cov pid 1 [ . . . . : . . . 80 1 Q9VPK3/3-427 100.0% 100.0% LVQENVTTRGYRPGNRHRPYNLAETVL--------------ILHYLAQYHALPIALRLK----------KPQVYEEYVRP 2 Q9VBS7/18-423 97.5% 18.6% MVFEDLSRQNFKNFDRLKGFDLPHMRE--------------VLRKLAELHAASVVAKEI----------NGPYDAMYNMS 3 Q9VBT1/15-419 96.4% 24.6% LVQEDLQTKKYRNINRLKGFDMAHMHR--------------VLEKLAEFHAAGAVWRQR----------KGPFPDDFQR- 4 Q9VBT0/15-422 97.5% 22.1% FIFEDLCVKRFKNMDRTKGLDMEHMTK--------------CLQKLAEYHAASAVYEEL----------HGPYPSEFSEG 5 Q9VBT0/435-761 69.5% 14.9% FIFEDLSTRNFVAADRTKGVNMEHMRL--------------SLRKLAELHAASVIYKER----------YGPYHADFDNG 6 Q9VGJ8/45-455 98.5% 21.6% VLMHDLGQNGFKNINRLECLNLEQTKF--------------ALTRLAQFHAAGATMVQV----------HGPYPDIFVNG 7 10726466/60-47 98.5% 21.1% VLMSDLSQDGFKNLNRLECLNLEQTKF--------------ALKKLAQFHAASSMNVQV----------NGPYEDQFVNG 8 Q9VBS6/16-415 95.9% 19.1% ILLEDLHRKNFKNANRLAGLDLDHMHK--------------VLEKLAAFHAASACYVEH----------HGLFGEEFTVG 9 Q9VBS6/418-786 95.9% 20.1% VLLEDLKAKSYKNVERQAGFNKLCLKQ--------------VLKKLAQFHAASAVCVEK----------HGAFSNLLVNG 10 Q9VGJ8/481-883 97.0% 20.1% LLLENLQPSGFKMVDRMIGMDLEHSKC--------------TLKKLAQWHAASLKYKEL----------NGPYSPKYNNG 11 10726466/494-8 94.9% 22.7% LLMENLQTKGFKMADRMKGLNMEHTKS--------------SLKKLAQWHAASIKYKEL----------NGAYPPLYNDG 12 Q9VBS1/5-383 97.0% 25.1% ISLEDLCIKGFKNANRLEGLDQAHTER--------------VLRKLAQWHAATAVRVAT----------KGQYPEIVLNG 13 Q9VBS2/3-337 97.0% 21.6% VALEDLGLKGFKNANRLEGLDQEHTER--------------VLRKLSQWHAASAVRVAT----------KGPYPKILLQG 14 Q9VBS3/16-399 88.8% 20.7% VLLEDLRPRGFKNVDRLQGLDQAHTES--------------VLRKFAQWHAASAVRVDL----------KGPYEEKYTNG 15 Q9VBS4/16-414 95.9% 21.1% VLLEDLRPRGFGNIDRLEGMDQAHTEC--------------VLKKFAQWHAASAVRVET----------KGPYQEKYTKG 16 Q9VBS5/9-403 97.5% 20.6% VLLQDLGPLGFRNVDRLEGLDMVHTKC--------------VLKKMAQWHAVSATRIHL----------KGPYPQNYLQP 17 Q9VGJ6/46-446 95.4% 23.1% IVLEDLGKRGFRNVDRQNGLDIQHTEA--------------TLEKLAQFHAASAVRFEL----------KGSYPEEYNQN 18 Q9VBT6/3-408 97.0% 23.1% IIFEDLSVVGYVMADRVRRLNEEHTHL--------------ILRKLAKFHAATAVLNE----------RQSGCLESYDRG 19 Q9VBT5/32-436 97.0% 24.1% LIFEDLNARGFVMPDRLVGLDQKLARI--------------VLRKLAKMHATSAVLNE----------RENHILESYDRG 20 Q9VBM2/136-534 96.4% 23.4% LIMEDLSYKGFVMAPRLQRLDEQHVSL--------------VLRKLAKMQAASAVLENNLL-------ENNFSLTEYDKG 21 Q9VBT7/31-436 97.0% 24.1% IIFEDLAVTKYVLADRLVGFDLEHTRL--------------GLRKLAKMHAAAAVLNE----------RQPGLLTKFDHG 22 Q9VBT9/3-357 97.5% 20.6% IIFEDMSLENYRVADRLKKLDLEHTHL--------------VLEKLANFHAAGAALAER---------QPGIFAKNFDRG 23 Q9VBT8/11-418 97.5% 21.6% IIFEDMSLDHYKVACRRKKLDLEHTHL--------------VLEKLALFHAASSVLAER---------QPGIFDKNYDRG 24 Q9VBU0/8-396 97.5% 22.6% IMFEDLSLERYKVACRVKKLDLEHTYL--------------VLEKLADFHAAGAALAQR---------QPGIFEKNYDRG 25 Q9VL46/1-384 86.3% 20.1% MILEDLAPYKFVNADRVKQLDMAHTEL--------------TLEMLAKFHAASIVLQER---------HPNLLTKCFYTH 26 Q9V8Z4/1-405 97.0% 18.6% IILEDLAQYNYVNADRVKQLDLAHTKL--------------TLEVLAKFHAASIVVKQR---------HPELLTKSLFIH 27 O77436/13-421 97.5% 24.1% IVFDDLTQYGYKLASRQSGLNEEHCVV--------------ILKKLGKFHASSMVLAEKEP-----SVREHFTTGMLDEN 28 Q9VMF0/11-422 98.0% 23.5% IVFSDLTVEGFKVASREKGLDWNHASL--------------ILQQLGKFHATSMVLAKKDP-----AIVKQYTRGMLSED 29 Q9VMF1/1-353 97.0% 20.7% LVFEDLAEKGFVMASRELGLNEEHCQL--------------VMERLAEFHATSMALAVVDP-----HIFDAYGDGMLSPR 30 Q9VWY5/7-417 95.9% 22.5% IILEDLCAAGYQLKCRQLGLDFDHAAL--------------VMAKLAEYHALTMVMAEREPE----TIVDRYPFGLLHMD 31 Q9VBT2/16-414 95.4% 16.5% LIFEDLVPQGYFVIR-DRPINMNEYKN--------------VFSKLAKWHAVSMKVLNE----------QPDILKDFKYG 32 Q9VBT4/16-400 98.5% 18.5% MIFEDLVPQGYYVIR-DRPVAQEELKT--------------AFAKLAKWHAISMKYIKE----------QPDFLKEFKYG 33 Q9VBT4/401-777 98.5% 17.0% MIFEDLVPQGYTVIR-DSPPSLGDLKL--------------AFDKLAKWHAVSMKVINE----------QPYFLKEFQYG 34 Q9VBS8/271-651 98.0% 18.0% LIFEDLAEMGYIVLR-DRDATLDEIRR--------------IYFKLAKWHAVSLKVQNE----------QPEFLESYTHG 35 Q9VBS9/12-415 98.5% 15.1% LIFDDLVEMGYAVVR-DRFLTREEISS--------------AYSKLAKIHAISMKFIHE----------QPEYLKEFKNG 36 Q9VBS8/1-268 96.4% 16.1% MIFEDLGEMDYAMVR-DRVLTHGEICG--------------AYSKLAKFHALSMKIINE----------RPEFVKEFKDG 37 O17621/8-383 89.8% 13.9% VIVMEMFEDCKVYDIITGFNEEQLYK---------------IVDEIVKLHIF--SLTTEEW--------KTIVPDAFVLE 38 O17620/8-390 89.8% 11.4% VIVMEMFEDCTVHDLIDGFDKDQLFK---------------IVDEIVNLHIF--SLTTEEW--------RSVLPDSAMRD 39 O45986/8-330 76.1% 10.6% VIVLEMLEDCKLHDLIPGFNEDQK------------------------------------------------------LA 40 Q20974/56-410 95.9% 13.9% YLISEYYPNIHHIGMHESIPAEDLIP---------------VIHAIAAFSAIGMKLSEEE---------TKYARGAD--F 41 Q9U3D0/65-408 96.4% 11.4% YIISEYIPNLHHVGMNDCISIEEIWA---------------VVDGIAAFSAMGESMSEDEK--------KKSTIGEI--Y 42 Q19034/56-404 94.4% 14.9% FMIMEFIPNVHSIPMYEAIPADDLIS---------------LVRGIATFAALGETS-EGD---------KTSAGGPE--F 43 Q9N4Y2/69-421 94.4% 11.4% FMILDFVPNVHPMPMYESIPADDLIS---------------LVRGVATFAGHGESL-TAEQ--------RSFARGSD--I 44 Q19030/63-393 94.9% 9.4% YLITDFIPNVHVIEAYKSIPADNIAA---------------TIRGIATFSALAEHL-EREE--------QKSFMSTD--F 45 P91071/74-423 94.4% 12.9% YIILEYIPNIHTTSMSENIPADDLIS---------------TIRAVATFGALGACL-PADQ--------KTFALGAN--F 46 Q9U368/63-422 94.4% 15.4% ILGMEFVSDVTIRHLYCNAKPYELHP---------------VLRSLATLQAGSLHLTEDEI--------NSISGFD---- 47 O44594/72-422 94.4% 13.9% ILGMEFDGNVTVRHIYCNVKPRELYP---------------VLRSIATLQAGSLHLTKDEI--------ESISGLD---- 48 Q9XUP8/66-411 93.9% 14.9% VLGMEYVDDAVVRHLYCNAKPHELHP---------------ILQSLATLQAGSLHLTEDEI--------NSISGYD---- 49 Q9XUP2/61-432 94.4% 14.4% FLGMEYVDDVTIRHLYCNLKPYELHPVSFQLSKLYLLFYSKVLKAVAQLQAESLHLSDEEL--------QSISGFD---- 50 Q9XUP7/60-422 93.9% 13.9% ILGMEAVDDVTVRHLYYNVKPFELHS---------------VLKSIARLQAESLHLTDQEK--------QSIAGFD---- 51 Q9XUP6/53-325 70.1% 8.5% FFAMEYVDNAITRHLYINLKSYELHS---------------ILKSLAVFQAESLKLNKREQ--------ESVTGYD---- 52 O61882/71-413 95.9% 15.9% FIGMEYVEGSIVRHSYDTCTIEEIQP---------------ILRAIAKLQALSLQNPAEIS--------KDLQKIDNGAI 53 Q9VGJ5/161-501 75.1% 14.4% IYGDYILNKGYSVANGLKGLSVTAMEG--------------VLSKLAAYHAGTAAYIAK--------------------- 54 Q9VBT1/434-841 98.0% 20.6% LILEDMQLSGFENFERGRLLNLDYVLP--------------TIEKVAKLHACSALIAQD----------SPEVLEFFDEA 55 Q19647/11-376 97.0% 16.1% HIIMEYMSGITHLYCYNNLKPDELIEP---------------VKNLARFHSIGAELDEE------------EGSNVPRDF 56 Q9VEB7/60-472 98.5% 21.6% LIMEDLRERGFQMSDRHKGLSLEETQS--------------VLLQVAQLHGLSLAYKFEKP------LEFSNLCSMISEG 57 Q9W3C3/9-425 98.0% 19.4% IALEDVGPRGYRAPVRQDYISLEDALL--------------TMRTLGRFHGVALAFNALD----------SKNFEKAAGS 58 Q9VSS3/31-453 96.4% 17.6% IVLQDLKAMGFRMKDRLAGLELSDCLL--------------VMKKLAQLHAASLAAQELES------SSFAFHADHLQEI 59 Q9VYW8/222-628 98.0% 19.3% IVLEDLSCAGFSLHNRFLDLSVEHVRR--------------VMLTYAKLHAISLAGKRQLP-------EKMQQLQQLVDI 60 Q9VW98/4-408 99.0% 21.6% LIFEDLSESGFRPNSRCIMPTYDIVVC--------------SLKALAELHACSFILQQTDP------LQFKQLVEFVEKD 61 Q9VPY7/6-453 98.5% 15.3% LALKHLKGDGYQLGPRLTLRRDQLEAMVG------------LVGPFHALGYATKILQPNVHARLRAGVVDMPFVSSSGKG 62 Q20584/117-437 91.9% 12.5% CIAIELVEDIKTLSPLENFSDDQMLQV---------------LDALAKLQVQFINLSEDK---------RREAPHQGLSG 63 Q9TXV0/15-384 94.4% 15.6% IVAENLSEKVFAVEHIPGLKHEQILRL---------------MEALAGLHSFLMKRDDK------------SYVESFVEG 64 YLK1_CAEE/69-4 88.8% 15.8% LACEDYSGKVYSIDFVPGFDESQVLQL---------------LEALAHFHAKIIEISDEIP------------------- 65 Q9VIG3/15-404 98.5% 22.0% LIFENLADQGYRMGAGRDGLLTYEQLH-------------CCLKTLAAMHAGSIIQEQRTG---------QKIAQSQPKS 66 Q9VIG4/623-987 97.0% 16.3% FVMQNVEDMGYVALPPGTRFLNENQMG-------------PILKSLATLHASSIAYEKQQG---------KTIGVEFRKW 67 YOK5_CAEE/95-4 91.4% 15.7% IVMQDLEGMVSVPYYESLNLQQIASIG----------------SQMLNLHLFSIGMSDEWR------------------- 68 Q9XWR4/110-467 89.8% 13.4% VVMEDVSEKGQEQDPVKGLMLEVVRDL---------------LKQIAYLHSISLKHTSWST------------------- 69 Q18739/113-454 93.9% 13.1% VYVTQFLKKGSVRTKLGLPELEQVAS------------------QIAKLHAVNSKTINK----------QFSLNVQENYG consensus/100% h....h.......................................................................... consensus/90% hhh.ph....h...........t...................htthuthpu.s..h.t...................... consensus/80% hlh.-h..tshh...h.th.t.t.h................hhptlAphpAhuhhh.p...................... consensus/70% llhp-h..psahhh.h.phhs.phht...............hlcplAphHAhuhhh.pp..........pt.h.tt.... cov pid 81 . 1 . . . . : . 160 1 Q9VPK3/3-427 100.0% 100.0% YFKKFDMNSNIDQAETEIMNKEILKDIKLVTS---DERDVNRVKELLDIFQAFQASN-DVDDG---PFTTLVHGDLWINN 2 Q9VBS7/18-423 97.5% 18.6% IYNEQSRDLFESLG--KQREEQFLKAMRNWDL--ENAESYIARMWDPLEVFEEAVQVNQVDED---EFNVLNHGDCWSNN 3 Q9VBT1/15-419 96.4% 24.6% IYLPANYQKSKSY---QARLQSYKTAIASWGL--ADHEQYVSRIPTADQFVQSYASCFNNNPQ---EFKVLNHGDFWSSN 4 Q9VBT0/15-422 97.5% 22.1% FVKKDVKKFHVDGF--QLKEKAYKKAMLSWGL--KDADKYIKAFPTVKQYWAQCLSTLELNPD---EFHVLNHGDFWSSN 5 Q9VBT0/435-761 69.5% 14.9% FARKDKIEHSVRRF--EVKAPEYKAAMKTWGI--DEC--YLKNFPTTEQYGKLCLESLNVDPQ---DFNVLTHGDFSPSN 6 Q9VGJ8/45-455 98.5% 21.6% VMGNNKEAIIAFMEGMLASFRTSFMANLDKFK--NGEEYREKLEKALAGLTMEFMKLGIVDPN---EFNALNHGDCWMNN 7 10726466/60-47 98.5% 21.1% VMGGNKEVLMAFYEGMVASFRTALMANLKNFK--NGEEFREKLEKAFVQIFLDFEHLMTADPD---EFNVLNHGDCWMNN 8 Q9VBS6/16-415 95.9% 19.1% VFSESNRQLLQEFN-----ASGAFLAQLKKWK--NAQKIYEKLADSDDYLVDRLLQDQQYNTR---EFNVLNHGDCWANN 9 Q9VBS6/418-786 95.9% 20.1% VYTKANESVLQELN-----DPEIFLSQLRRWR--LGDHFHKRLVEKEKDLVDGLLKLHSPDSN---EFNVLNHSDCWVNN 10 Q9VGJ8/481-883 97.0% 20.1% IFTEQTAPIFKGMF---VNTKKSFIEEVSKFD--GVDEYLHKMPEILDTYVDRILEDAKINEQ---AFNVLNHGDAWINN 11 10726466/494-8 94.9% 22.7% IYIEQTRDVFHNMF---ASAKEAYIRIFGTF-------YLFLKEWIIDNHVDQVLEDAKINEQ---AFNVLNHGDAWINN 12 Q9VBS1/5-383 97.0% 25.1% FFKEENRPMMNDMM---NGMGQVFVKCCSTYE--GNEAYIEKVKALKDVMIDELFKMCVVDPT---EFNVLNHGDSWSNN 13 Q9VBS2/3-337 97.0% 21.6% FFKEESRPVMSEMI---KGMGANFVKSCATYE--GHEAYLDKVKALQPVAIDKIFEFAKVEPT---EFNVLNHGDSWSNN 14 Q9VBS3/16-399 88.8% 20.7% FFK--SKEIMNFFC---DRSAKILLNNIDQYD--GHAAYIKDL---------------EPKSD---EFNALNHGDGWSNN 15 Q9VBS4/16-414 95.9% 21.1% FLR--NEEIVDAFI---NRSIKVFLDNVHLCK--GYETYLNDLRIVSGKTFEIVESLNNPSPD---EFIALNHGDGWANN 16 Q9VBS5/9-403 97.5% 20.6% TYADTMKESIEQVA---ETLGKYFLKCLPLYE--GYEEYSAAVHKMQPKIVDLMYAMNTPDPQ---DFNALNHGDCWTSN 17 Q9VGJ6/46-446 95.4% 23.1% LCS--VVDSLKELR---ENQLKAYIDAFPLYD--AS-HLTNDVQAYGSQADDMFQSFAPKIEG---EFRVLNHGDAWCNN 18 Q9VBT6/3-408 97.0% 23.1% FFNRYTNAYSGYFVGGLLAAARWMSKVPTL------AHYGEKLFALAPHYMDIGRECFAPTPG---QVNVLAHGDVWTNN 19 Q9VBT5/32-436 97.0% 24.1% FFNRYTDNYEPAFVGMLQAATRRVAQWPGY------EKYAEKLKALVPIYMELGKRIFDISPG---HINVLAHGDLWTNN 20 Q9VBM2/136-534 96.4% 23.4% FFNRYTESFSAYFLGCLKSCANYLKTQAGY------EHHAKLLDELAPYYMGLGLRCFKQEQT---HINVLTHGDLWTNN 21 Q9VBT7/31-436 97.0% 24.1% IFNRHTQAFAPFFVNTVGVAADFARECPELG-----ERYATKLKKLQERVMEYSTRVYDPQPG---DFNTLVHGDYWVNN 22 Q9VBT9/3-357 97.5% 20.6% FFNQHTRGYEPIMKNLLMALSRSLELEPDLC-----QRYQAKIDRLVENVMEYGERSTTIVPG---DFLTLAHGDLWTTN 23 Q9VBT8/11-418 97.5% 21.6% FFNKHTRAYAPIMTNLLEALSRSLASDEELG-----QRYKAKIDRLVERLMDYGERSTTSSPG---DFLTLAHGDLWTTN 24 Q9VBU0/8-396 97.5% 22.6% FFNKHVRGYEPIMKNILKALSRTLDLSPDLK-----ERYQAKIDRLIDNVMDYGERSTSVAPG---DFVTLAHGDIWTTN 25 Q9VL46/1-384 86.3% 20.1% FFSRDKKAYSEAYG--------------------------DKLHKLRTHIMEYGARAYDVGES---DLKTLNHGDCWTTN 26 Q9V8Z4/1-405 97.0% 18.6% CFSRDNKGYTEVYEGVLSAFIRFINEQPVLK-----KKYGNKLQKIHENIMDYGARTFEVGEQ---ELLTLSHGDCWTTN 27 O77436/13-421 97.5% 24.1% YIRTNE-RFINFMTLQCRTLANVVSKWPGY------ELLAEKLHRHCDNIKENLVTTGRPLPG---EITVLNHGDLWVNN 28 Q9VMF0/11-422 98.0% 23.5% ILMKSD-TFEQMFGGFLKGLIKSSASWAGY------EKISKHLQRLMDNFRNVCADAPRPRKGD--RYVVLNHGDLWTNN 29 Q9VMF1/1-353 97.0% 20.7% GLAKDDGLLMQFFSGNGKELHHLVSTWPGF------EKIAEKIGKYMQNQRANLERSQAPQEK---EVKVLNHGDLWVNN 30 Q9VWY5/7-417 95.9% 22.5% AINSEP--FKLLFGTQLLKLAALVGDCEGF------GGITTKLYRYHEHFTERVLKAVYPLRG---NHNVLNHGDLWVNN 31 Q9VBT2/16-414 95.4% 16.5% LMEMPSIMSDPMVTTGMDNFLKMMDQIPELTK--YKPHFEKIKENYIQRMGDVMQEYRKNVQSD--GYYVMCHGDFHGRN 32 Q9VBT4/16-400 98.5% 18.5% LFEMPTVKTDPFITTGMQSFIEMLDRLPELRK--YKPHFEKIKDKYMQRLQAVMKEYHENRKSD--AFYVLCHGDFHLRN 33 Q9VBT4/401-777 98.5% 17.0% LFEMPTIDTDPFITTGMTNFIEMLDKMPELRK--YKHHFEKIKDNYMQRLEVEMHEYHKYRRND--RYYVLCHGDFHLRN 34 Q9VBS8/271-651 98.0% 18.0% LFEMPHVLNDPFMRTGMEFFVELLGKEPELNK--YKPYFESIKDDFLERLVEEWKDIRKSQKKD--EYWVLCHGDLHLRN 35 Q9VBS9/12-415 98.5% 15.1% LCEMPGLIDSSIISGGMDPFMEMLGRIPELSK--YQPHFKKISLHFKDRLRETMQEYRNNPQP---GYNVLCHADFHSRN 36 Q9VBS8/1-268 96.4% 16.1% IC----LVDIPYMSSGMGPFKDFLGRIPELDR--YKTHFEKIEVHFIDRLRDIMKEYQTNPQP---GYYVLCHGDYHTRN 37 O17621/8-383 89.8% 13.9% MAGYFQTMVAGIGEKLAQQPGLELVS----------TYIKNTFATDP---KFLQNINDEYLEER--RISVLTHGDLWAPQ 38 O17620/8-390 89.8% 11.4% TVDLFEAMVKTIAENMAKSPGLEIIS----------KYIEKTFDKDP---SFMTKFSDEYLEGK--RKSVLTHGDLWSPQ 39 O45986/8-330 76.1% 10.6% MSGFLQCMVADVGRKLAQNPELGVIL----------SYVENTLDTDP---NYLQKMRDEYINEE--RPSVICHGDLWAPQ 40 Q20974/56-410 95.9% 13.9% LDIVFGQFMDEKSIERMNVLLKASFP-EEYLE--KVEEMLKIYKDYYFQPQMIKNFKNTCQFFG--YKPVLTHSDLWSSN 41 Q9U3D0/65-408 96.4% 11.4% IEEAVKYFFDDQSPDNMRKNLIMILG-VAYEE--KVEEAMDIFDLYCGSSEIQKNYSRVSAFLG--HSPVLMHSDIWPSN 42 Q19034/56-404 94.4% 14.9% IDMMFEEVLSMDQIEGHFDSLRILYG-SEHLN--TVETSITILRQYR---MITKKYTKISELLG--FKLVLNHGDLWQSN 43 Q9N4Y2/69-421 94.4% 11.4% FELMFEEMYPDEQLERVCGVIQATFG-AKNPA--VVEECIKLFWIYK---NSIKSYSKVSELLG--FKLVLNHGDLWQSN 44 Q19030/63-393 94.9% 9.4% LELLFEDFFTDAELSKKFEALKTKFEGQQHAE--KVSKLIKVFAHYK---ALVKKYTNISDLLG--LKPVFIHGDLWQSN 45 P91071/74-423 94.4% 12.9% LEYYYDTFLGAAGVESILDNLRKSLSFCETS---KVEKLIDIYRHYI---KIVSKFSKIDEILG--FHLVPNHGDLWQSN 46 Q9U368/63-422 94.4% 15.4% FKQMMGAMMNEEGMKNIYEQTREINP--ERLT--EKTNTVEAFGLEVVNFELSCNLNKYVGIE----RDVLVHGDLWAAN 47 O44594/72-422 94.4% 13.9% VKQMMGSLMNNEGMKGFYEQTREINR--KRLT--EKTNVVEAFGQEVVNFELACNLNKYIGIK----RDVMVHGDLWAAN 48 Q9XUP8/66-411 93.9% 14.9% FKSMVGRMMSEEGMKQMYTRARQINP--ERLT--KPTDAVEALGMDIVNFEISCHVNKYAGIQ----KNVLVHGDLWAAN 49 Q9XUP2/61-432 94.4% 14.4% FKQMMGTMFNDDGLKGNYKQTRDINP--ERLK--EKTDIVEAFGMEVVNFEFAGNLNKVVGIH----KDVLVHGDLWAAN 50 Q9XUP7/60-422 93.9% 13.9% LKKMSNTIFSEEGMQNNFKQTREINP--ERLK--ESVDKVEIYGTELVDLDKAINLNSYIGIE----RDVLVHGDLWSAN 51 Q9XUP6/53-325 70.1% 8.5% LEKIVGKMFSQNGLNSIFEQVRQINK--EELS--EAADKIAVFGVELS-------------------------------- 52 O61882/71-413 95.9% 15.9% FQETLKMMLSESGIKGIFEQCRNLER--SRFG--EKVDRIEEKRNEILDFEKAFNLNKVVGIK----QNVLCHGDLWAAN 53 Q9VGJ5/161-501 75.1% 14.4% ---------------------------------------TPGKIRELPKLRENSKSDEETAELK--SLYQLRFHESLRSN 54 Q9VBT1/434-841 98.0% 20.6% PISRNPD--RRDFLTFFPVNIRCVAEEVAHWK--GYEEITEKMFNLAENVLQRALTMFESTGK---DFRVFNLTDLWINN 55 Q19647/11-376 97.0% 16.1% LSSWFTTLFTQQNKNTFIGNWKGDLSDWLPSK--VARDTIKELDGLLTPEIFLKLNNDCQLTG---VQEVLCHGDYSFHN 56 Q9VEB7/60-472 98.5% 21.6% IFCTANTSWYRNYYERLTKNAIQMVS--EVLP--PDSKYVLAMNKFAESSSFFGRMVKLASTES--PLSAICHGDCWVNN 57 Q9W3C3/9-425 98.0% 19.4% LEETYYGEHTREWYTGFLLLAENVATDAVKQI--YPNSKYETVATNFLQPPLFDDLINLVSTRS--KLSVFGHGDCWTPN 58 Q9VSS3/31-453 96.4% 17.6% VYCDEATDFYATILDTSVQQALESLGDANADD--CLTTPIRLLEELRTNLFENLKHEINATAAA--PNSVICHGDLWVNN 59 Q9VYW8/222-628 98.0% 19.3% FEQRRDDHALGVYFENLKESALSALLAPADDA--YRVRLEAYFARGSYFELLLPLVSGFNCEP----FAVICHGDCWNNN 60 Q9VW98/4-408 99.0% 21.6% NLFTSDIEEVTIEFGKAQLRKARIILKESDGD--QVAAVQEVLQLCENQLKSLALYCVDGKAQA--PHAVICHGDFWNNN 61 Q9VPY7/6-453 98.5% 15.3% IFDVLYRVAFDRFYEFYDRQKEQLLQGADPGFGAAIERLREKYFKQPTLLLERIRTSSFAEDQPDSHFATFLHGDYNRNN 62 Q20584/117-437 91.9% 12.5% LYSPFKDWFLQLNNGLMALFPDPEMQ-----------KLTETFATTLPEIITADELDLVPCKLG--MKKVFVHGDLWSAN 63 Q9TXV0/15-384 94.4% 15.6% AHGRETFSEGMQNMMFEEALTLENVSPEVFGN----DRIRNIKWSFDYSIKNKATADAISAFPG-----IICHADLNVTN 64 YLK1_CAEE/69-4 88.8% 15.8% WKNYENVLYDAAYIRMLHNDTLDFEKLCP-------AELSGRIQEVKHAFDEDGVRNSEKKNEKLGMPLVICHNDLNASN 65 Q9VIG3/15-404 98.5% 22.0% VVENAYPSDVSPEHMRMVNFQNACLVLKEFIK--LIPKYQSKLDYVLENFTEKMSFIFEAVKTSDVYQNTILHGDLWANN 66 Q9VIG4/623-987 97.0% 16.3% LKEVSVDPEVEWYTTGLRAVLAVAAIHPDVLD---NPEAQEYIAQELPRCLDKVYCMVNPSPVH---RNVFVHRDAWNAN 67 YOK5_CAEE/95-4 91.4% 15.7% ----QKFPFPMELIDTVSNMTDIVKLYVSRNP--ELEEGFSKVEKMYQDRELFTKVLRDSHKSLG-IDDFLCHGDLWFYN 68 Q9XWR4/110-467 89.8% 13.4% LVADLPPSYYAHTIGSFDDTLTFFERQDVDHS-----RFVHIGKYFSDEYLHSTATETTELLDIP---KVLVHGEPYASN 69 Q18739/113-454 93.9% 13.1% NIISFKKKIQKELIEVLETAVTTTEVADYFMN---PSSVIEKVGILTHYLEDWKDEDADEKEK----HNVIAHGRLTAEI consensus/100% ................................................................................ consensus/90% h........................................hh..........................shsHuDhh.tN consensus/80% h.t..t..h...h.......ht.h.............th.thh..........h.............h.slsHGDha.sN consensus/70% hht..t..h.t.hht.h.t.hp.h.t..th......tphhphhtthh.th..hh.....st.t....h.VLsHGDhWssN cov pid 161 . . . 2 . . ] 230 1 Q9VPK3/3-427 100.0% 100.0% MMLKYGMRGE--EGTPLKVKIVDFQIAQYGSLVHDIIFVLFSSVDVNVLEDNFYNFLTIYYNAFIQTLRS 2 Q9VBS7/18-423 97.5% 18.6% IMFNYKDNG-----EIDRTILVDLQVGKWGSPAQDLWYLITTSASLDIKIKEFDHFIQIYHQRLAECLKL 3 Q9VBT1/15-419 96.4% 24.6% IMLSYTQTG-----DINQVRFVDFQLCKWGSPAQDLWELIICSARHSIRIQYFDYFIRIYHTHLVRCLKI 4 Q9VBT0/15-422 97.5% 22.1% LMSSYLPDG-----TLEKLILIDFQIVMWGSPAMDLLFFLTLSPTNDLRIKEFDHFVRIYWERLVECLKV 5 Q9VBT0/435-761 69.5% 14.9% ILFKYNENG---------------------------------APT------------------------- 6 Q9VGJ8/45-455 98.5% 21.6% LLFKMNSSG-----DLEDMVFVDFQNPKYGSPAMDLLYFIISSVQIDYKLSHFDFFIRHYQEALVKHLGI 7 10726466/60-47 98.5% 21.1% LLFKLDSKG-----EVQDMLFVDFQNPKYGSPTQDLFYLILTSVHIDYKLDYFEYFIRHYHEQLTQHLDL 8 Q9VBS6/16-415 95.9% 19.1% VMYQHDAFG-----TIKETLFVDFQVGKYGSPANDLYYLILSSAAPELKTAKFDYLVRYYFDNLIENLKL 9 Q9VBS6/418-786 95.9% 20.1% VMFKFDDSG-----HVEDTALLDYQLVKYGSPAIDLYYTILSSAEKDIKLAQFDNMVQYYFYHLLDNLKA 10 Q9VGJ8/481-883 97.0% 20.1% IMFQYESDG-----RVKETLLLDHQVTKYGNPAQDLYYFIMSSTQLDIKVDQFDYLIRWYHQNMKEHAKL 11 10726466/494-8 94.9% 22.7% IMFQYDAEG-----RLKETYLLDHQNAKYGNPAQDLYYFLISSAELDIKVDEFDNLIRFYHENLVEHTKL 12 Q9VBS1/5-383 97.0% 25.1% IMFQYDESG-----KIKEVYMVDFQVSKYGTVAQDLYYFLISSTKLEDKLSKFDYYVKVYHDNLVEHLKI 13 Q9VBS2/3-337 97.0% 21.6% IMFQYDAFG-----KIKEVYLVDYQLPKYGTVAQDLLYFLLSSTKLEDKLAKFDYYIKIYHDNLVEHLKI 14 Q9VBS3/16-399 88.8% 20.7% IMFQYNDKN-----EISNTYFVDLQLPKWGSVAQDLYYFLLSSTSLDIKTEKFDYFVWFYHSELVKHLKL 15 Q9VBS4/16-414 95.9% 21.1% IMSQYNTKG-----EIQDTYFVDLQVPKWGSVTQDLYYFLLSSTSLDIKTSKFDYFIWFYHSELVKHLKL 16 Q9VBS5/9-403 97.5% 20.6% IMFKYEDESP----EPIETYFVDLQLPKVTSVAYDLIYFLLGSTKFEIQLSQFDYFIKYYHDHLVEHLRM 17 Q9VGJ6/46-446 95.4% 23.1% IMYQYDEAG-----KLAEVNFVDLQMSRFSSPAQDLLYLILSSTELDIKIAKFDYLIKFYHEKLIESLKL 18 Q9VBT6/3-408 97.0% 23.1% VMFKYDPNT----GRPVDVLLIDFQYSFWGSPCIDLHHLFNTSLKEPLRRDQQNGLFQFYHKIFTETLEK 19 Q9VBT5/32-436 97.0% 24.1% VLVKYDKQT----GEPIDVVIIDFQYTAWGSPALDLFYFMNSSLEFDLHQNHQEQLIAYYFRHFADTLKK 20 Q9VBM2/136-534 96.4% 23.4% MMFKYEA------GVPSDVLLIDFQYAFWGSPTLDIHHLLNTSAVEQVRSELQMKMRGVYHDVFVGELQR 21 Q9VBT7/31-436 97.0% 24.1% VMLRYGEN-----KEPLDMTLIDFQFCSWSSPAVDLHYFFNTSVQVDIRYEQQDALFQYYHTVLVETLKD 22 Q9VBT9/3-357 97.5% 20.6% IMFQYDDK-----GHPINAIFIDFQFSAWNSPAIDLHYFFSTALQADIRLKKQPELVQFYYYKLNAALKK 23 Q9VBT8/11-418 97.5% 21.6% FMFQYDAK-----EHPTNAIFIDFQFSVWNSPAIDLHYFFSTSLQDNLRLEHQTELVQFYYYRLTEALRK 24 Q9VBU0/8-396 97.5% 22.6% VMFQYDDE-----GHPVNAIFIDFQFSVWNSPAIDLQYFFSTSIHENLRLERQTELVQFYFYKLVVALER 25 Q9VL46/1-384 86.3% 20.1% IMFQYDDA-----GEPRSVVAIDFQFSNCTSPTIDLHYFFTTSLREEVG-DKESELVEHHYKALKANLEK 26 Q9V8Z4/1-405 97.0% 18.6% FLYQYDDA-----SNPQSAVAIDFQFSNFTSPVNDLHQFFTVSLRDEVQ-DMESVLVEKYYSDLKTNVDT 27 O77436/13-421 97.5% 24.1% FMYKYDDE-Q--PTKPIDAIFVDFQNSFFGSPGCDINFFLNSSVQLDVLIHRREFLIQTYYASLRDSLER 28 Q9VMF0/11-422 98.0% 23.5% FMYGYDNASQ--PDVPTRAIFVDFQLSFYGSPACDLNFFLNTSIKLQLLQERREELIKVYYASFKDALEY 29 Q9VMF1/1-353 97.0% 20.7% MLFKYDGA-----QRPQDLILIDFQLSVWGSPGIDLNYFFYTSLTLEVLRHRRTQLLRTYHARLAKTLLD 30 Q9VWY5/7-417 95.9% 22.5% IFFKYDAE-----YTVQQVKIIDFQLCFYGSLGFDINYFLNTSLELEVLRDRRQELVDIYYRSLVDCLKH 31 Q9VBT2/16-414 95.4% 16.5% MMFNKN----------EEVMFVDFQICNLCPITIDLSYSVYMLMEPEQRWDLGKDLINFYFSVLEDTLKK 32 Q9VBT4/16-400 98.5% 18.5% MMFKNNKGT----GAHEDTMLVDFQISNLCPITIDLTYSIYMLMEPEQRREMGKDLINHYLTVLVATLKS 33 Q9VBT4/401-777 98.5% 17.0% MMFRHNKEL----GAYDDVMLVDFQLSNLCPITVDLTYSVYMLMEPEQRWEMGENLINEYFSVLVATLRK 34 Q9VBS8/271-651 98.0% 18.0% IMFKHKDTV----S-LEDCMLLDFQISNLFPLTFDLLYSIYMLLEPEHRWNNWDDLINYYISVLQDVLKK 35 Q9VBS9/12-415 98.5% 15.1% MMFKNNKET----GCFEDCMLLDYQGCNVAPMAVDLMYSIYMLMGPAQRREELDILLNYYLSILLETLKK 36 Q9VBS8/1-268 96.4% 16.1% IMVKHNKES----GGFEDCMLLDYQGCYVAPLAFDLMYSIYMLMNREQRIGELETLLNYYFSVLRETLRK 37 O17621/8-383 89.8% 13.9% ILWDKNDD---------IAGIIDWQITHRGSPMEDFHHIMSTCTSVENRKNLTKPLLDYYFDKLSSGLEA 38 O17620/8-390 89.8% 11.4% ILWDKDDN---------IAGIIDWQVGHQGSPMEDLHRILSTGTSVENRNKLTKPLLDHYFEKLSAGLEE 39 O45986/8-330 76.1% 10.6% ILWDKEDN---------IAGIVDWQATHRGSPMEDLHHILSTCTSVQNRKTFTKPLLDHYYNKLKVGLKE 40 Q20974/56-410 95.9% 13.9% FLCTRDGE------KVTLKAIIDFQTVSITTPAQDVGRLFASCLSTKDRREKADFLLEEYYNTFVNELDG 41 Q9U3D0/65-408 96.4% 11.4% LLFSLSSEN-----KLEFKALIDFQTASLSSPGLDVGCLTVTCLSKKDRRTVQSEILDRYYKSFVKSLKT 42 Q19034/56-404 94.4% 14.9% MLHCLDEFG-----NLKLKAIIDWQGVSTLPPGLDLSRLLMGCLSAHERRERGLEMLKLYHETFNQVLGK 43 Q9N4Y2/69-421 94.4% 11.4% MLHCLDEHG-----NLVLKAIIDWQGVSMLPPGLDLARLLMGCLTAYERRERGAELLMLYHQTFTGIVGE 44 Q19030/63-393 94.9% 9.4% IMFTLDNSK-----KLKLEAIIDWQSVSRIPPGIDLSRIMLGCLSAQERRERGTELLKLYHETYAKVFGK 45 P91071/74-423 94.4% 12.9% MLFNTEESG-----HLKLKALIDWQAVANLPPGFDMVRLFIGALSIEDRRQRASEFLKIYHETFTTVFGS 46 Q9U368/63-422 94.4% 15.4% ILWKEENDG-----KFSVSKVIDYQLIHMGNPAEDLVRVFLSTLSGADRQAHWERLLEQFYEYFLEALGD 47 O44594/72-422 94.4% 13.9% ILWKEKDEG-----TFSVSKVIDYQLIHMGNPAEDLVRLFLSTLSGADRQAHWERLLEKFYTYFLAALGD 48 Q9XUP8/66-411 93.9% 14.9% ILWKE-NDG-----NCVASKVIDYQLIHMGNPAEDLVRVFLSTLSGADRQAHWEKLLEQFYEYFLEALEG 49 Q9XUP2/61-432 94.4% 14.4% ILWNE-NDG-----KFSASKVIDYQIIHMGNPAEDLVRVFLCTLSGADRQAHWEKLLEQFYEYFLEALED 50 Q9XUP7/60-422 93.9% 13.9% ILWEE-NEG-----KFLVSKVIDYQLIHMGNPAEDLVRLLLCTLSGADRQAHWERLLEQFYEYFLEALQD 51 Q9XUP6/53-325 70.1% 8.5% --------------------------IHLGNPAEDLVRLFISTLSGSERQKYWEKLLEQFYEYFIEALED 52 O61882/71-413 95.9% 15.9% FLWTE-NNG-----VFCATRIVDYQMSHLGNPAEDLVRLLVSTITGADRQAHWQQILEQFYSYFLNELGS 53 Q9VGJ5/161-501 75.1% 14.4% DARQYEDKVVDAFGNVKDTLFSGFHTAQYGPAVYDLFSSLLTAPAE--KSSRFDGYVKFYHDQLIENLNL 54 Q9VBT1/434-841 98.0% 20.6% LLFHINNETK----EPDDVVTLDFQLAYVGSPTIDLNYFLYGSLNENVRKVHYKYIVREYQRVLQQTLEK 55 Q19647/11-376 97.0% 16.1% LLYEKHCDG-----SYKFRAIVDFQSVNWGNAAQDLSRLFVTAMSGKDRRDSEDRLLKIYYDELIKVSKG 56 Q9VEB7/60-472 98.5% 21.6% FLYHYDPEDP---HRVLEVALLDFQLIRYSSIALDIANLLYCCTTKEMRDAQLQTLLKIYTEELFRWLQM 57 Q9W3C3/9-425 98.0% 19.4% FLTKYNERG-----QSEEIIIIDFQLARCSSLALDLSFFIYSCTSQELREQHYDELLRAYLESAQDLIQD 58 Q9VSS3/31-453 96.4% 17.6% IMFRSEPEE---------VIFFDLQAMRKSSPIFDILHFIYTSTRRPLRDVHTDTLLAAYSQALSEELRH 59 Q9VYW8/222-628 98.0% 19.3% ILYKSTERG-----ELEDVRLIDWQLMRYASPVTDLAYFLFTCTSRRFRQRHLENMLEDYYEELGLQLIR 60 Q9VW98/4-408 99.0% 21.6% ILYRHEPNSD----QPVEAKLIDFQMSRYAPPVLDIVHYLFACTEKRLRDEHFPDFMDAYYNTMDQKLKS 61 Q9VPY7/6-453 98.5% 15.3% VLFHYGAED-----KVDAIKAIDFQELRFSTTAIDLSFFMYMNTPSEGRKEIYADLLRKYHRSMIEMLEL 62 Q20584/117-437 91.9% 12.5% IMWNQEGHL---------KKLIDFQMIHFGLAATDLARVMNTCLSPEERHANKEKYLKHYFDCLTKHCKE 63 Q9TXV0/15-384 94.4% 15.6% VLWKKDSAK------DEISAIIDYQMLFIGSIAFDIIRVLTLGLNREIRRKMTQNYLDHYHKTLTELSNG 64 YLK1_CAEE/69-4 88.8% 15.8% VLWNNETGK--------IQAFIDFQHVSKGPVSFDIIRILCLGLSVENRRANTQRYLNHYYTTFKSHFST 65 Q9VIG3/15-404 98.5% 22.0% IMFQYGRYG----EVPLQCRLVDFQLARYAPPVLDVLTVLTIPTSKEFRDAHLSELLAEYYRFMTEFLKR 66 Q9VIG4/623-987 97.0% 16.3% VFYHKEKPHE------ERSILVDFQLCRYSPPAMDFHLVTYLNLEPFSRKKMIGSLIETYYDALAEEFRE 67 YOK5_CAEE/95-4 91.4% 15.7% LMWIPRKSGSE-VASNHLGSIIDWQNVHTGNICEDFCHMLTFCCDTEIRRQAENTFLPYYYNQLKAKAVE 68 Q9XWR4/110-467 89.8% 13.4% VFTKMEGKE------QRILSLIDWTEGHSGCFAEDVAKIICWNLNAKERVDNTSSLLEGYHFHLARYYDG 69 Q18739/113-454 93.9% 13.1% CRFDEDGN---------LVEITEWENIHLGNPVEDLANLIVSSADVDIRRKKFMKIFQVYFYALVDYYPP consensus/100% ...................................................................... consensus/90% hhhp.t.............hhlDhQ...hss.s.Dl.h.h..shp.t.t.t....hlt.ah..h.t.ht. consensus/80% hhap.ptt..........hhhlDaQh.thss.s.Dlhhhh..shp.p.+.t.hp.hlphYap.hhp.lp. consensus/70% hhaphppp......t...shhlDaQhsphusss.DLhhhhhsshphp.+.pphpthlphYapthhptLct