Family alignment for the CLa domain, displayed in

                    cov    pid   1 [        .         .         .         .         :         .         .         . 80 
1 CLUS_BOVIN     100.0% 100.0%     NVMPFPLLEPF-NFHDVFQPFYDMIHQAQQAMDAHLQRTPYHFPTMEFTEN-----------NDRTVCKEIRHNSTGCLR    
2 CLUS_CANFA      99.5%  71.5%     NIIPFPRFQPL-NFHDMFQPFFDMIHQAQQAMDVNLHRIPYHFP-IEFPEE-----------DNRTVCKEIRHNSTGCLK    
3 CLUS_MOUSE     100.0%  61.1%     SLMSPSHYGPP-SFHNMFQPFFEMIHQAQQAMDVQLHSPAFQFPDVDFLREG---------EDDRTVCKEIRRNSTGCLK    
4 CLUS_RAT        99.5%  62.5%     SLMPLSHYGPL-SFHNMFQPFFDMIHQAQQAMDVQLHSPALQFPDVDFLKEG---------EDDPTVCKEIRHNSTGCLK    
5 CLUS_HUMAN     100.0%  64.8%     SLMPFSPYEPL-NFHAMFQPFLEMIHEAQQAMDIHFHSPAFQHPPTEFIREG---------DDDRTVCREIRHNSTGCLR    
6 CLUS_COTJA      99.5%  47.7%     ELHPFFQHPMH-GFHRLFQPLFEMTQHMLDGGHGAWEHPLGGFATESRNFS-----------TDRMVCREIRRNSAGCLR    
7 Q29482         100.0%  72.7%     NIMHFPMYRHL-NFNDMFQPFFDMIHQAQQAMNLHLHRLPDQLPMTEFSEGD---------NHDRTVCKEIRHNSTGCLK    
8 Q29549         100.0%  78.4%     NIMPFPLFTDL-NYHDMFQPFFDMIHQAQQAMDAHLHRIPYHFPEAGVPEN----------SNDRAVCKEIRHNSTGCLR    
9 Q15846          98.1%  23.3%     TKADLEQCWDIPNFFQLFCNFSVSIYESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFK    
  consensus/100%                   phh....h....sa.thFpsh...h.p..pth.hth.p...ths..th..t...........ps.hlCtElcpN.stCh+    
  consensus/90%                    phh....h....sa.thFpsh...h.p..pth.hth.p...ths..th..t...........ps.hlCtElcpN.stCh+    
  consensus/80%                    slhsh..h..h.sFaphFQPFh-MIapu.puhphphpp...phP..ph..p...........pDRsVC+EIR+NSoGCL+    
  consensus/70%                    slhshs.atsh.sFHshFQPFa-MIHpAQQAMcsphcp.shpaP.h-h.cp...........sDRsVC+EIR+NSTGCL+    

                    cov    pid  81          .         1         .         .         .         .         :         . 160
1 CLUS_BOVIN     100.0% 100.0%     MKDQCEKCQEILEVDCSASNPTQTLLRQQLNASLQLAEKFSRLYDQLLQSYQQKMLNTSALLKQLNEQFTWVSQLANLTQ    
2 CLUS_CANFA      99.5%  71.5%     MKDQCEKCQEILSVDCSSNNPAQVQLRQELSNSLQIAEKFTKLYDELLQSYQEKMFNTSSLLKQLNEQFSWVSQLANLTQ    
3 CLUS_MOUSE     100.0%  61.1%     MKGQCEKCQEILSVDCSTNNPAQANLRQELNDSLQVAERLTEQYKELLQSFQSKMLNTSSLLEQLNDQFNWVSQLANLTQ    
4 CLUS_RAT        99.5%  62.5%     MKGQCEKCQEILSVDCSTNNPAQANLRQELNDSLQVAERLTQQYNELLHSLQSKMLNTSSLLEQLNDQFTWVSQLANLTQ    
5 CLUS_HUMAN     100.0%  64.8%     MKDQCDKCREILSVDCSTNNPSQAKLRRELDESLQVAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQ    
6 CLUS_COTJA      99.5%  47.7%     MRDECEKCREILAVDCSQTDPVQSQLREQFEDALRLAERFTRRYDDLLSAFQAEMLNTSSLLDQLNRQFGWVSRLGNLTQ    
7 Q29482         100.0%  72.7%     MKDQCEKCQEILSVDCSTNNPSQMQLRQELNNSLQLAEKFTKLYDELLQSYQEKMLNTSSLLKQLNEQFSWVSQLANLTQ    
8 Q29549         100.0%  78.4%     MKDQCEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQLNEQFSWVSQLANLTQ    
9 Q15846          98.1%  23.3%     FHEKCQKCQAHLSEDC----PDVPALHTELDEAIRLVNVSNQQYGQILQMTRKHLEDTAYLVEKMRGQFGWVSELANQAP    
  consensus/100%                   h+tpCpKCpthLt.DC....ss...L+pph.tulphsph.sp.YtplLp.hp.ch.sTu.LlcphptQFsWVSpLuN.s.    
  consensus/90%                    h+tpCpKCpthLt.DC....ss...L+pph.tulphsph.sp.YtplLp.hp.ch.sTu.LlcphptQFsWVSpLuN.s.    
  consensus/80%                    M+spC-KCpEILuVDCStssPsQ.tLRppLppuLplAE+hop.YspLLpuhQt+MhNTSuLLcQLNcQFsWVSpLANLTQ    
  consensus/70%                    MK-QCEKCpEILSVDCSssNPsQspLRpELssSLQlAE+hoc.YspLLpSaQpKMLNTSSLLcQLN-QFsWVSpLANLTQ    

                    cov    pid 161          .         .         .         2         .         .        ] 229
1 CLUS_BOVIN     100.0% 100.0%     SDDQHYLQVFTVN-SHNSDPSIPSG--LTKVIVKLFNSFPITVTVPQEVS--SPNFMENVAEKALQQYR    
2 CLUS_CANFA      99.5%  71.5%     SEDPFYLQVTTVG-SQTSDSNVPVG--FTKVVVKLFDSDPITVMIPEAVSRNNPKFMETVAEKALQEYR    
3 CLUS_MOUSE     100.0%  61.1%     GEDKYYLRVSTVT-THSSDSEVPSR--VTEVVVKLFDSDPITVVLPEEVSKDNPKFMDTVAEKALQEYR    
4 CLUS_RAT        99.5%  62.5%     GDD-QYLRVSTVT-THSSDSEVPSR--VTEVVVKLFDSDPITVVLPEEVSKDNPKFMDTVAEKALQEYR    
5 CLUS_HUMAN     100.0%  64.8%     GEDQYYLRVTTVA-SHTSDSDVPSG--VTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYR    
6 CLUS_COTJA      99.5%  47.7%     GND-GFLQVTTVF-SKTPNLEDPSAPADTQVTVQLFDSEPLSLTVPGDISWDDPRFMEIVAEQALQHYK    
7 Q29482         100.0%  72.7%     GEDQYYLQVTTVS-SHNSDSEVPSG--LTRVVVKLFDSYPITVTVPEVVSRNNPKFMETVAEKALQEYR    
8 Q29549         100.0%  78.4%     NDDRYYLQVTTVN-SHGSDPSVPSG--LTKVVVKLFDSYPITLIIPQEVS--DPKFMETVAEEALQQYR    
9 Q15846          98.1%  23.3%     ETEIIFNSIQVVPRIHEGNISKQDE--TMMTDLSILPSSNFTLKIPLEESAESSNFIGYVVAKALQHFK    
  consensus/100%                   tp-..a.pl.sV...ptss.p..st...h.s.lplhsS.sholhlP...S..sspFht.VstpALQpa+    
  consensus/90%                    tp-..a.pl.sV...ptss.p..st...h.s.lplhsS.sholhlP...S..sspFht.VstpALQpa+    
  consensus/80%                    spD.haLpVpTVs.o+sus.phPst..hTpVsVpLFsS.PlTlhlP.tlS..sPpFM-hVAEcALQpY+    
  consensus/70%                    u-D.hYLpVoTVs.oHsSDsplPSt..hTcVlVKLFDS.PITlhlPt-VShpsP+FM-sVAEKALQcYR