cov pid 1 [ . . . . : . . . 80 1 Q98K65 100.0% 100.0% VKYKATLDGGQ--QNPPVT-TKGKGT--------ATLTFD-TTKKKLSWDVKYSGLSGP-------------ATAAHIHG 2 Q89HT0 98.3% 60.7% EKLKATLDGKS--EVPATT-TSGTGT--------ADLDYD-AASKKLSWKVTYSGLSGP-------------ATAAHFHG 3 ZP_0003424 100.0% 53.8% VALKADLEPSS--EVPPRV-SHGHGM--------LNATFD-TSTKSLQWTVTYEGLSGP-------------ATAAHFHG 4 Q8G3C7 100.0% 42.4% LHFKAELTPQA--EVPAVHNSRGKGS--------VEVHFD-TRTRRLVWQSEQSGLSGP-------------ATMAHFHG 5 Q8YEF8 100.0% 42.4% LHFKAELTPQA--EVPAVHNSRGKGS--------VEVHFD-TRTRRLVWQSEQSGLSGP-------------ATMAHFHG 6 00073785_1 96.6% 24.1% FGPSLFISEQQ--EVPPVEDSPAVGG--------FTALLL---DNILLIDGKFKELSSPLLPLGGVDSEENIESPIHLH- 7 00073785_2 97.4% 21.6% FGLGLPMSESF--EVPPVADSPAEGI--------INATLD---DNTLIIQGTFSGLSSDLFSVGGTDLEGNAESSVHLH- 8 00073785_3 96.6% 19.4% VGF-LPMLESQ--VVDLDSNTQAGGV--------FSSELL---GNNFNIFGRFFGLSSDLFNVGEQDSEGNSQSSAQLY- 9 NP_653651 98.3% 26.3% THFFARLTGKR--EIPPVN-TEAYGV--------AEFIFS-EDLKKLQYRVILKNIEKVTSCQILGKSDQIGPIVLSLLG 10 Q9XBH6 98.3% 26.3% TFFFARLTGKR--EIPPVN-TEAYGV--------AEFIFS-EDLKKLQYRVILKNIEKVTSCQILGKTDQIGPIVLSLFG 11 Q9L4R9 98.3% 23.3% THFFARLTGKR--EVPPVN-TEAFGV--------AEFIFS-DDLTKLHYRVILKNIEKVTSCQILGKSTQIGPVVLYLYG 12 NP_844716. 96.6% 23.9% -MFFAKLRGRN--EVPPVE-TDARGE--------AFFKLS-RDELSLKFKLDLFDIEDV--------------VAAHLHI 13 CHRD_HUM_3 94.0% 20.6% DVLQSVLCGAA-DALIPVQ-TGAAGS--------ASLTL--LGNGSLIYQVQVVGTSS-----------------EVVA- 14 CHRD_XEN_3 88.8% 15.3% DTLQSVLSGG--------D-AGAVGS--------ASITL--HENGTLEYQIQIAGTMS-----------------TVTA- 15 CHRD_HUM_4 92.2% 25.8% DTLPVPLAGA---VLPPVK-SQAAGH--------AWLSL--DTHCHLHYEVLLAGLGGSEQGT----------VTAHLL- 16 CHRD_XEN_4 96.6% 27.8% EKLPVPLAGQ---VSPPIR-TGSAGH--------AWVSL--DEHCHLHYQIVVTGLGKAEDAA----------LNAHLHG 17 18858413/2 93.1% 17.1% ETFSAILTS------DEVH-SGMGGI--------AMLTLS-DTENNLHFILIMQGLVPPGSSK----------VPVRVK- 18 CHRD_HUM_2 95.7% 16.9% ETFSAILTLE-----GPPQ-QGVGGI--------TLLTLS-DTEDSLHFLLLFRGLLEPRSGG---------LTQVPLR- 19 CHRD_XEN_2 93.1% 17.7% ESFSALLTPE-----DSDE-TGGGGL--------AMLTLS-DVDDNLHFILMLRGLSGEEGDQ------------IPIL- 20 CHRD_HUM_1 87.9% 15.1% TDFVALLTG--------PR-SQAVAR--------ARVSL---LRSSLRFSISYRRLD----------------RPTRIR- 21 CHRD_XEN_1 93.1% 18.0% SEYVALLTAPS--HVWPPV-TSGVAK--------ARFNL---QRSNLLFSITYKWID----------------RLSRIR- 22 SOG_1 94.8% 12.0% TSYFLKGEEMK-SYTTYNP-QNVVAT--------ARFLF---HKKNLYYSFYTSSRSRIG-------------RPRAIQ- 23 38106443 97.4% 18.3% STYNLVATPDKVINNDGQV-APGEAGAIG--FYNYGINV---DLDIICYNITLMGVTGPYQSP--------ATTATHIH- 24 38105449 95.7% 13.7% STYSVLATPDQVV--NASN-VATGGLEGAKGWFLYGINA---DEDVICYNITTQGFRGDYQSP--------AVTATHIH- 25 BAC72577 97.4% 27.3% AILAASLRGAN--EVPVAG-GPAVGDK-----DGAALEFIRVKGDTVSVAVTWRGTGKP--------------TLLHIH- 26 ZP00093828 95.7% 25.2% VAKPVTLTASL--ETGGGD-ADGVGG--------FKVEAD-DDSGDFCFTLWAEKIAAP--------------TMAHVH- 27 SOG_4 95.7% 14.9% SAEPILLKRQ---HTDAQN-PHAVGM--------AWMSI--DNECNLHYEVTLNGVPAQ---------------DLQLYL 28 SOG_3 86.2% 16.9% EIFQTLLA---------SS-TKSSGL--------AWVYL--NTDGSLAYNIETEHVNTRDRP--------------NIS- 29 15077351/1 95.7% 19.0% NLLQAVLSGSN--CKPTTN-TGSVGS--------AVFNV--NSDNTISYQVFLSGLSSE----------------VTLL- 30 SOG_2 97.4% 10.0% ELFSSLLEAPLPGKTDPQL-AGAGGT--------AIVSTSSGAASSMHLTLVFNGVFGAEEYAD---------AALSVK- 31 44260866 97.4% 25.8% EVYRARLSPMPTTPQTVTT-ILGEGE--------VILTL---NGNSLTVEGNFSGMSSA-------------ATGAHIH- 32 44398815/3 95.7% 32.5% EVYGIIANGLQ--EVPAVT-TTASGA--------GAFTL-NTSTGALSGSVTITGMTAN---------------MAHIH- 33 41725605 96.6% 34.7% SPISISLTGAA--EVPPVT-TAATGM--------VTINV--LPNRTVSGSIDTKGMV---------------PTMAHIH- 34 37520434 95.7% 20.8% PTLSAILLGGN--EVSSTG-QANAGDQD--GIGFIHVRI-DPAKGQACYSLRVDNLGKP--------------TVFHIH- 35 23039664 97.4% 21.6% QEFKAFLDSS---QNDGVE-SDATGI--------ATFRL-NADQTEIEYTIELNGIDLIEDPA--ERTADNAVTKINLH- 36 23039661 95.7% 20.4% QEFKAFLDSS----QNGVD-SDATGL--------ATFSL-NAEQTEIEYTIELNGLDLIEDPV--KRTAENAITEIHFH- consensus/100% ......h.................u.........h...h.......h.h......h.....................h.. consensus/90% ..h.h.ht............t.s.u.........h.h.h.....tth.h.h.h.th...................h.hh. consensus/80% .hh.h.Lps......ssst.stuhG.........h.hph...ttpplthpl.hpshtt.................hplh. consensus/70% tth.shLsst.....sssp.stuhGh........s.hph...ppsplpapl.hpulst...............h.hplp. cov pid 81 . 1 . . . . : . 160 1 Q98K65 100.0% 100.0% -PAAMGANAA------PVIPFKGK---------------------LKSPIKGSA----TLTDAQAADLAA----GNYYVN 2 Q89HT0 98.3% 60.7% -PAEAGKAG-------VAIAIPNAT---------------------SSPVEGSA----TLTDAQAADLLA----GKLYVN 3 ZP_0003424 100.0% 53.8% -PAPVGQNAK------VQVPIDKNA--------------------LASPIKGSA----ALTEQQVTDLMA----GQWYFN 4 Q8G3C7 100.0% 42.4% -PADPTKNAN------VQIPVSAGQ--------------------LGHKGRGDV----KLTNEQAKQLMD----GLWYFN 5 Q8YEF8 100.0% 42.4% -PADPTKNAN------VQIPVSAGQ--------------------LGHKGRGDV----KLTNEQAKQLMD----GLWYFN 6 00073785_1 96.6% 24.1% -QGEIGQNGGIV----RNLNRFEIDD-------------------RSGRFNGAF----TLTDPELETAKA----DAFYIN 7 00073785_2 97.4% 21.6% -QGLANSTGGIA----RNFNVTDNGD-------------------GSGGFLGSF----SLSDDEVVAAKS----GNFYVN 8 00073785_3 96.6% 19.4% -LGEIGENGAFL----RNLTVFETDG-------------------NSGFFSGNF----TLDETEVAAVES----GGVYIN 9 NP_653651 98.3% 26.3% -PLKQGISVNEG----VVTGVVNVEE-------------------FEGPLQG------RAFDSLLQEIIQ----ANVYVN 10 Q9XBH6 98.3% 26.3% -PLKQGISVNEG----VVTGVVNVGD-------------------FEGPLQG------RAFDSLLQEIIQ----ANVYVN 11 Q9L4R9 98.3% 23.3% -PLEQGISLNEG----SITGVVNVED-------------------FEGPLQG------KSFVHLLQEIIQ----ANVYVN 12 NP_844716. 96.6% 23.9% -GAKGTNGPVVA---FLFGPITNPVSIECAT---------LTGMITQEDLVG------PLAGQTLGTLINEIISGNIYIN 13 CHRD_HUM_3 94.0% 20.6% --MTLETKPQRRD---QRTVLCHMAGLQ----------------PGGHTAVGIC---PGLGARGAHMLLQ----NELFLN 14 CHRD_XEN_3 88.8% 15.3% --VTLETKPRRKT---KRNILHDMSKD-----------------YHDGRVWGYW---IDANARDLHMLLQ----SELFLN 15 CHRD_HUM_4 92.2% 25.8% -----GPPGT----PGPRRLLKG---------------------FYGSEAQGVV---KDLEPELLRHLAK----GMASLL 16 CHRD_XEN_4 96.6% 27.8% -FAELGEVGESS--PGHKRLLKG---------------------FYGSEAQGSV---KDLDLELLGHLSR----GTAFIQ 17 18858413/2 93.1% 17.1% --LQYRQHL-------LREIRANITA-------------------DDSDFAEVL---ADLNSRELFWLSR----GQLQIS 18 CHRD_HUM_2 95.7% 16.9% --LQILHQGQL-----LRELQANVSA-------------------QEPGFAEVL---PNLTVQEMDWLVL----GELQMA 19 CHRD_XEN_2 93.1% 17.7% --VQISHQNHV-----IRELYANISA-------------------QEQDFAEVL---PDLSSREMLWLAQ----GQLEIS 20 CHRD_HUM_1 87.9% 15.1% ---FSDSNGSV----LFEHPAAPT---------------------QDGLVCGVW---RAVPRLSLRLLRA----EQLHVA 21 CHRD_XEN_1 93.1% 18.0% ---FSDLDGSV----LFEHPVHRMGS------------------PRDDTICGIW---RSLNRSTLRLLRM----GHILVS 22 SOG_1 94.8% 12.0% ---FVDDAGVILEEHQLETTLAGTLSVY---------------QNATGKICGVW---RRVPRDYKRILRD----DRLHVV 23 38106443 97.4% 18.3% -EAAEGAAGP------PRISFPNPEPADSGPEVVKRSSGCLTGPFTTGIQANGQ---DTGTGFTLRQIEAN--PAGFFTD 24 38105449 95.7% 13.7% -QGEKGKNGP------PRIAFPNPEPIGN--GDMRRSLGCLKGPFRTGVMADGR---DTGEGFTVSMIEKD--PAGFFTD 25 BAC72577 97.4% 27.3% -QGAKGTNGGVKI--FSELLEKGVR---------------------HHSVVGSV---KVKDAALLSQLKTD--PGAFYAN 26 ZP00093828 95.7% 25.2% -EGAAGAGK-------PVATIEV-----------------------TGKDSDAC---VAMEPELIKKILAA--PGDYYVN 27 SOG_4 95.7% 14.9% EEKPIEAIGA----PVTRKLLEE---------------------FNGSYLEGFF---LSMPSAELIKLEM----SVCYLE 28 SOG_3 86.2% 16.9% ---LIEEQGK------RKAKLEDLTPS-----------------FNFNQAIGSV---EKLGPKVLESLYA----GELGVN 29 15077351/1 95.7% 19.0% -QMTAAYTKK------RSRVILDLTPQ-----------------FHNGVSEGLL---KEVSAKELHSLLS----DKVAVM 30 SOG_2 97.4% 10.0% --IELAERKEV-----IFDEIPRVRKPS-----------------AEINVLELS---SPISIQNLRLMSR----GKLLLT 31 44260866 97.4% 25.8% -NGPPAQPGP------VIHTLEVSQS-------------------TEGELSGTL----SLSDEQVAALSN----NEFYIQ 32 44398815/3 95.7% 32.5% -EGEMGVNGD------VLIGLTAGTSG-------------------MWSVPANT----TLTAEQMNVMAD----GGLYTN 33 41725605 96.6% 34.7% -EGAVGKNGP------PIITLIRKDD-------------------NTFTIPADA----KFSDAQYTSYLA----GNLYVN 34 37520434 95.7% 20.8% -NAKAGVNGS------VVVDLVPPDS--------------ADPGSINKCVPAD-----PAVAEQILNQP-----LEFYVN 35 23039664 97.4% 21.6% -HRDYGINGD------HVFNIFGVASEDDN-XX-----GDDILDGEIAILPPAQRSATTPVTTSLVHLFH----GNLYVQ 36 23039661 95.7% 20.4% -HRGYGTDGS------HVLNVFG-TPSEDD-XX------GDIPAGEIAILSPAQMPGTTPVTTSLFNLFH----GNLYVQ consensus/100% ................................................................h...........h.h. consensus/90% .....t..............h............................h.t.......h....h..h......s.h.ht consensus/80% ..h..s.ts.........h.h.t.......................tt.h.s......thsst.ht.l.t....uthhhs consensus/70% ..hthstsst......h.hsl.s.t.....................ts.h.ush....shsspplt.lht....uphals cov pid 161 . ] 179 1 Q98K65 100.0% 100.0% VHTAANKDG--EIRGQIEA 2 Q89HT0 98.3% 60.7% IHTAANPGG--EIRGQVTK 3 ZP_0003424 100.0% 53.8% VHTAQNPMG--EIRGQVLP 4 Q8G3C7 100.0% 42.4% YHTKAHPGG--EIRGQVLR 5 Q8YEF8 100.0% 42.4% YHTKAHPGG--EIRGQVLR 6 00073785_1 96.6% 24.1% LHTENNPSG--ELRGQVN- 7 00073785_2 97.4% 21.6% LHTENNLGG--ELRAQVLV 8 00073785_3 96.6% 19.4% LHTQNNQSG--ELRGQVIL 9 NP_653651 98.3% 26.3% VYTKSNKKG--EIRGRIRK 10 Q9XBH6 98.3% 26.3% VYTKSNKKG--EIRGRIRK 11 Q9L4R9 98.3% 23.3% VHTKSQKRG--EIRGRVRK 12 NP_844716. 96.6% 23.9% VHTVQHPNG--EIRGQLNY 13 CHRD_HUM_3 94.0% 20.6% VGTKDFPDG--ELRGHVAA 14 CHRD_XEN_3 88.8% 15.3% VATKDFQEG--ELRGQITP 15 CHRD_HUM_4 92.2% 25.8% ITTKGSPRG--ELRGQVHI 16 CHRD_XEN_4 96.6% 27.8% VSTKLNPRG--EIRGQIHI 17 18858413/2 93.1% 17.1% VQTEGQTLR--HISGFISG 18 CHRD_HUM_2 95.7% 16.9% LEWAGRPGL--RISGHIAA 19 CHRD_XEN_2 93.1% 17.7% VQTEGRRPQ--SMSGIITV 20 CHRD_HUM_1 87.9% 15.1% LVTLTHPSG--EVWGPLIR 21 CHRD_XEN_1 93.1% 18.0% LVTTTLSEP--EISGKIVK 22 SOG_1 94.8% 12.0% LLWGNKQQAELALAGKVAK 23 38106443 97.4% 18.3% SHTAVSVPG--VVRAQMVA 24 38105449 95.7% 13.7% SHSSLAVAG--AFRGQLGC 25 BAC72577 97.4% 27.3% LHTAQFPGG--AVRGQLHK 26 ZP00093828 95.7% 25.2% VHTGDFPKG--AIRGQLQK 27 SOG_4 95.7% 14.9% VHSKHSKQL--LLRGKLKS 28 SOG_3 86.2% 16.9% VATEHETS---LIRGRLVP 29 15077351/1 95.7% 19.0% AQTKANKQC--EINGNVAS 30 SOG_2 97.4% 10.0% VESKKYPHL--RIQGHIVT 31 44260866 97.4% 25.8% IHSESNPPG--ELRGWVFL 32 44398815/3 95.7% 32.5% FHSDAFPSG--EIRGQITL 33 41725605 96.6% 34.7% VHSQAYPNG--EIRAQLPG 34 37520434 95.7% 20.8% FHTEEFPDG--ALRGQLFY 35 23039664 97.4% 21.6% VQTKQNFDP-GDIRGQILP 36 23039661 95.7% 20.4% VHTNQNPEP-GDIRGQVLP consensus/100% ............h.u.h.. consensus/90% h.ott......tlpG.l.. consensus/80% ltott..ts..tlpGplh. consensus/70% lpTptp.tu..clRGplhh