cov pid 1 [ . . . . : . . . 80 1 Q9PTJ8/93-236 100.0% 100.0% GKKCVVIDLDETLVHS--------------SFKPISNADFIVP------------------VEIDG--TIHQVYVLKRPH 2 O15194/169-312 100.0% 99.3% GKKCVVIDLDETLVHS--------------SFKPISNADFIVP------------------VEIDG--TIHQVYVLKRPH 3 O95476/60-212 99.3% 42.9% KRKILVLDLDETLIHS------HHDGVLRPTVRPGTPPDFILK------------------VVIDK--HPVRFFVHKRPH 4 10257407/89-23 100.0% 86.8% DKICVVIDLDETLVHS--------------SFKPVNNADFIIP------------------VEIDG--VVHQVYVLKRPH 5 Q9VRG7/59-211 99.3% 42.2% QRKTLVLDLDETLIHS------HHNAMPRNTVKPGTPHDFTVK------------------VTIDR--NPVRFFVHKRPH 6 Q9XYL0/135-278 100.0% 71.5% GLKTLVLDLDETLVHS--------------SFKPVHNPDFIVP------------------VEIEG--TIHQVYVVKRPF 7 O14595/100-243 100.0% 87.5% GRICVVIDLDETLVHS--------------SFKPINNADFIVP------------------IEIEG--TTHQVYVLKRPY 8 Q20432/56-208 99.3% 42.9% KRKILVLDLDETLIHS------HHDGVLRQTVKPGTPSDFTIR------------------VVIDR--HPVKFSVHERPH 9 Q9V4W8/9-168 99.3% 36.6% GRKTLVLDLDETLVHSCYLDPDTHDNVGCSQLPEHAQPDYVLN------------------ISIDG-MEPIVFRVFKRPH 10 BAB02545/87-24 92.4% 17.6% KKLHLVLDLDLTLIHSVRVPCLSEAEKYLIEEAGSTTREDLWKMKVRGDPIS----------------ITIEHLVKLRPF 11 CAB87659/110-2 100.0% 51.0% PPISLVLDLDETLVHS--------------TLEPCGEVDFTFP------------------VNFNE--EEHMVYVRCRPH 12 YA22_SCHP/156- 100.0% 66.7% GKKCLILDLDETLVHS--------------SFKYIEPADFVVS------------------IEIDG--LQHDVRVVKRPG 13 AAF29093/286-4 100.0% 47.6% PEFSLVLDLDETLVHC--------------SLNELEDAALTFP------------------VLFQD--VIYQVYVRLRPF 14 O02204/69-250 100.0% 60.4% NKKCLVIDLDETLVHS--------------SFKPVKNPDFVIP------------------VEIDG--VEHQVYVLKRPY 15 Q07949/226-369 99.3% 60.0% QKKCLILDLDETLVHS--------------SFKYMHSADFVLP------------------VEIDD--QVHNVYVIKRPG 16 BAB10744/87-23 92.4% 19.0% KKLHLVLDLDHTLLHTVMISNLTKEETYLIEEEDS--REDLRR---------------------LNGGYSSEFLIKLRPF 17 BAB02044/84-23 90.3% 20.1% KKLNLVLDLDHTLLHSIRVSLLSETEKCLIEEACSTTREDLWKLDS-------------------------DYLTKLRPF 18 Q9SI33/65-219 92.4% 16.9% KKLHLVLDLDHTLLHSKLVSNLSQAERYLIQEASSRTREDLWKFRPIG--------------------HPIDRLIKLRPF 19 Q07800/256-399 100.0% 60.4% GKKCLILDLDETLVHS--------------SFKYLRSADFVLS------------------VEIDD--QVHNVYVIKRPG 20 BAB02544/90-24 90.3% 17.8% KKLHLVLDLDHTLLHTVMVPSLSQAEKYLIEEAGSATRDDLWKIKAVGDPM--------------------EFLTKLRPF 21 BAB09212/96-24 100.0% 46.6% TKKTIVLDLDETLVHS-------------SMEKPEVPYDFVVN------------------PKIDG--QILTFFVIKRPG 22 AAF88157/75-22 91.0% 19.3% RKLHLVLDLDHTLLHSIMISRLSEGEKYLLGESDF--REDLWT-------------------------LDREMLIKLRPF 23 AAF34842/75-22 89.6% 20.7% KKLHLVLDLDHTLIHSMKTSNLSKAEKYLIKEEKSGSRKDLRKYNN--------------------------RLVKFRPF 24 AAF60646/63-20 100.0% 48.3% PEYTLVLDLDETLVHC--------------SLTPLDNATMVFP------------------VVFQN--ITYQVYVRLRPH 25 AAF79202/55-21 94.4% 16.6% RKLSLVVDLDQTIIHAAVDPTIGEWMADKDNPNHAPVSDVRAFQLVDD----------------GPGMRGLLVLCKLRPG 26 CAC00553/163-3 93.8% 17.2% KRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEG-----------------PSGYTSCYYIKFRPG 27 AAG10617/101-2 100.0% 42.2% KKRTIFLDLDETLVHS------------TMEPPIRVNVDFMVR------------------IKIEG--AVIPMFVVKRPG 28 BAB08870/746-9 92.4% 18.2% RKLYLVLDLDHTLLNTTILRDLKPEEEYLKSHTHS--LQDGCNVSGGSLFLL----------------EFMQMMTKLRPF 29 AAG10616/74-21 99.3% 43.5% MKRTIILDLDETLVHA------------TTHLPG-VKHDFMVM------------------VKMER--EIMPIFVVKRPG 30 O59718/302-448 97.2% 38.4% PRKTLVLDLDETLIHS----------VSRG---SRTTSGQPIE------------------VHVPG-EHPILYYIHKRPH 31 BAB09563/85-23 88.9% 16.1% KKLHLVLDLDQTLIHTIKTSLLYESEKYIIEEVES--RKDIKRFNTGFPE---------------------ESLIKLRPF 32 YM8K_YEAS/173- 96.5% 16.5% KKLILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLMYMNDDGSMLRPPPVRKCWYYVKVRPG 33 YHG4_YEAS/250- 100.0% 37.4% KKKKLVIDLDETLIHS----------ASRSTTHSNSSQGHLVE------------------VKFGLSGIRTLYFIHKRPY 34 Q9ZVR2/85-236 88.9% 14.9% KKLHLVLDLDHTLVHTIKVSQLSESEKYITEEVES--RKDLRRFNTGFPE---------------------ESLIKLRSF 35 Q9Y5B0/181-327 91.7% 21.4% RKLVLMVDLDQTLIHT-----------TEQHCQQMSNKGIFHFQLGRGEPM---------------------LHTRLRPH 36 Q9PT70/62-208 91.7% 21.4% QKLVLMVDLDQTLIHT-----------TEQHCQHMSRKGIFHFQLGRGEPM---------------------LHTRLRPH 37 Q9W147/206-352 95.8% 20.3% RKLVLLVDLDQTVIHT-----------TNDTVPDN-IKGIYHF--------------------QLYGPHSPWYHTRLRPG 38 Q9VZS0/52-203 99.3% 28.8% ARKTLVLDMDNTMITS---------WFIKRGKKPKNIPRIAHD------------------FKFYLPAYGATIYVYKRPY 39 CAB87850/96-25 100.0% 31.7% QRLKVVLDLDETLVCA----------YETSSLPAALRNQAIEAGLKWFELECLSTD-----KEYDGKPKINYVTVFERPG 40 O22804/903-106 93.8% 17.9% QKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHM--------------------GMWTKLRPG 41 O62235/1341-15 97.9% 15.4% RKLVLLVDLDQTIIHTSDKPMT---VDTENKINKDFKKNFSSSFYVNDKHK----------DITKYNLHSRVYTTKLRPH 42 Q02776/190-319 88.9% 37.0% RPLTLVITLEDFLVHS-----------------EWSQK--------------------------------HGWRTAKRPG 43 O13636/175-304 89.6% 31.0% RPYTLVLSLDDLLIHS-----------------EWTRQ--------------------------------HGWRTAKRPG 44 AAF79316/189-3 88.9% 24.7% HVFTLVLDLNETLLYT-----------------DWKRE--------------------------------RGWRTFKRPG 45 Q9V9P3/138-266 88.9% 27.6% PPYSLVLEIKDVLVHP-----------------DWTYQ--------------------------------TGWRFKKRPG 46 Q9W0S3/208-336 88.9% 29.0% PPYTLVLEIKDVLVHP-----------------DWTYE--------------------------------TGWRFKKRPG 47 AAF39737/309-6 93.8% 11.9% RQKVLVIDLDETLCHV---STTTANMAGPPTFSEVIPTASGAE----------------------------LFHVWERPY 48 Q22647/246-375 88.9% 33.6% PKYTIVIELKNILVHP-----------------EWTYK--------------------------------TGYRFLKRPA 49 O76907/227-342 79.9% 23.4% PRYTLVLEMKDVLVHP-----------------DWTYQ--------------------------------TGWRFKKRPG 50 O94336/22-179 88.9% 15.5% NRKLVILDLNGTLLCR------ALAVRSEKSVYEASRN--PIP----------------------------------RPG 51 Q9SJQ4/47-196 88.2% 16.2% KKKLLVLSLSGLLLHR-------VHKKELRKKPKNRSPDASCG----------------------------PNLVYKRPF 52 Q9XZ16/139-280 81.2% 18.3% GKKLLVLDIDYTL-------------FDHRSPAETGTE-------------------------------------LMRPY consensus/100% ..h.lhlphp.hh................................................................Rsh consensus/90% ..h.lll-lcpsllps........................................................hhhhhRPh consensus/80% t+hhLllDLDpTLlHs..............t......tt.................................hhhhhRPh consensus/70% t+hpLVlDLDcTLlHo..............p....t.tt.hh..............................hhshhRPh cov pid 81 . 1 . . . . : . 160 1 Q9PTJ8/93-236 100.0% 100.0% VDEFLQRMG-ELFECVLFTASLAKYAD--------------------PVA----DLL--D-RW-GVFRARLFRESCVFHR 2 O15194/169-312 100.0% 99.3% VDEFLQRMG-QLFECVLFTASLAKYAD--------------------PVA----DLL--D-RW-GVFRARLFRESCVFHR 3 O95476/60-212 99.3% 42.9% VDFFLEVVS-QWYELVVFTASMEIYGS--------------------AVA----DKL--DNSR-SILKRRYYRQHCTLEL 4 10257407/89-23 100.0% 86.8% VDEFLQRMG-ELFECVLFTASLAKYAD--------------------PVA----DLL--D-KW-GAFRARLFRESCVFHR 5 Q9VRG7/59-211 99.3% 42.2% VDYFLDVVS-QWYDLVVFTASMEIYGA--------------------AVA----DKL--DNGR-NILRRRYYRQHCTPDY 6 Q9XYL0/135-278 100.0% 71.5% VDDFLRAIA-EKFEIVVFTASLAKYAD--------------------PVL----DFL--D-TG-RVIHYRLFRESCHNHK 7 O14595/100-243 100.0% 87.5% VDEFLRRMG-ELFECVLFTASLAKYAD--------------------PVT----DLL--D-RC-GVFRARLFRESCVFHQ 8 Q20432/56-208 99.3% 42.9% VDYFLSVVS-QWYELVVFTASMEVYGT--------------------SVA----DRL--DRGR-GILKRRYFRQHCTMEV 9 Q9V4W8/9-168 99.3% 36.6% VDEFLDFVS-KWYDLVIYTASLEVYAA--------------------QVV----DHL--DAGR-GLITRRFYRQHCRASS 10 BAB02545/87-24 92.4% 17.6% LCEFLKEAN-EMFTMYVYTKGTRPYAE--------------------AIL----KLI--DPKKLYFGHRVITRNESPHTK 11 CAB87659/110-2 100.0% 51.0% LKEFMERVS-RLFEIIIFTASQSIYAE--------------------QLL----NVL--DPKR-KLFRHRVYRDSCVFFD 12 YA22_SCHP/156- 100.0% 66.7% VDEFLKKMG-DMFEIVVFTASLAKYAD--------------------PVL----DML--D-HS-HVIRHRLFREACCNYE 13 AAF29093/286-4 100.0% 47.6% FREFLERMS-QMYEIILFTASKKVYAD--------------------KLL----NIL--DPKK-QLVRHRLFREHCVCVQ 14 O02204/69-250 100.0% 60.4% VDEFLAKVG-EHFECILFTASLAKYAD--------------------PVA----DLL--D-KK-RVFRGRLFREACVFHK 15 Q07949/226-369 99.3% 60.0% VDEFLNRVS-QLYEVVVFTASVSRYAN--------------------PLL----DTL--DP-N-GTIHHRLFREACYNYE 16 BAB10744/87-23 92.4% 19.0% VHEFLKEAN-KMFSMYVYTMGDRDYAM--------------------NVL----NLI--DPEKVYFGDRVITRNESPYIK 17 BAB02044/84-23 90.3% 20.1% VHEFLKEAN-ELFTMYVYTMGTRVYAE--------------------SLL----KLI--DPKRIYFGDRVITRDESPYVK 18 Q9SI33/65-219 92.4% 16.9% VRDFLKEAN-EMFTMFVYTMGSRIYAK--------------------AIL----EMI--DPKKLYFGNRVITKDESPRMK 19 Q07800/256-399 100.0% 60.4% VEEFLERVG-KLFEVVVFTASVSRYGD--------------------PLL----DIL--D-TD-KVIHHRLFREACYNYE 20 BAB02544/90-24 90.3% 17.8% LRDFLKEAN-EFFTMYVYTKGSRVYAK--------------------QVL----ELI--DPKKLYFGDRVITKTESPHMK 21 BAB09212/96-24 100.0% 46.6% VDEFLKKIG-EKYQIVVFTAGLREYAS--------------------LVL----DKL--DPER-RVISRSFYRDACSEID 22 AAF88157/75-22 91.0% 19.3% VHEFLKEAN-EIFSMYVYTMGNRDYAQ--------------------AVL----KWI--DPKKVYFGDRVITRDESGFSK 23 AAF34842/75-22 89.6% 20.7% VEEFLKEAN-KLFTMTAYTKGGSTYGQ--------------------AVV----RMI--DPNKIYFGDRIITRKESPDLK 24 AAF60646/63-20 100.0% 48.3% LRTFLSRMA-KTFEIIIFTASKKVYAN--------------------KLC----DIL--DPRK-NHIRHRLFREHCVCVF 25 AAF79202/55-21 94.4% 16.6% LEEFLKNVA-DMYELHIYTMGTRSYAQ--------------------AIA----NII--DPDRKLFGDRILSRDESGSLS 26 CAC00553/163-3 93.8% 17.2% LAQFLQKIS-ELYELHIYTMGTKAYAK--------------------EVA----KII--DPTGKLFQDRVLSRDDSGSLA 27 AAG10617/101-2 100.0% 42.2% VTEFLERIS-KNYRVAIFTAGLPEYAS--------------------QVL----DKL--D-KN-RVISQRLYRDSCTEVN 28 BAB08870/746-9 92.4% 18.2% VHSFLKEAS-EMFVMYIYTMGDRNYAR--------------------QMA----KLL--DPKGEYFGDRVISRDDGTVRH 29 AAG10616/74-21 99.3% 43.5% VTEFLERLG-ENYKVVVFTAGLEEYAS--------------------QVL----DKL--D-KN-GVISQRLYRDSCTEVN 30 O59718/302-448 97.2% 38.4% LDYFLSNVS-QWFRLILFTASVQPYAD--------------------PII----DYL--ERDK-KIFAKRYYRQHCALVD 31 BAB09563/85-23 88.9% 16.1% VHQFLKECN-EMFSMYVYTKGGYDYAR--------------------LVL----EMI--DPDKFYFGNRVITRRESPGFK 32 YM8K_YEAS/173- 96.5% 16.5% LKEFFAKVA-PLFEMHIYTMATRAYAL--------------------QIA----KIV--DPTGELFGDRILSRDENGSLT 33 YHG4_YEAS/250- 100.0% 37.4% CDLFLTKVS-KWYDLIIFTASMKEYAD--------------------PVI----DWL--ESSFPSSFSKRYYRSDCVLRD 34 Q9ZVR2/85-236 88.9% 14.9% VHQFLKECN-EMFSLYVYTKGGYDYAQ--------------------LVL----EMI--DPDKIYFGNRVITRRESPGFK 35 Q9Y5B0/181-327 91.7% 21.4% CKDFLEKIA-KLYELHVFTFGSRLYAH--------------------TIA----GFL--DPEKKLFSHRILSRDECIDPF 36 Q9PT70/62-208 91.7% 21.4% CKEFLEKIA-KLYELHVFTFGSRLYAH--------------------TIA----GFL--DPEKKLFSHRILSRDECIDPY 37 Q9W147/206-352 95.8% 20.3% TAEFLERMS-QLYELHICTFGARNYAH--------------------MIA----QLL--DPEGKFFSHRILSRDECFNAT 38 Q9VZS0/52-203 99.3% 28.8% LDHFLDRVS-KWYDLTVFTSGAEIYAS--------------------PIL----DFL--DRGR-GILNSRLYRQHCIEQF 39 CAB87850/96-25 100.0% 31.7% LHEFLEQLS-EFADLILFTAGLEGYAR--------------------PLV----DRI--D-TR-KVLTNRLYRPSTVSTQ 40 O22804/903-106 93.8% 17.9% IWNFLEKAS-KLYELHLYTMGNKLYAT--------------------EMA----KLL--DPKGVLFNGRVISKGDDGDPL 41 O62235/1341-15 97.9% 15.4% TTEFLNKMS-NMYEMHIVTYGQRQYAH--------------------RIA----QIL--DPDARLFEQRILSRDELFSAQ 42 Q02776/190-319 88.9% 37.0% ADYFLGYLS-QYYEIVLFSSNYMMYSD--------------------KIA----EKL--DPIHAFVSYN-LFKEHCVYKD 43 O13636/175-304 89.6% 31.0% LDYFLGYLS-MYYEVVIFTRQYLATAK--------------------PII----DKI--DPYH-VSISAVLTRESSKYEK 44 AAF79316/189-3 88.9% 24.7% VDAFLEHLG-KFYEIVVYSDQMEMVKSQL---------------YVLPVC----EKL--DPNG-YIRYK-LARGATKYEN 45 Q9V9P3/138-266 88.9% 27.6% VDYFLQQCS-RNFEIVIYTSEQGMTAF--------------------PLL----DAL--DPYG-YIKYR-LVRGATDLVE 46 Q9W0S3/208-336 88.9% 29.0% VDVFLKECA-KYFEIVVYTAEQGVTVF--------------------PLV----DAL--DPNG-CIMYR-LVRDSTHFDG 47 AAF39737/309-6 93.8% 11.9% ARLFLSTAA-KLFNLVLFTSASKPYAD--------------------TIL----QRI--DPDR-LLKYR-YYRQDCRLVP 48 Q22647/246-375 88.9% 33.6% LDYFLDVIGYPNFEVVIYSSESMMTAA--------------------PVV----DSF--DPKQ-RIMYK-LFRDCTKYMN 49 O76907/227-342 79.9% 23.4% VDHFLAECA-KDFEIVVFTAEQGMTVF--------------------PIL----DAL--DPNG-YIMYR-LVRDATHFVG 50 O94336/22-179 88.9% 15.5% LHNFLKYIF-ANFSVMVFSSSKPHNVQ--------------------AML----SAIMNE-EQKKALIACWTRVDMKLTK 51 Q9SJQ4/47-196 88.2% 16.2% AEEFMKFCL-ERFEVGIWSSACELVSSL-----------------NILIVTGPRECT--DSGYKTLENR---------YK 52 Q9XZ16/139-280 81.2% 18.3% LHEFLTSAY-EDYDIVIWSATSMRWIEEKMRLLG------VASNDNYKVM----FYL--DSTA-MISVH-------VPER consensus/100% h..Fht.h....h.hhhho.t...........................hh......h..-.................... consensus/90% hp.FLp.hs.p.aphhlao.t...hut.....................lh....phl..D.tt.hh..t.h.+tts.... consensus/80% lc.FLpphs.phaphhlaThu.t.Yup.....................lh....phl..D.pt.hhhtphh.Rpps...t consensus/70% lcpFLpphu.chachhlaTtu.thYAp.....................lh....chl..Dspt.hhhp+hlhRppsh.hp cov pid 161 . . . 2 . . . . 240 1 Q9PTJ8/93-236 100.0% 100.0% GN-YVKD------------------------------------------------------------------------- 2 O15194/169-312 100.0% 99.3% GN-YVKD------------------------------------------------------------------------- 3 O95476/60-212 99.3% 42.9% GS-YIKD------------------------------------------------------------------------- 4 10257407/89-23 100.0% 86.8% GN-YVKD------------------------------------------------------------------------- 5 Q9VRG7/59-211 99.3% 42.2% GS-YTKD------------------------------------------------------------------------- 6 Q9XYL0/135-278 100.0% 71.5% GN-YVKD------------------------------------------------------------------------- 7 O14595/100-243 100.0% 87.5% GC-YVKD------------------------------------------------------------------------- 8 Q20432/56-208 99.3% 42.9% GG-YTKD------------------------------------------------------------------------- 9 Q9V4W8/9-168 99.3% 36.6% PM-VSKD------------------------------------------------------------------------- 10 BAB02545/87-24 92.4% 17.6% -------------------------------------------------------------------------------- 11 CAB87659/110-2 100.0% 51.0% GN-YLKD------------------------------------------------------------------------- 12 YA22_SCHP/156- 100.0% 66.7% GN-FVKD------------------------------------------------------------------------- 13 AAF29093/286-4 100.0% 47.6% GN-YIKD------------------------------------------------------------------------- 14 O02204/69-250 100.0% 60.4% GN-YRKSNISDSFIFFSEIFGEIDY------------------------------------------------------- 15 Q07949/226-369 99.3% 60.0% GN-YIKN------------------------------------------------------------------------- 16 BAB10744/87-23 92.4% 19.0% -------------------------------------------------------------------------------- 17 BAB02044/84-23 90.3% 20.1% -------------------------------------------------------------------------------- 18 Q9SI33/65-219 92.4% 16.9% -------------------------------------------------------------------------------- 19 Q07800/256-399 100.0% 60.4% GN-YIKN------------------------------------------------------------------------- 20 BAB02544/90-24 90.3% 17.8% -------------------------------------------------------------------------------- 21 BAB09212/96-24 100.0% 46.6% GR-LVKD------------------------------------------------------------------------- 22 AAF88157/75-22 91.0% 19.3% -------------------------------------------------------------------------------- 23 AAF34842/75-22 89.6% 20.7% -------------------------------------------------------------------------------- 24 AAF60646/63-20 100.0% 48.3% GN-YVKD------------------------------------------------------------------------- 25 AAF79202/55-21 94.4% 16.6% VKN----------------------------------------------------------------------------- 26 CAC00553/163-3 93.8% 17.2% QKS----------------------------------------------------------------------------- 27 AAG10617/101-2 100.0% 42.2% GR-YAKD------------------------------------------------------------------------- 28 BAB08870/746-9 92.4% 18.2% EK------------------------------------------------------------------------------ 29 AAG10616/74-21 99.3% 43.5% GK-YVKD------------------------------------------------------------------------- 30 O59718/302-448 97.2% 38.4% SS-FVKD------------------------------------------------------------------------- 31 BAB09563/85-23 88.9% 16.1% -------------------------------------------------------------------------------- 32 YM8K_YEAS/173- 96.5% 16.5% TKS----------------------------------------------------------------------------- 33 YHG4_YEAS/250- 100.0% 37.4% GVGYIKD------------------------------------------------------------------------- 34 Q9ZVR2/85-236 88.9% 14.9% -------------------------------------------------------------------------------- 35 Q9Y5B0/181-327 91.7% 21.4% SKTGN--------------------------------------------------------------------------- 36 Q9PT70/62-208 91.7% 21.4% SKTGN--------------------------------------------------------------------------- 37 Q9W147/206-352 95.8% 20.3% SKTDN--------------------------------------------------------------------------- 38 Q9VZS0/52-203 99.3% 28.8% GK-WSKS------------------------------------------------------------------------- 39 CAB87850/96-25 100.0% 31.7% YRDHVKD------------------------------------------------------------------------- 40 O22804/903-106 93.8% 17.9% DGDERVPK------------------------------------------------------------------------ 41 O62235/1341-15 97.9% 15.4% HKTNN--------------------------------------------------------------------------- 42 Q02776/190-319 88.9% 37.0% GV-HIKD------------------------------------------------------------------------- 43 O13636/175-304 89.6% 31.0% GK-VIKD------------------------------------------------------------------------- 44 AAF79316/189-3 88.9% 24.7% GK-HYRD------------------------------------------------------------------------- 45 Q9V9P3/138-266 88.9% 27.6% GQ-HTKN------------------------------------------------------------------------- 46 Q9W0S3/208-336 88.9% 29.0% GH-HVKN------------------------------------------------------------------------- 47 AAF39737/309-6 93.8% 11.9% RG-LLRKMCAAAGMRGLPLGSGGAEGRSSVACGSSDCDRSGGGGSGSVAGGGVYGSSSSARPLGRLSSAASIGGRHSGST 48 Q22647/246-375 88.9% 33.6% GH-HVKD------------------------------------------------------------------------- 49 O76907/227-342 79.9% 23.4% GH------------------------------------------------------------------------------ 50 O94336/22-179 88.9% 15.5% HQ-FDRKVQTYKNLDT---------------------------------------------------------------- 51 Q9SJQ4/47-196 88.2% 16.2% PL-FFKD------------------------------------------------------------------------- 52 Q9XZ16/139-280 81.2% 18.3% GVVDVKP------------------------------------------------------------------------- consensus/100% ................................................................................ consensus/90% ................................................................................ consensus/80% ................................................................................ consensus/70% st.............................................................................. cov pid 241 : . . . . 3 . . 320 1 Q9PTJ8/93-236 100.0% 100.0% -------------------------------------------------------------------------------- 2 O15194/169-312 100.0% 99.3% -------------------------------------------------------------------------------- 3 O95476/60-212 99.3% 42.9% -------------------------------------------------------------------------------- 4 10257407/89-23 100.0% 86.8% -------------------------------------------------------------------------------- 5 Q9VRG7/59-211 99.3% 42.2% -------------------------------------------------------------------------------- 6 Q9XYL0/135-278 100.0% 71.5% -------------------------------------------------------------------------------- 7 O14595/100-243 100.0% 87.5% -------------------------------------------------------------------------------- 8 Q20432/56-208 99.3% 42.9% -------------------------------------------------------------------------------- 9 Q9V4W8/9-168 99.3% 36.6% -------------------------------------------------------------------------------- 10 BAB02545/87-24 92.4% 17.6% -------------------------------------------------------------------------------- 11 CAB87659/110-2 100.0% 51.0% -------------------------------------------------------------------------------- 12 YA22_SCHP/156- 100.0% 66.7% -------------------------------------------------------------------------------- 13 AAF29093/286-4 100.0% 47.6% -------------------------------------------------------------------------------- 14 O02204/69-250 100.0% 60.4% ---------------------------------------------------------------RKMKNLHFSSYFPEKIE 15 Q07949/226-369 99.3% 60.0% -------------------------------------------------------------------------------- 16 BAB10744/87-23 92.4% 19.0% -------------------------------------------------------------------------------- 17 BAB02044/84-23 90.3% 20.1% -------------------------------------------------------------------------------- 18 Q9SI33/65-219 92.4% 16.9% -------------------------------------------------------------------------------- 19 Q07800/256-399 100.0% 60.4% -------------------------------------------------------------------------------- 20 BAB02544/90-24 90.3% 17.8% -------------------------------------------------------------------------------- 21 BAB09212/96-24 100.0% 46.6% -------------------------------------------------------------------------------- 22 AAF88157/75-22 91.0% 19.3% -------------------------------------------------------------------------------- 23 AAF34842/75-22 89.6% 20.7% -------------------------------------------------------------------------------- 24 AAF60646/63-20 100.0% 48.3% -------------------------------------------------------------------------------- 25 AAF79202/55-21 94.4% 16.6% -------------------------------------------------------------------------------- 26 CAC00553/163-3 93.8% 17.2% -------------------------------------------------------------------------------- 27 AAG10617/101-2 100.0% 42.2% -------------------------------------------------------------------------------- 28 BAB08870/746-9 92.4% 18.2% -------------------------------------------------------------------------------- 29 AAG10616/74-21 99.3% 43.5% -------------------------------------------------------------------------------- 30 O59718/302-448 97.2% 38.4% -------------------------------------------------------------------------------- 31 BAB09563/85-23 88.9% 16.1% -------------------------------------------------------------------------------- 32 YM8K_YEAS/173- 96.5% 16.5% -------------------------------------------------------------------------------- 33 YHG4_YEAS/250- 100.0% 37.4% -------------------------------------------------------------------------------- 34 Q9ZVR2/85-236 88.9% 14.9% -------------------------------------------------------------------------------- 35 Q9Y5B0/181-327 91.7% 21.4% -------------------------------------------------------------------------------- 36 Q9PT70/62-208 91.7% 21.4% -------------------------------------------------------------------------------- 37 Q9W147/206-352 95.8% 20.3% -------------------------------------------------------------------------------- 38 Q9VZS0/52-203 99.3% 28.8% -------------------------------------------------------------------------------- 39 CAB87850/96-25 100.0% 31.7% -------------------------------------------------------------------------------- 40 O22804/903-106 93.8% 17.9% -------------------------------------------------------------------------------- 41 O62235/1341-15 97.9% 15.4% -------------------------------------------------------------------------------- 42 Q02776/190-319 88.9% 37.0% -------------------------------------------------------------------------------- 43 O13636/175-304 89.6% 31.0% -------------------------------------------------------------------------------- 44 AAF79316/189-3 88.9% 24.7% -------------------------------------------------------------------------------- 45 Q9V9P3/138-266 88.9% 27.6% -------------------------------------------------------------------------------- 46 Q9W0S3/208-336 88.9% 29.0% -------------------------------------------------------------------------------- 47 AAF39737/309-6 93.8% 11.9% TNTDDDVNGSGRGGKGSTRAWGNTLSSEAKVSLLGSGGSAAGDHAMTASVLAGTAADRGGVDTGLPAVEKAAMNEHAKVL 48 Q22647/246-375 88.9% 33.6% -------------------------------------------------------------------------------- 49 O76907/227-342 79.9% 23.4% -------------------------------------------------------------------------------- 50 O94336/22-179 88.9% 15.5% -------------------------------------------------------------------------VWEKIHH 51 Q9SJQ4/47-196 88.2% 16.2% -------------------------------------------------------------------------------- 52 Q9XZ16/139-280 81.2% 18.3% -------------------------------------------------------------------------------- consensus/100% ................................................................................ consensus/90% ................................................................................ consensus/80% ................................................................................ consensus/70% ................................................................................ cov pid 321 . . : . . ] 376 1 Q9PTJ8/93-236 100.0% 100.0% ---LSRLGR----------ELSKVIIVDNSPASYIFHPEN--AVPVQSWFDDMTDT 2 O15194/169-312 100.0% 99.3% ---LSRLGR----------ELSKVIIVDNSPASYIFHPEN--AVPVQSWFDDMTDT 3 O95476/60-212 99.3% 42.9% ---LSVVH----------SDLSSIVILDNSPGAYRSHPDN--AIPIKSWFSDPSDT 4 10257407/89-23 100.0% 86.8% ---LSRLGR----------DLRRVLILDNSPASYVFHPDN--AVPVASWFDNMSDT 5 Q9VRG7/59-211 99.3% 42.2% ---LSAIC----------SDLNRIFIIDNSPGAYRCFPNN--AIPIKSWFSDPMDT 6 Q9XYL0/135-278 100.0% 71.5% ---LSRLGR----------DLKSTIIVDNSPSSYLFHPEN--AIPIDSWFDDKDDR 7 O14595/100-243 100.0% 87.5% ---LSRLGR----------DLRKTLILDNSPASYIFHPEN--AVPVQSWFDDMADT 8 Q20432/56-208 99.3% 42.9% ---LSAIH----------PDLSSICILDNSPGAYRKFPHN--AIPIPSWFSDPNDT 9 Q9V4W8/9-168 99.3% 36.6% ---LTLVT----------PDMSGVLIIDNSPYAYRDFPDN--AIPIKTFIYDPDDT 10 BAB02545/87-24 92.4% 17.6% --TLDMVLA----------DERGVVIVDDTRKAWPNNKSN--LVLIGRYNYFRSQS 11 CAB87659/110-2 100.0% 51.0% ---LSVLGR----------DLSRVIIVDNSPQAFGFQVEN--GVPIESWFNDPSDK 12 YA22_SCHP/156- 100.0% 66.7% ---LSQLGR----------NLEDSIIIDNSPSSYIFHPSH--AVPISSWFNDMHDM 13 AAF29093/286-4 100.0% 47.6% ---LNILGR----------DLSKTIIIDNSPQAFAYQLSN--GIPIESWFMDKNDN 14 O02204/69-250 100.0% 60.4% KYYLSRLGR----------NLNQTLIIDNSPASYAFHPEN--AVPVTTWFDDPSDT 15 Q07949/226-369 99.3% 60.0% ---LSQIGR----------PLSETIILDNSPASYIFHPQH--AVPISSWFSDTHDN 16 BAB10744/87-23 92.4% 19.0% --TLDLVLA----------DECGVVIVDDTPHVWPDHKRN--LLEITKYNYFSDKT 17 BAB02044/84-23 90.3% 20.1% --TLDLVLA----------EERGVVIVDDTSDVWTHHKSN--LVEINEYHFFRVNG 18 Q9SI33/65-219 92.4% 16.9% --TLNLVLA----------EERGVVIVDDTRDIWPHHKNN--LIQIRKYKYFRRSG 19 Q07800/256-399 100.0% 60.4% ---LSQIGR----------PLSDIIILDNSPASYIFHPQH--AIPISSWFSDTHDN 20 BAB02544/90-24 90.3% 17.8% --TLDFVLA----------EERGVVIVDDTRNVWPDHKSN--LVDISKYSYFRLKG 21 BAB09212/96-24 100.0% 46.6% ---LGFVMR----------DLRRVVIVDDNPNSYALQPEN--AFPIKPFSDDLEDV 22 AAF88157/75-22 91.0% 19.3% --TLDLVLA----------DECGVVIVDDTRHVWPDHERN--LLQITKYSYFRDYS 23 AAF34842/75-22 89.6% 20.7% --TLDLVLA----------DERGIVIVDNTPNVWPHHKRN--LLEITSYFYFKNDG 24 AAF60646/63-20 100.0% 48.3% ---LTILGR----------DPSKTMILDNAVQSFAYQLDN--GIPIESWFHDRNDT 25 AAF79202/55-21 94.4% 16.6% --LHRIFPV----------DTKMVVIIDDRGDVWRWSP-N--LIKVIPYDFFVGIG 26 CAC00553/163-3 93.8% 17.2% --LRRLFPC----------DTSMVVVIDDRGDVWDWNP-N--LIKVVPYEFFVGIG 27 AAG10617/101-2 100.0% 42.2% ---LSLVAK---------NDLGSVLLVDDNPFSYSLQPDN--GVPIKPFMDDMEDQ 28 BAB08870/746-9 92.4% 18.2% --SLDVVLG----------QESAVLILDDTENAWPKHKDN--LIVIERYHFFSSSC 29 AAG10616/74-21 99.3% 43.5% --LSLVVGK----------DLRSALIVDDNPSSYSLQPEN--GVPIKAFVDDLKDQ 30 O59718/302-448 97.2% 38.4% ---ISICN----------IHLSRIMIIDNSPASYNAHKEN--AIPIEGWISDPSDV 31 BAB09563/85-23 88.9% 16.1% --TLDLVLA----------DERGIVIVDDTSSVWPHDKKN--LLQIARYKYFGDKS 32 YM8K_YEAS/173- 96.5% 16.5% --LAKLFPT----------DQSMVVVIDDRGDVWNWCP-N--LIKVVPYNFFVGVG 33 YHG4_YEAS/250- 100.0% 37.4% ---LSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDN--AIQVEGWISDPTDT 34 Q9ZVR2/85-236 88.9% 14.9% --TLDLVLA----------DERGIVVVDDKSSVWPHDKKN--LLQIARYKYFGDQS 35 Q9Y5B0/181-327 91.7% 21.4% --LRNLFPC----------GDSMVCIIDDRKDVWKFAP-N--LITVKKYVYFQGTG 36 Q9PT70/62-208 91.7% 21.4% --LRNLFPC----------GDSMVCIIDDREDVWKFAP-N--LITVKKMCIFQGTG 37 Q9W147/206-352 95.8% 20.3% --LKALFPN----------GDSMVCIIDDREDVWNMAS-N--LIQVKPYHFFQHTG 38 Q9VZS0/52-203 99.3% 28.8% ---VLLAC----------PDLSNVVLLDNSSTECSFNAEN--AILIKSYEIGCRDE 39 CAB87850/96-25 100.0% 31.7% ---LLSTSK----------NMCRTVIVDNNPFSFLLQPSN--GIPCIAFSAGQPND 40 O22804/903-106 93.8% 17.9% SKDLEGVMG----------MESSVVIIDDSVRVWPQHKMN--LIAVERYHL-SHYG 41 O62235/1341-15 97.9% 15.4% --LKALFPC----------GDNLVVIIDDRSDVWMYSE-A--LIQIKPYRFFKEVG 42 Q02776/190-319 88.9% 37.0% ---LSKLNR----------DLSKVIIIDTDPNSYKLQPEN--AIPMEPWNGEADDK 43 O13636/175-304 89.6% 31.0% ---LSYLNR----------DLSRVIMIDTNPESWSKQPDN--AIAMAPWTGNPKDK 44 AAF79316/189-3 88.9% 24.7% ---LSKLNR----------DPKKILFVSANAFESTLQPEN--SVPIKPYKLEADDT 45 Q9V9P3/138-266 88.9% 27.6% ---LDYLNR----------DLSRVIVVDCDPYTTPLHPDN--SLVLTKWLGNDDDV 46 Q9W0S3/208-336 88.9% 29.0% ---LDNLNR----------DLKRVVVVDWDRNSTKFHPSN--SFSIPRWSGNDNDT 47 AAF39737/309-6 93.8% 11.9% VKDLRLLKV----------PPELLVMIDNSEECTLVNPEN--ALVIPPYIPALSKM 48 Q22647/246-375 88.9% 33.6% ---LSKLNR----------DLSKVIYIDFDAKSGQLNPEN--MLRVPEWKGNMDDT 49 O76907/227-342 79.9% 23.4% ----------------------HVIVVDWDANATKMHPDN--TFGLARWHGNDDDG 50 O94336/22-179 88.9% 15.5% DSTGKPVSW----------SQYNTIIVDDSKTKCAAHPYN--HIAVSDFVAKSHSN 51 Q9SJQ4/47-196 88.2% 16.2% --LSKVFKCF------KGFSASNTIFIDDEPYKALRNPDNTGLFPMSYDASNIKDN 52 Q9XZ16/139-280 81.2% 18.3% ---LGVIWALY-----KQYNSSNTIMFDDIRRNFLMNPKS--GLKIRPFRQAHLNR consensus/100% ........................hhhs...........t...h.h.......... consensus/90% ...ht.h............t.p.hhhlDsp..sh..t..N..hl.l..a....t.t consensus/80% ...hphh.t..........s.ptslllDss.tsa.hp.pN..hl.lt.a....tss consensus/70% ...Lshl.t..........s.ptllIlDssstsa.hpspN..hl.lptah...pss