFE------------NTGILVYQSSDVKVDGNQIQNGLS-ETRR-- 50 O05692_43 92.5% 9.5% KAGSVNFKSSQN--------------ITIENSTITGVT-----------GDGIWMEKVKGVTLLNNTVTN---------- 51 O05692_206 92.5% 7.6% VWGVSISAAGTP-------IYVRENIDVHDNVFEDLSSAALKVDRP---ASGSFHDNIIDSDVTPYSI------------ 52 O01335_397 100.0% 11.0% ENGKISISNNKF----------------TKNTMHDIVKLLESVP-----SSEIFITDNEFNQNLANSIITTN-------- 53 Q9RJJ9_176 84.1% 8.2% GTGLWADTNNND-------------FLIEDNVLEG--------------NDGAALIYETSYNAVVRENTIRRNNW----- 54 P94576_72 93.5% 10.4% AHGIAVYGTGSM-----------KDIRIEDNTVEKL-------------TLGASEAVVLNGNIDGFTVAGNVVRNNN--- 55 Q9L162_55 91.6% 8.1% VWGIAQERSVHG--------------VFRGNTARDNG------------DAGIFLANNIKAEEGAADTEGTLVAHNR--- 56 O28860_48 91.6% 9.0% FTGVSLEDSSLE----------------IENSSF---------------EGGAIAIAAESSRGVKLRNLEINT------- 57 O69812_310 84.1% 7.5% AQGIQLQGCPDA--------------LVTGNHLSDVD------------GDGIGVDSGSTGALIAQNTVLAPA------- 58 Q9PH27_121 91.6% 7.6% IRGNRLERNGSQGLYLADA----RRNVFKHNQFISNK------------KSGVLLTCSIRYRTPEVLCWDNSMSQANVFE 59 Q985L9_163 95.3% 8.6% ISGNVVSDCAFS----------AIRANSSSNLQISGNTCS---------RSGETAVYSEFSFEGAVISNNIVDGA----- 60 Q9F2K6_259 88.8% 6.9% LAGGDQEPATDI---------VLESNDIHDNAL-----------------DGVRVDAPLHEPAIVGNRIRGNGRRAAPRT 61 Q9HQ54_287 85.0% 9.6% GAGVSIDAQRLF----------VSRLDVRNNTVTGSG------------GDGVALHAPVLSGATIADNTVRGSHDRGVN- 62 O22149_236 99.1% 9.0% VYGTVDFIFGNA-----------AAVLQNCNIFARRPRSKTNTIT----AQGRSDPNQNTGIIIHNSRVTAASDLRP--- 63 P07863_85 83.2% 5.4% SGGRSFFSDC--------------RISGTVDFIFG---------------DGTALFNNCDLVSRYRADVKSGN------- 64 Q9K5A2_162 88.8% 10.3% KGGVF------------------------QNIRITGKGAID--------GSGWKRSADGQDELGNKLPQYVKSDNANVN- 65 Q9K5A2_311 78.5% 8.5% DTGDDC-----------------------INFA----------------ALGQEGQKQSPTQNARLFNNYFR-------- 66 P39116_156 79.4% 4.0% SNGANYITMSYN-----------YYHDHDKSSIF-----GSSDSKTSDDGKLKITLHHNRYKNIVQRAPRV--------- consensus/100% ..G...........................p................................................. consensus/90% ..G...........................N...................tG..h......................... consensus/80% ..G..........................tN.h.................tG.hh.t..t.................... consensus/70% .hGh.h.tttt..................tNth................tsG.hh.s..s.th................. cov pid 241 ] 248 1 O28859/26-134 100.0% 100.0% -DDGVDVE 2 O28859/135-290 89.7% 9.0% GEEGGGAD 3 O28859/405-511 91.6% 23.3% -SYGECYG 4 O28859/518-679 92.5% 7.6% -INGFTPI 5 O28859/810-928 87.9% 9.8% -GSGVKLY 6 O28859/929-103 72.9% 9.3% -SGGNIQN 7 Q50244/13-124 95.3% 25.6% -YSGIYMY 8 Q50244/139-296 89.7% 8.9% SIPGSIYI 9 P27373/52-190 94.4% 10.3% -GIGIYVW 10 P27373/194-351 86.9% 7.5% -GTGNIPY 11 O26812/357-492 91.6% 9.0% -INGNPVY 12 O26812/504-672 99.1% 8.8% -ISGNNNF 13 O26812/700-844 86.9% 8.2% -YQGDQKP 14 O29964/61-232 89.7% 9.6% -NAGYLVD 15 P19843/47-187 96.3% 8.3% -RDGIYID 16 P19843/193-368 100.0% 6.8% -NDGLGDI 17 O31383/41-189 96.3% 8.5% -RDGIFTI 18 O31383/195-388 100.0% 6.7% -GDGIADT 19 O68478/37-185 90.7% 11.9% -RDGIFSN 20 O68478/191-352 100.0% 8.0% -GDGVADS 21 Q52899/44-191 89.7% 8.8% -RDGIFSK 22 Q52899/197-392 100.0% 6.1% -GDGIGDN 23 Q9XCX0/37-185 90.7% 11.3% -RDGIFVN 24 Q9XCX0/191-352 100.0% 6.8% -GDGIADA 25 Q9R9K8/39-187 90.7% 8.8% -RDGIFSN 26 Q9R9K8/193-354 100.0% 7.4% -GDGIADG 27 Q9F0W3/36-188 90.7% 8.6% -RDGIYID 28 Q9F0W3/194-368 100.0% 6.9% -GDGLGDV 29 Q9K0L5/85-254 98.1% 5.5% -GDGFGDS 30 Q9HYL1/38-187 95.3% 9.0% -RDGVYID 31 Q9HYL1/193-367 100.0% 9.1% -DDGLGDV 32 Q9BZQ2_448 91.6% 8.8% -GAGVELY 33 Q9NE58_627 90.7% 7.3% -EAGIFCQ 34 Q9NE58_824 83.2% 11.2% -YEGIWVC 35 Q9VH60_673 90.7% 8.2% -QGGVYIF 36 Q9VH60_857 90.7% 8.2% -DGGICIF 37 Q9UK96_357 96.3% 8.6% -EAGVDIR 38 Q9H6V8_47 86.9% 7.6% -SRGQCLY 39 Q9K3N6_62 78.5% 9.7% -QAGVAVR 40 Q9K3N6_334 92.5% 12.4% -RGGYEFA 41 Q51371_262 94.4% 9.0% -RHGIRVR 42 Q44496_9 100.0% 7.3% -RHGFNIV 43 Q44496_216 99.1% 8.7% -IDGVQNG 44 Q44496_851 100.0% 7.8% -RHGFNVV 45 Q44496_1058 99.1% 6.6% -QTGAVRL 46 S49901_32 92.5% 8.0% -CVGSAKN 47 S49901_271 97.2% 8.8% -PTGNVIY 48 Q9RKE0_52 100.0% 7.6% -LNGAPDD 49 P94409_226 88.8% 7.1% -SIGLRAV 50 O05692_43 92.5% 9.5% -SHGTTAD 51 O05692_206 92.5% 7.6% -SPAIIAA 52 O01335_397 100.0% 11.0% -SVNISIS 53 Q9RJJ9_176 84.1% 8.2% -VEGRENT 54 P94576_72 93.5% 10.4% -NIGIDLI 55 Q9L162_55 91.6% 8.1% -LEGNRIG 56 O28860_48 91.6% 9.0% -SNGIELN 57 O69812_310 84.1% 7.5% -RNGISAA 58 Q9PH27_121 91.6% 7.6% YNIFQKSP 59 Q985L9_163 95.3% 8.6% -ANGISIV 60 Q9F2K6_259 88.8% 6.9% -AGGGEGV 61 Q9HQ54_287 85.0% 9.6% -VRGSRVR 62 O22149_236 99.1% 9.0% -VLGSTKT 63 P07863_85 83.2% 5.4% -VSGYLTA 64 Q9K5A2_162 88.8% 10.3% -NDGILAK 65 Q9K5A2_311 78.5% 8.5% -GHGAIVM 66 P39116_156 79.4% 4.0% -RFGQVHV consensus/100% ........ consensus/90% ...G.... consensus/80% ..tG.... consensus/70% .tsGhh..