cov pid 1 [ . . . . : . . . 80 1 Q27082/406-534 100.0% 100.0% SKSYSKLIQAESYFDSSKVQLEDTSDVGGG----------------------KNVKCDNEGAWMAYKD--IDFPSSGNYR 2 Q27082/544-672 100.0% 86.8% GRRNSKLIQAESYFSYSEVQLEDTLDVGGG----------------------KNVKCDKEGAWMAYKD--IDFPSSGSYR 3 O07653/489-619 98.4% 46.6% SGTVIATIQAEDHSQQSGTQQETTTDTGGG----------------------KNVGYIDAGDWLSYAGTPVNIPSSGSYL 4 O07653/356-483 98.4% 40.8% KANPGDAIQAESWCQMSGVKTETTSDAGDG----------------------LNVGYIDGGDWMTYSV---NIPTTGTYK 5 O69947/695-826 97.7% 19.3% TVIQPPHRQAEHFTAQQGVSPIDKTGANGG----------------------KTVGNIDDGDWISFSP--YKFD--GQKK 6 Q9K473/697-828 96.9% 22.1% HITQPSHRQGEHYGDSSGVQVISHSPAHGG----------------------RTVGNIENGDWISFEP--YALD--NATA 7 Q9Z4P9/386-524 97.7% 24.6% VKNPFDKIEAERYNIGSGFVLEGAFE--GS----------------------LQLGGIQHGSYAAYKN--VDFGSDGAIG 8 Q9KG76/791-923 99.2% 34.3% LKNPYERIQAEAYDAMSGIQTEGTDDDGGG----------------------DNIGWINDGDWVKYER--VHFERDAS-S 9 O88021/330-466 100.0% 32.1% DRDAYGAIEAESYDAQSGTMTEGTSDSGGG----------------------SNLGALANGDWVQYKG--VEFGSSAATQ 10 O52374/1646-17 97.7% 13.9% NFDPYRMVEAETFAWCAGISTKKANAS-----------------------NNMCLTGIDSGDWIALSR--VDFGNAGPQK 11 O30426/1214-13 97.7% 14.6% YFDPYKMVEAETFAWCAGISTKKANAS-----------------------NSMCLTGIDSGDWIALSK--VDFGNVGPQK 12 Q9L816/342-478 100.0% 29.9% DRDAYGQIQAESYDGQSGVATETTTDTGGG----------------------QDMGYLANGDWALYKG--VNFGSTPATQ 13 XYNA_CLOSR/246 96.9% 21.4% RRDAFSIIEAEEYNSTNSSTLQVIGTPNNG----------------------RGIGYIENGNTVTYSN--IDFG-SGATG 14 JQ1935/246-370 94.6% 21.4% RRDAFSIIEAEEYNSTNSSTLQVIGTPNNG----------------------RGIGYIENGNTVTYSN--IDFG-SGATG 15 XYNA_CLOSR/383 97.7% 26.9% TRDAYSIIQAEDYDSSYGPNLQIFSLPGGG----------------------SAIGYIENGYSTTYKN--IDFG-DGATS 16 CAC01659/652-7 96.1% 25.0% VAVQRTTVQAESYAEGSGVDTHAA---GTG----------------------SVLGGFDGGDWVRYDD--VDFG-TGRNL 17 AAG02558/15-14 96.1% 25.0% PLEITDKIQAENYVAMDGVQIEEDSL-GTP-----------------------NIGWINDGDWTQYY---VNIPAAGSYV 18 O87119/247-375 97.7% 22.7% PRSAFSKIEAEEYNSLKSSTIQTIGTSDGG----------------------SGIGYIESGDYLVFNK--INFG-NGANS 19 JQ1935/380-508 96.1% 18.7% VITQETHILS--FRPRIMTAVMVPTFKSLA------------------YQVVAALNYIENGYSTTYKN--IDFG-DGATS 20 XYNZ_CLOTM/294 96.9% 23.5% PKPANTRIEAEDYDGINSSSIEIIGVPPEG---------------------GRGIGYITSGDYLVYKS--IDFG-NGATS 21 XYND_PAEPO/374 99.2% 26.3% NMNPYTRVEAETIAWQAGVTTEPTQASGGP-------------------ISNLNVTNIHNGDWIAVGK--ADFGSAGAKT 22 Q45071/377-512 99.2% 24.1% NLNPYNRVEAETFAWNGRILTEKSTAPGGP-------------------VNNQHVTSIQNGDWIAVGN--ADFGAGGARS 23 Q9KBL8/801-926 96.1% 21.5% ARLLSTKVKALNYDDYHNVLIDRCVEGG------------------------ESIRGLGDGSWIAFHD--INLEQ-PTNL 24 Q59506/864-985 93.0% 19.8% LSVPTRAIDFDGYS-GVELVDETKARG--------------------------DAVAGSTGDWIVFKD--VDLKR-RPSR 25 Q9K7X6/176-301 93.0% 13.3% SQTPI-ASDFQLHACEYSDARGVTSWQCG-------------------------VGSFYPGSWIKFDN--VNLST-GYNA 26 Q9LAP7/24-162 94.6% 19.9% AQAETLELQAESFANSGGTYSDGQPNP----------------VTIYNVNGQGAINFVNAGDYVDYN---INAL-GGEYD 27 O69822/1012-11 96.9% 18.3% GYAVLQAEDPDRME-GPSLVKEAYYSDG-------------------------DLGGVTEGAWEQYTD--LDFGGVAPRS 28 AAG36763/389-5 93.0% 19.5% RWRPENHGDSD-YRKSDASDVDIYKKATG-----------------------NIVGYNTTGDWLEYS---VDIAEAGDYT 29 AAG36766/332-4 93.8% 17.0% DEDSENHGDSD-YRKD--TGVDLYKAGDG-----------------------VALGYTQTGEWLEYT---VDVKADGEYN 30 AAG36765/404-5 91.5% 16.8% GDDSENHGDSD-YRKD--TGADLYKKATG-----------------------VALGYNTTGDWYEYT---INIAEAGDYT 31 O69822/1293-14 95.3% 13.1% LTLTRQADAPVVFD------ATAFEGSSGG-------GLKSEPATWSGAGSATSLGGTYDGAWLDYGD--VDFGDSPKNT 32 AAG02560/413-5 93.0% 12.5% GDDSENHGDSD-YRKD--TGVDLYKKATG-----------------------VIVGYNSEGDWLEWTVN-VK--EAGDYT 33 Q9KYT0/838-960 92.2% 12.8% RPVGARGVQAVDFDEQ--SGTEIVDRTKA----------------------AGDAVAAVSGRTGELLYRDCDFG-AGAAG 34 AAG02559/351-5 93.8% 8.9% AITIPGTLEAENYDLGGSRVSFYDKSSTNEGGAYRKDAVDIVVLDSADLSKGYALGYTQDGEWLEYT---VNVAKTAKFT consensus/100% ............h.........................................h.....G....h.....t........ consensus/90% .....thhps..at........................................ls..ttGthh.ht...hph...s... consensus/80% ..s..thhpu-.at...t..hphht.st.........................slshhpsGsahtap...lshs.sut.t consensus/70% shss.ptlpA-pastttssthchhttsss........................slshhpsGsWhtap...lshs.sGshp cov pid 81 . 1 . . . . : . 160 1 Q27082/406-534 100.0% 100.0% IEYRVASERAGG----KLSLDLNAG-----SIVLGMLDV-P--STGG--WQKWTTI--SHTVNVD-------SGTYNLGI 2 Q27082/544-672 100.0% 86.8% VEYRVASERAGG----KLSLDLNAG-----SIVLGMLDI-P--STGG--LQKWTTI--SHIVNVD-------LGTYNLGI 3 O07653/489-619 98.4% 46.6% IEYRVASQNGGGS----LTFEE-AG----GAPVHGTIAI-P--ATGG--WQTWTTI--QHTVNLS-------AGSHQFGI 4 O07653/356-483 98.4% 40.8% VSYRVAAQAGGG----QLQLEK-AG----GSPVYSNINV-P--ATGG--WQNWQTI--SHNVVLP-------AGEQLIAL 5 O69947/695-826 97.7% 19.3% LTVRASSGGAGG----YIEVRTGSP----TGPLHGSAYI-P--PTGS--WETFQNV--DVPLRAL------PKKTTDVYL 6 Q9K473/697-828 96.9% 22.1% FTARVSSAGSGGT----IEVRAGSP----AGTLLGTATV-P--VTGG--WETFQDV--TTSLGNQ------PGGSTTLYL 7 Q9Z4P9/386-524 97.7% 24.6% FIARASSGTGGG----NIEIRLDSK----DGPKVGTLNVEG---TGD--WNQYIDA--VTLLKDDQGAPSTITGVHDVYL 8 Q9KG76/791-923 99.2% 34.3% IEVRVASDTPGG----RIEIRTGSP----TGTLLGDVQV-P--NTGG--WQQWQTV--TGNVQIQ-------PGTYDVYL 9 O88021/330-466 100.0% 32.1% FKARVASGAAAGVSG-LVEVRLDSR----TSTPVGSFAV-G--NTGG--WQSWRTI--PANIASV-------TGTHDVYL 10 O52374/1646-17 97.7% 13.9% FEAQVSNINGKG----YIELRIDSV----DGRTIAVAEVLP--QSGS--SSQWVKV--EANVENV-------TGVHDLYL 11 O30426/1214-13 97.7% 14.6% FEAMVSNINGKG----YIEIKIDSV----DGKIIGVVEVQP--QDSS--STHWVKV--ETNVDKV-------TGVHDVYF 12 Q9L816/342-478 100.0% 29.9% FYGRVASGAGGGVSG-LVEVRLDSR----TNAPIGSFAV-G--DTGG--WQSWRTV--PANIGSV-------TGTHDVYL 13 XYNA_CLOSR/246 96.9% 21.4% FSATVATEVNTS-----IQIRSDSP----TGTLLGTLYVS---STGS--WNTYQTV--STNISKI-------TGVHDIVL 14 JQ1935/246-370 94.6% 21.4% FSATVATEVNTS-----IQIRSDSP----TGTLLGTLYVS---STGS--WNTYQPY--LQTSAKL-------PAFMILYW 15 XYNA_CLOSR/383 97.7% 26.9% VTARVATQNATT-----IQVRLGSP----SGTLLGTIYV-G--STGS--FDTYRDV--SATISNT-------AGVKDIVL 16 CAC01659/652-7 96.1% 25.0% LVASIGSERPYAGG--RFEVRLDSA----TGPVVGTVRVE---NTGG--WDTYLDQ--TFTITPT-------SGTHDVYL 17 AAG02558/15-14 96.1% 25.0% LTGRVATGSE-----KESVITVTDS----TGKILGTLSVDP-AKSKG--WNDWYES--STKITLP-------AGKQKLTF 18 O87119/247-375 97.7% 22.7% FKARVASGADTPT---NIQLRLGSP----TGTLIGTLTVA---STGG--WNNYEEK--SCSITNT-------TGQHDLYL 19 JQ1935/380-508 96.1% 18.7% VTARVATQNATT-----IQVRLGSP----SGTLLGTIYV-G--STGS--FDTYRDV--SATISNT-------AGVKDIVL 20 XYNZ_CLOTM/294 96.9% 23.5% FKAKVANANTS-----NIELRLNGP----NGTLIGTLSVK---STGD--WNTYEEQ--TCSISKV-------TGINDLYL 21 XYND_PAEPO/374 99.2% 26.3% FKANVATNVGG-----NIEVRLDSE----TGPLVGSLKV-P--STGG--MQTWREV--ETTINNA-------TGVHNIYL 22 Q45071/377-512 99.2% 24.1% FKANVASTLGG-----KIEVRLDSA----DGKLVGTLNV-P--STGG--AQTWREI--ETAVSGA-------TGVHKVFF 23 Q9KBL8/801-926 96.1% 21.5% LTVRAANENKQA----VLEIRADRV----DGPLVSQSVI-P--PTGG--LQAWTTV--TAQVNGE------TSEIRDLYL 24 Q59506/864-985 93.0% 19.8% VTAGVASTSGGS-----IELRLGSP----KGKLIATVPVA---ATGD--VYRYETA--AARVTGP-------SGVKDLYL 25 Q9K7X6/176-301 93.0% 13.3% FAVSYAATQSGS-----FDIRLGSP----NGRLIGTVNYA---PTAG--WENYQWSGTPALDATA-------QGVHDIYI 26 Q9LAP7/24-162 94.6% 19.9% IEYFVGTGVTSGP---NIEVLVDVN---GTWQSQGSVAV-PY-GS----WDDFQSLTPSHTVTLP-------VGTSTVRL 27 O69822/1012-11 96.9% 18.3% VSVRYANSQAAAAEPSSVDIHAGDA----DGPVVATVSL-P--GTGG--WQYYTTV--RAAVSDP----QALLKASSATF 28 AAG36763/389-5 93.0% 19.5% ATASVAADGSGS-----FKLSIDG-------KSVGEFDVT-W--TGSS-WDNFIDV--KKKVTLP--------AGKHTLR 29 AAG36766/332-4 93.8% 17.0% IDASVAAGNSTSA----FKLYIDE-------KAITDDVSVPQ-TADNS-WDTYKTI--SVKEKVT------LKAGKHVLK 30 AAG36765/404-5 91.5% 16.8% AIASVATEGTGA-----FTLSLDG-------KSLAEFEV-----TGTS-YDDFSDV--KKKVTLP--------AGKHVLR 31 O69822/1293-14 95.3% 13.1% VTLTYVNNSARCGTGSAVQLYLDSFDPDAPGTPYATVPL-P--VTGSS-WSSGGTT--SLTLPEA-------ITGTHAVH 32 AAG02560/413-5 93.0% 12.5% MFAAVAAAGSTS----SFQLSLDG-------KALTEKITVPAAKEGEENYDDYNKV--KANVTLP--------AGKHVLR 33 Q9KYT0/838-960 92.2% 12.8% VTVSVAGAGS-------VEVALDGG----PAVAVLSPDA-P--TAGP--YDYV-EL---ASAFTA-------EGVHDL-R 34 AAG02559/351-5 93.8% 8.9% VEVQMATASEKA----GVQLFIDNK------AVSDGIIAK--QGEDST-YTAVQSQLGEIAAGEH-----------VL-K consensus/100% h.h.hss............h........................t.......h........................h.h consensus/90% h.hthust.st......hpl.hss.........hs.h.h.....sss..hpta.p....h.ht..........t..phhh consensus/80% hpspsustssts.....hplphsu......s.hlush.l.....oGs..hppa.ph..tttls..........uhpplhh consensus/70% hpspVAstsssu.....lplclsus....suhhlush.l.s..sTGu..apsapsl..ptsls.s.......tGspclhh cov pid 161 . . ] 183 1 Q27082/406-534 100.0% 100.0% YVQRAS-------WNINWIKITK 2 Q27082/544-672 100.0% 86.8% YVQKAS-------WNINWIRITK 3 O07653/489-619 98.4% 46.6% KANAGG-------WNLNWIRINK 4 O07653/356-483 98.4% 40.8% SAITGG-------FNINWLKVES 5 O69947/695-826 97.7% 19.3% VFKGG-EGA---LYDIDDFEFSK 6 Q9K473/697-828 96.9% 22.1% VFKGG-SGA---LFDVDEFSFTT 7 Q9Z4P9/386-524 97.7% 24.6% VFTKTNDDY---LFNLNWVKFTT 8 Q9KG76/791-923 99.2% 34.3% VFKGSPEYD---LMNVNWFVFRA 9 O88021/330-466 100.0% 32.1% TFTSGQSAD---FVNVNWFGFGH 10 O52374/1646-17 97.7% 13.9% VFRGEKKSN---LFDMDCWRFVR 11 O30426/1214-13 97.7% 14.6% VFKGENEKN---LFDMDCWKFVK 12 Q9L816/342-478 100.0% 29.9% TFSSGQPAD---FVNVNWFDFGH 13 XYNA_CLOSR/246 96.9% 21.4% VFSGP--------VNVDNFIFSR 14 JQ1935/246-370 94.6% 21.4% YSQ---------VQSMWTTSYL- 15 XYNA_CLOSR/383 97.7% 26.9% VFSGP--------VNVDWFVFSK 16 CAC01659/652-7 96.1% 25.0% KALGTAPG----VANIDHFSVEK 17 AAG02558/15-14 96.1% 25.0% TYTGEDTY----LCNVDWYNLKA 18 O87119/247-375 97.7% 22.7% VFSGP--------VNIDYFIFDS 19 JQ1935/380-508 96.1% 18.7% VFSGP--------VNVDWFVFSK 20 XYNZ_CLOTM/294 96.9% 23.5% VFKGP--------VNIDWFTFGV 21 XYND_PAEPO/374 99.2% 26.3% VFTGSGSGN---LLNLDAWQFTP 22 Q45071/377-512 99.2% 24.1% VFTGTGTGN---LFNFDYWQFTQ 23 Q9KBL8/801-926 96.1% 21.5% VFKGE--------FQLSWFSFS- 24 Q59506/864-985 93.0% 19.8% VFQGD--------VRIKDLSLTS 25 Q9K7X6/176-301 93.0% 13.3% VSRA-------GAANLREFWFKN 26 Q9LAP7/24-162 94.6% 19.9% LAVGSTW-----QWNLESFRLTQ 27 O69822/1012-11 96.9% 18.3% VFHAPSGRQW--VSNFDWYQFSP 28 AAG36763/389-5 93.0% 19.5% MDVTAQ------YFDIDYINFTK 29 AAG36766/332-4 93.8% 17.0% LEITAN------YVNIDWIQFSE 30 AAG36765/404-5 91.5% 16.8% LDVTQQ------YFDIDYINFVK 31 O69822/1293-14 95.3% 13.1% LRLTTNADSSH-VANLGQVAFDR 32 AAG02560/413-5 93.0% 12.5% MDVTGA------WFDVDYFTFVK 33 Q9KYT0/838-960 92.2% 12.8% VTLRGA-------LRLAHVGFSG 34 AAG02559/351-5 93.8% 8.9% MQIVGN------YVNIDNIRFCE consensus/100% ..............ph..h.h.. consensus/90% h..t.........hshp.h.h.. consensus/80% h..s.........hsls.hthst consensus/70% hhpss........hslshhpFsp