cov pid 1 [ . . . . : . . . 80 1 351607.Acel_0615_from_571_to_6 100.0% 100.0% VQYKNNDSAPSDNQIKPGLQLVNTGSS-SVDLSTVTVRYWFTRDGGSS------TLVYNCDWAAMG---------CGNIR 2 269800.Tfu_2712_from_479_to_55 96.4% 53.6% VYYRNNSLAADDSQIAPGLRLVNTGSS-TVDLADVEIHYYFTNEPGG-------TLQFTCDWAQVG---------CANVN 3 227882.SAV557_from_596_to_679 100.0% 53.6% VLYKNNDSSATDNAIRPGLRIVNTGSG-SLDLSKVTARYYFTRDSGSP------TVNAWCDYAAVG---------CSNVS 4 351627.Csac_1076_from_718_to_8 98.8% 40.5% VLYANKETNSTTNTIRPWLKVVNSGSS-SIDLSRVTIRYWYTVDGER-------AQSAISDWAQIG---------ASNVT 5 326423.RBAM_018100_from_356_to 97.6% 41.7% VQYKAGDGRVNSNQIRPQLHIKNNGNA-TVDLKDVTARYWYNVK-NK-------GQNFDCDYAQMG---------CGNLT 6 279010.BL01471_from_391_to_472 97.6% 35.7% VQYRAGDNNVNGNQIRPQLNIKNNSKK-TVSLNRITVRYWYKTN-RK-------GQNFDCDYAQIG---------CSKIT 7 203119.Cthe_2360_from_706_to_7 98.8% 36.9% VLYKYGDTTAATKDIRGSIKIKNTGTK-PVNLSDVKVRYWFTKDGAS-------SQEFVCDYAHLS---------ESMIT 8 203119.Cthe_2760_from_744_to_8 98.8% 35.7% VSYKCGVKDGTKNTIRATINIKNTGTT-PVNLSDIKVRYWFTSDGNE-------QNNFVCDYAAFG---------TDKVK 9 100226.SCO0535_from_41_to_124 100.0% 36.9% VQYRTSASGATADQTEPWFKVRNTGSS-IVQLSQVKIRYYFKADSPNA------SYRFACSWAVRG---------CAAVT 10 203119.Cthe_3077_from_371_to_4 98.8% 34.4% VEFYNSNPSDTTNSINPQFKVTNTGSS-AIDLSKLTLRYYYTVDGQK-------DQTFWCDHAAIIGSNGSYNGITSNVK 11 272562.CAC0910_from_39_to_129 98.8% 30.4% IQFADTNTSTTMNTIAPKFKITNNTGA-PLDLTTLKLRYYFTADGTQ-------DENFWCDHAGMLNGYN-YQTITSNVV 12 203119.Cthe_0071_from_793_to_8 98.8% 33.3% LQYANGNGSDTTNTINPRFKLINNSGS-PVKLSDVKIRYYYTIDGEK-------GQQFWCDWSSAG---------NSNVT 13 203119.Cthe_0040_from_742_to_8 98.8% 31.0% LQYANGNAGATSNSINPRFKIINNGTK-AINLSDVKIRYYYTKEGGA-------SQNFWCDWSSAG---------NSNVT 14 203119.Cthe_0271_from_163_to_2 98.8% 31.0% VQYKNGDSTSSVTAIYPIFKITNNGDT-SVKLSDIIIRYYYTKEGNE-------NETFWCNEFTRD---------GSQVY 15 203119.Cthe_0404_from_377_to_4 98.8% 36.9% VRFYNNNTLSETGVIYMRINVINTGNA-PLDLSDLKLRYYYTIDSES-------EQRFNCDWSSIG---------AHNVT 16 203119.Cthe_0267_from_514_to_5 98.8% 27.4% LQAYNHIRTSETKELQPRIKLINTGNT-PITLSEVKIRYYYTKDQVI-------NEIYTCDWSNIT---------SSKIT 17 203119.Cthe_1257_from_41_to_12 95.2% 23.6% LEFYNGDFGASVSSISMNFRITNNGSS-QISLSDIKLRYYFTDDGVSP-------ITVFIDYANN-----NGRGINNDVT 18 203119.Cthe_2506_from_54_to_15 100.0% 24.5% LEFFNNVKDDNVTLISPYFRVINNSSSDEIYLQHVKIRYYFTLDSSDSE----ETMNYEIYYAGKSNI--DGTGAVEDIK 19 203119.Cthe_0413_from_1007_to_ 92.9% 33.3% VQYLCENTQTSTQEIKGKFNIVNTGNR-DYSLKDIVLRYYFTKEHNS-------QLQFICYYTPIG---------SGNLI 20 218491.ECA1981_from_359_to_441 98.8% 36.9% LQYRNVDNNPSDDAIRMAFNIKNTGST-PIKLSDLQVRYYFHDDGKP-------GANLFVDWANVG---------PNNIV 21 351627.Csac_1076_from_491_to_5 92.9% 8.7% FFVEAGINASGTNFIEIKAIVNNQSGWPARATNKLKFRYFVDLSELIKAGYSPNQLTLSTNYNQG-----------AKVS 22 203119.Cthe_0040_from_534_to_6 90.5% 8.7% IFVEAGVNASGNNFIEIKAIVNNKSGWPARVCENLSFRYFINIEEIVNAGKSASDLQVSSSYNQG-----------AKLS 23 203119.Cthe_0543_from_485_to_5 92.9% 4.3% FYVEAAVNAAGPGFVNIKASIINKSGWPARGSDKLSAKYFVDISEAVAKGITLDQITVQSTTNGG-----------AKVS 24 272562.CAC0913_from_494_to_579 92.9% 6.5% FYVEAAVNATGKNFEEIKSKIYNKTGWPARVTDKLSFKYFIDISEFVKQGYKASDIKVTTNYNEG-----------GTAS 25 203119.Cthe_0745_from_487_to_5 92.9% 9.8% FMVEAYVSSSDKNYVEIKTRLNNRTAWPARVSEGLSFRYFIDLTEVIEAGYGPNDLIISGGQGSS-----------GKVS 26 351627.Csac_1079_from_487_to_5 91.7% 8.7% VE-SKFGNSQGANYTEIISYIYNRTGWPPRVTDNLNFKYFIDLSELIKAGYGPDIVKVETYYSEG-----------GKIS 27 203119.Cthe_0578_from_487_to_5 91.7% 10.8% IYVEATANSN--NGVELKTYLYNKSGWPARVCDKLSFRYFMDLTEYVSAGYNPNDITVSIIYSAAPT---------AKIS 28 279010.BL01232_from_501_to_586 92.9% 7.6% YFAEASINSSGNSYTEIRAQLNNRSGWPAKKTDQLSFRYYVDLTEAVEAGYSAEDIKVTAGYNEG-----------ASVS 29 203119.Cthe_0625_from_473_to_5 94.0% 10.9% FFVEAAINQASDHFTEIKALLNNRSSWPARLIKDLSYNYYMDLTEVFEAGYSVDDIKVTIGYCES-----------GMDV 30 315750.BPUM_1558_from_463_to_5 92.9% 6.5% FFVEAAVMNNDATSTQVKAVLYNRSGWPARRSQTLSFRYYVNLSEVFAKGLTEKDIQVTAAYNEG-----------ASLS 31 349521.HCH_02464_from_488_to_5 94.0% 7.6% FYVEAKLNSSGPRYVEIAAQVHNHSAWPARGSEQLRFRYWVDLSDEFAAGYGLQDVKVTTAYSQA-----------TEVS 32 269800.Tfu_2176_from_509_to_58 90.5% 13.6% IFVEAQINTPGTTFTEIKAMIRNQSGWPARMLDKGTFRYWFTLDEGVDP----ADITVSSAYNQC--------------A 33 351607.Acel_1701_from_515_to_5 90.5% 13.6% IYMQASVNSAGTNYTEIKAYIVNQSAWPARALDHGSFRYYFTLDGSTTP----AQISLSSAYNQC--------------S 34 272562.CAC0916_from_483_to_569 94.0% 12.0% YYVDANIMKESNEECTIQAFIHNASLLPPHYEKGMSFRYYVDLSELYKKGYTVNDVGVRANYAAGG----------GTLS 35 203119.Cthe_2761_from_477_to_5 94.0% 13.0% YYADAKIYEENESGITVDLNMYNIVTSPPQYESDLSCRYFVDLSEYAGENIDMSKFVTKVYYSPAG----------ATIS 36 203119.Cthe_0043_from_499_to_5 90.5% 7.6% YFCRGWIIYEGYGTLNLLLQVNNRSGWPPTMKDKLSVRYFMDLTEVFESGGTVDDVQISLGQNEG-----------AKLI 37 203119.Cthe_2423_from_53_to_14 97.6% 20.0% VTLKNIKTGVPSDTIALKIGIINLNKAININLNDIKLRYYFTNDGCSPIQVN--IKLFGTETESFN----------PELV 38 203119.Cthe_0059_from_343_to_4 97.6% 23.5% IQYYSR-KPHDSAGIDFSFRMFNTGNE-AIDLKDVKVRYYFKEDVSID------EMNWAVYFYSLG---------SEKDV 39 203119.Cthe_2147_from_46_to_12 89.3% 18.8% IHYMDGTLDVKYQSMRPYIIIHNNSGM-DVDMADLRVRYYYEKEGVT-------EEVLTCFYTAIG----------ADKI consensus/100% h...........t.......h.N.s.......tth.hpYahp.p.............h...................... consensus/90% h.h.s...t.t.t.ht..h.l.Npss..sh..pplph+Yahp.p..........t..h...hsth...........t... consensus/80% h.h.st..sss.s.hp.th.lhNpus..sh.hpplphRYahshst.........t.ph.stasth...........spl. consensus/70% l.htss.ssssss.lp.thplhNpush.shthsclphRYahshst.........p.ph.ssasth...........upls cov pid 81 . 1 ] 104 1 351607.Acel_0615_from_571_to_6 100.0% 100.0% -ASFG---SVNPATPTADTYLQLS 2 269800.Tfu_2712_from_479_to_55 96.4% 53.6% -ASFT---SLS--APGADTSLVLT 3 227882.SAV557_from_596_to_679 100.0% 53.6% -LKVV---PLTTPVPGADAYLEVG 4 351627.Csac_1076_from_718_to_8 98.8% 40.5% -FKFV---KLSSSVSGADYYLEIG 5 326423.RBAM_018100_from_356_to 97.6% 41.7% -HKFV---TLHKPKQGADTYLELG 6 279010.BL01471_from_391_to_472 97.6% 35.7% -HKFV---QLKKAVNGADTYLEVG 7 203119.Cthe_2360_from_706_to_7 98.8% 36.9% -AKFV---DLENPVENADNYLEIG 8 203119.Cthe_2760_from_744_to_8 98.8% 35.7% -GIVK---KIENSVPGADTYCEIS 9 100226.SCO0535_from_41_to_124 100.0% 36.9% -GTFG---TLANPTAAADRYLEIG 10 203119.Cthe_3077_from_371_to_4 98.8% 34.4% -GTFV---KMSSSTNNADTYLEIS 11 272562.CAC0910_from_39_to_129 98.8% 30.4% -GTFV---AMDNATATADHYLEIS 12 203119.Cthe_0071_from_793_to_8 98.8% 33.3% -GKFV---KLSSPKNNADYYLEIG 13 203119.Cthe_0040_from_742_to_8 98.8% 31.0% -GNFF---NLSSPKEGADTCLEVG 14 203119.Cthe_0271_from_163_to_2 98.8% 31.0% -GTFV---KMSKPKENADHYLEIG 15 203119.Cthe_0404_from_377_to_4 98.8% 36.9% -GSFG---KVNPSRNGADTYVEIG 16 203119.Cthe_0267_from_514_to_5 98.8% 27.4% -GTVV---QMSNPKPNADSYVEIG 17 203119.Cthe_1257_from_41_to_12 95.2% 23.6% -YTIK-----DINSSGANKYIEFG 18 203119.Cthe_2506_from_54_to_15 100.0% 24.5% PNTIVKIAKMDIPTDMADHYLEIG 19 203119.Cthe_0413_from_1007_to_ 92.9% 33.3% -PSFG--------GSGDEHYLQLE 20 218491.ECA1981_from_359_to_441 98.8% 36.9% -TSTG---MPAASTDKANRYVLVT 21 351627.Csac_1076_from_491_to_5 92.9% 8.7% GPYVW------DSSR-NIYYILVD 22 203119.Cthe_0040_from_534_to_6 90.5% 8.7% D--VK------HYKD-NIYYVEVD 23 203119.Cthe_0543_from_485_to_5 92.9% 4.3% QLLPW------DPDN-HIYYVNID 24 272562.CAC0913_from_494_to_579 92.9% 6.5% QLIPW------DEKN-NIYYVNVD 25 203119.Cthe_0745_from_487_to_5 92.9% 9.8% GPHLW------NKEK-NIYYIEVD 26 351627.Csac_1079_from_487_to_5 91.7% 8.7% GPYVW------NASK-NIYYILVD 27 203119.Cthe_0578_from_487_to_5 91.7% 10.8% KPILY------DASK-NIYYCEID 28 279010.BL01232_from_501_to_586 92.9% 7.6% ELKP-------HDASKHIYYTEVS 29 203119.Cthe_0625_from_473_to_5 94.0% 10.9% EISPI------THLYDNIYYIKIS 30 315750.BPUM_1558_from_463_to_5 92.9% 6.5% PLKV-------YDASAHVYYAEID 31 349521.HCH_02464_from_488_to_5 94.0% 7.6% GLQPW------GDPDDHIYYVDAS 32 269800.Tfu_2176_from_509_to_58 90.5% 13.6% TPEDV------HHVSGDLYYVEID 33 351607.Acel_1701_from_515_to_5 90.5% 13.6% APQGP------TQYSGNIYYVTIS 34 272562.CAC0916_from_483_to_569 94.0% 12.0% GFIPY------DEAK-HIYYVEAS 35 203119.Cthe_2761_from_477_to_5 94.0% 13.0% ELKPY------DKEK-NIYYVEIS 36 203119.Cthe_0043_from_499_to_5 90.5% 7.6% GLKHY---------RDNIYYFTVD 37 203119.Cthe_2423_from_53_to_14 97.6% 20.0% KTSVV----TGLSYPGADSYVEIG 38 203119.Cthe_0059_from_343_to_4 97.6% 23.5% QCRFY----ELPGKKEANKYLEIT 39 203119.Cthe_2147_from_46_to_12 89.3% 18.8% FAEFH----------PELGYAEIG consensus/100% ................t...h.ht consensus/90% ....h...........t.hYh.ls consensus/80% ....h...........s.hYlpls consensus/70% .hphh......t.hpts.hYl-ls