cov pid 1 [ . . . . : . . . 80 1 243233.MCA0931_from_5_to_237 100.0% 100.0% LYMIEL--------RPDPAALIRFAQDQGLNTHQDQDLGYATHAWLKALCGELAPKPF--------RLLQDGRNLRPPRL 2 391165.GbCGDNIH1_1697_from_2_to_239 93.1% 22.8% LHLIHLPI--------EARSFARWARDRGFGPKGTQDNDAVLHHLLTQLFGRQMLQPF--------RVFTPEQANWSLYA 3 269796.Rru_A0346_from_4_to_241 88.8% 22.3% LYLISLPLDMVS--FHRWAGQRGIGTDEGRAL----------HHLLGESFGKGVLQP-----------FRLMVA------ 4 257309.DIP2212_from_5_to_227 87.6% 12.3% IHLVKLPVHIALSVPAKNKPRKGWELTDPSFR----------HRAVMALFPDTDSPLPRKSVD---ILFRFEQL------ 5 194439.CT1974_from_1_to_202 80.3% 14.1% MIATMLTL--------SRKDVKALRITDSYSL----------HRVIYSLFEDVRSEAEKRSSVPSGFLFADKGG------ 6 351605.Gura_0829_from_3_to_226 87.1% 15.4% WLA-RLEV------DAETVRAAGISE-DVYAW----------HKLLWECYPDQPEAERD-------FLTRIDQ------- 7 269800.Tfu_1588_from_2_to_225 88.8% 14.8% TWLTKIVP------DLRYRQTRADFR-TAGNL----------HRKLIRLSSDLGEERIANPRQQSGLLFRIEE------- 8 227882.SAV7538_from_3_to_217 85.8% 14.5% VWLTRIVP------DPRSRDARRDLGGNDSAM--------GLHRRLMSLYPCDAGPDPRARFG---VLFRIED------- 9 259564.Mbur_0598_from_5_to_222 86.7% 17.3% KLLPE---------AMSSKAIRGNMG-NEHNV----------HRLVWSLFPVNEDDKRK-------FIYRQDS------- 10 295319.SPA2795_from_1_to_232 85.4% 16.9% MYLSRIQLRFN---NLRPEMLAKWNSARPYAS----------HQWLWQLFPEQELRQ---------FLFREE-------- 11 290339.ESA_02833_from_1_to_212 85.0% 18.6% MYLSKITLPTA---RLTPERLMEMMARGEYVM----------HQWLWELFPGVAQRQ---------YLYRRET------- 12 99287.STM2939_from_1_to_212 85.0% 17.0% MYLSRITLHTS---ELSPAQLLHLVERGEYVM----------HQWLWDLFPGSKERQ---------FLYRREE------- 13 155864.Z4065_from_1_to_212 85.0% 16.6% MYLSRITLHTG---QLSPAQLLHLVDRGEYVM----------HQWLWDLFPGGKERQ---------FLYRREE------- 14 400668.Mmwyl1_3543_from_1_to_223 86.7% 13.4% MYLSKVSFQAS---QQARQLLLGFGGKGVYST----------HQMLWQLFTEEDERS---------FLFREEQS------ 15 243265.plu0750_from_1_to_223 86.7% 13.4% MYLSKIVLRQS---SQTANILAKLSANGVYTS----------HQLLWKLFSTDEKRQ---------FLFREEIG------ 16 290398.Csal_0231_from_1_to_229 89.3% 16.1% MYLSSVRVDLN---ALTREQLFDVLEGGAYTA----------HQLLWTLFADTSEGERP-------FLFRQEMEEAA--- 17 269796.Rru_A0170_from_2_to_217 83.3% 16.1% SHITRAELSRD---TGARKALTALLRDQGGTD--------GGHRLVWTLFADDPKASRD-------FVFREA-------- 18 391165.GbCGDNIH1_1376_from_3_to_226 89.7% 15.7% LYFSHLRLAR----NPSARALAVLLRPSESGGRASGERVSAQHHLLWSVFADSEERKRD-------FLWREE-------- 19 349163.Acry_1809_from_4_to_227 87.1% 18.9% MWLSKARLNHD---QKAVAALASVLVPEDGSA-----RVAATHHLVWSLFAGDADRKRD-------FLWREE-------- 20 323259.Mhun_1376_from_1_to_225 86.3% 11.3% MFFSKMTLDRE---AAISGRFRDLVT-GPYQV----------HEVIWDLFADHPDRKRD-------FLYRAEL------- 21 207559.Dde_0860_from_1_to_218 85.4% 14.7% MWMSKLVL------DPRRAVGK-----NLYDT----------HRLLWNLFADAPDRTRD-------FLFREQ-------- 22 355277.LBJ_2453_from_1_to_265 91.8% 14.4% MFLSQLKLDTH---NTNNKIVFNWIQ-NPYNI----------HQRLWMAFSEYSSKDKPQNSP---FLFQLDYN------ 23 321967.LSEI_0354_from_1_to_212 84.1% 17.3% MYLSRVQV------NTNDHQIFKHLT-HLGAY----------HDWVKRSFPREIAAGTRLR-----HLWRLDS------- 24 321956.LBUL_0798_from_1_to_205 82.8% 15.1% MYLSRVEI------DTDNRQKIKDLS-HLGAY----------HNWVERSFPAEIAEGERQR-----HLWRLDT------- 25 306537.jk0644_from_2_to_217 87.6% 14.3% TTFTRLHL------NPSSRQARKLLG-NPQAM----------HAAVLSCFPKEVSEKER-------ILWRHDG------- 26 106370.Francci3_0022_from_2_to_267 91.0% 14.3% TYLSRIWL------NPLRTGAQALLK-NPQRM----------HAAVLGGLSRQPVTER--------VLWRLETGEGLR-- 27 326424.FRAAL0457_from_28_to_266 88.0% 13.5% TYLSRVWL------NPLRTGAQSLLR-NPERM----------HAAVLGGLTRQPVTER--------VLWRLETG------ 28 247156.nfa44230_from_1_to_222 85.8% 13.3% MFLSRVPL------NPARQGTRKLLS-SPQAA----------HAAVLAAFPPQPSTPGTGR-----VLWRVDR------- 29 269800.Tfu_1596_from_1_to_205 76.8% 13.9% M-----------------------------------------HAAVMSSFPTLLPSDTDGPR----VLWRIDRT------ 30 338966.Ppro_2338_from_1_to_222 83.7% 12.7% MFLSRLRL------NLRCREARRDLS-NPYQL----------HSTLCRAFSPPETKCPKGE-----FLWRLEP------- 31 399739.Pmen_3756_from_1_to_203 82.0% 17.6% MYLTRLTL------DPRSAQARRDLA-DAYEM----------HRTLARAFVTDEHSAPAR------FLWRLEA------- 32 321327.CYA_0730_from_1_to_204 81.5% 16.2% MYLSRLIL------NERQLLVQRELS-NAHAL----------HQRIMHGFPDQPTKTPRSDWH---ILYRQE-------- 33 255470.cbdb_A1519_from_1_to_206 84.5% 14.0% MYLSLLRL------NPRSKRALTESS-RPYEL----------HRSLLKAFPDKADGGPGR------VLFRLD-------- 34 357808.RoseRS_0646_from_1_to_237 88.0% 12.8% MYLSRLIL------DVRQPRVRRDLS-DVYRL----------HRTILSAFPQAPDNVPARAHFG--ILYRIEP------- 35 292459.STH669_from_1_to_223 86.7% 15.0% MYLSLLRL------NPASAAVQRDLR-DVQAL----------HQRVMSAFPDVLDPEVEARAYFG-VLYRLE-------- 36 351160.RCIX1152_from_1_to_248 88.0% 15.2% MYLSRLIL------NPRTRAVRRDLA-DCHEL----------HRTILGGFPDLNGKGGEARETFG-VLHRID-------- 37 335543.Sfum_2829_from_1_to_201 82.8% 13.7% MYLSLLSL------DRLHRGTMRLLS-DIYLL----------HKGIMSGFTRCGDGLR--------VLFRVE-------- 38 357804.Ping_1587_from_1_to_178 72.1% 12.8% MYLSQVMLNTH----------------DIYEQ----------HQAIWSLFENVADRKRD-------HLFRVEVA------ 39 300267.SDY_2955_from_1_to_198 81.5% 15.8% MYLSKVII------------ARAWSR-DLYQL----------HQGLWHLFPNRPDAARD-------FLFHVE-------- 40 243231.GSU1389_from_1_to_201 82.8% 18.7% MYLSKVLI------NGTACR-------NPYEI----------HRVLWKLFPEDADAERD-------FLFRVE-------- consensus/100% ..........................................Ht.l......................ht.......... consensus/90% hhh..h..............h......t..............Hthlhthast...t..........hLa+.c........ consensus/80% halopl.l......t.t.t.hht..t.p..th..........HphlhphFsp..ttt.........hLaR.-........ consensus/70% haLo+l.l......s.pttthht.ht.sshth..........HphlhphFspt.ppt.........hLaR.-........ cov pid 81 . 1 . . . . : . 160 1 243233.MCA0931_from_5_to_237 100.0% 100.0% LGFSAHDGTRLTEHARAFASPLAAQ---------------VCSLADGIAFKP--MPES-WPNGRKLGFEVMACPI----- 2 391165.GbCGDNIH1_1697_from_2_to_239 93.1% 22.8% YANQDATTLVEQARFSITPDMT------------------EVISLERLRSKA--M-PD-AKPGQRIGFDVRIRPVRRSAK 3 269796.Rru_A0346_from_4_to_241 88.8% 22.3% -PNGATGTLYAYTRADRTALVQTTRD-------FGLPDALAVCDPARLAAKA--MPED-WREGRRLAFDLRARPVRRLLK 4 257309.DIP2212_from_5_to_227 87.6% 12.3% ----AGQPPFFLIQSTVAPKQ-------------------VDNLDSEVQHRT--VSLRRFSPKSAVRFRISINGI----- 5 194439.CT1974_from_1_to_202 80.3% 14.1% ----DAKGRKILILSDRPP---------------------LQPAHGELVSRP--VPEE-FLQHRFYKFEVTLNPT----- 6 351605.Gura_0829_from_3_to_226 87.1% 15.4% ----LEGAYRFWVLAKRKPVMPR-----------------WCPVDG-FGLNE--ISPS-FLSRQYYAFDLRANPV----- 7 269800.Tfu_1588_from_2_to_225 88.8% 14.8% ----TRNELYLLVQSHSPLRVDRLGP--------------GYHGVQMRNLDP--FLAR-LDKGSRVRYRIVASPT----- 8 227882.SAV7538_from_3_to_217 85.8% 14.5% ----TPAGAHILLQSAHEPDLTRLPD--------------GYGQAITRPLDP--LLDA-LKPGLTIRYRCTASPV----- 9 259564.Mbur_0598_from_5_to_222 86.7% 17.3% ----MGSLPSFYLVSENEPID-------------------ELNVWD-IDVKQ--YDPI-LKSGQKLAFSLRANPIVSKRD 10 295319.SPA2795_from_1_to_232 85.4% 16.9% ----AHGG--FFMLSAIPPLL-------------------QHSLFL-IETKP--FNPQ-LTNGLELDFQLRANPVITRNG 11 290339.ESA_02833_from_1_to_212 85.0% 18.6% ----LQNGFCFYLLSASAPER-------------------THPLFE-IQTRP--FAPA-PDEGTALRFSLRANPVVTRNG 12 99287.STM2939_from_1_to_212 85.0% 17.0% ----LQGAFRFFVLSQEQPA--------------------ASAIFD-VQTRP--FAPT-LSAGQTLRFNLRANPTVCKNG 13 155864.Z4065_from_1_to_212 85.0% 16.6% ----LQGAFRFFVLSQERPA--------------------ESETFT-IECRS--FVPE-LRTGQQLCFNLRANPTICKAG 14 400668.Mmwyl1_3543_from_1_to_223 86.7% 13.4% ----ADGSKAFFVLSSVKPES-------------------DESTFN-VKTKT--FMPK-LQSGQRLGFTLRANPTVCTTD 15 243265.plu0750_from_1_to_223 86.7% 13.4% ----IMGLPVFYVLSKTSPQT-------------------ESPLFE-VETKA--FYPQ-LKEGQRLAFKLRVNPTICITD 16 290398.Csal_0231_from_1_to_229 89.3% 16.1% -NGKSQGLPRFYVYSTRRPE--------------------AVAGLD-VQCKP--FAPQ-LAKGERLAFRLRANPTVAKSA 17 269796.Rru_A0170_from_2_to_217 83.3% 16.1% ----EPG--RYLIVSARPPGD-------------------GQGLWR-LETKP--YAPA-FREGQRFGFTLRANPATAVKQ 18 391165.GbCGDNIH1_1376_from_3_to_226 89.7% 15.7% ----RDGS--FLTLSARPPL--------------------QSDLFQPHRIKS--YAPD-LAPGARLEFLLRANATRMKRG 19 349163.Acry_1809_from_4_to_227 87.1% 18.9% ----RPG--HFLILSPDRPGD-------------------GGGLCT-VESKE--FAPA-LSAGDRLGFSLRANAVVSRGE 20 323259.Mhun_1376_from_1_to_225 86.3% 11.3% ----TGRDPVVYLLSARKPVY-------------------EGNVWN-ILSKP--FHPV-LQKDDLLNFRIRVNPVVTKTE 21 207559.Dde_0860_from_1_to_218 85.4% 14.7% -----DEPYTFLTVSRRQPED-------------------TTGWWS-IQIKP--YAPK-LQAGDAVAFSLRVNAVVKRNE 22 355277.LBJ_2453_from_1_to_265 91.8% 14.4% -SDPGKISPRILVFSEKLPNWERAFQEFKV----------LTEIPVGNQIKQ--ISPTFIQAGAVLRFSLTANPTKKLKD 23 321967.LSEI_0354_from_1_to_212 84.1% 17.3% ----LNGRDYLLVLSPDAPELAQLARYG------------VAGTAQTKDYDP--FVTA-LRQGQRLRFRLTANPT----- 24 321956.LBUL_0798_from_1_to_205 82.8% 15.1% ----LNGRNYLLLLSPEKPDLHEFERYG------------KPGTAISKDYEP--FLSR-LSEGQLLQFKLTANPV----- 25 306537.jk0644_from_2_to_217 87.6% 14.3% -KVRGADEHFVYIVGPDSCDPTKIAEQTG-----------SESDPQKASYNR--LLEA-LADGQQWHYEVVLNPV----- 26 106370.Francci3_0022_from_2_to_267 91.0% 14.3% -GADRPHRAEVLVLTESTPSWEHLIEQ------AGWIHTDEPQVLV-RDYQP--LLDR-LHTGREFRFRLRANTVSATRT 27 326424.FRAAL0457_from_28_to_266 88.0% 13.5% ----RPHRAEVLILTESRPSWEHLIEQ------AGWPNAEDPQALV-RDYQP--LLDR-IQAGREFAFRLRANPVAATRQ 28 247156.nfa44230_from_1_to_222 85.8% 13.3% ----RDHAVDLYVVSPSEPDFTHIVEQ------AGWP---TTTAWTTRKYGP--LLDR-LAVDQQWHFRLTANPV----- 29 269800.Tfu_1596_from_1_to_205 76.8% 13.9% ----SRAEVFLYIVSPPKPDLTHLVEQ------AGWP---TQPTWESYDYTP--FLSR-LAKGDVWAFRLTANPV----- 30 338966.Ppro_2338_from_1_to_222 83.7% 12.7% -ETDSSGYPRIIVQSRNIPDWGGVGVNGWI----------QQADPA-IDLKERLKLDL-LKAEQRFRFRLRANPC----- 31 399739.Pmen_3756_from_1_to_203 82.0% 17.6% -GSNAWATPVVLVQSTLAGDWSALQVL-------------PNYLQREIESKPLEFQAW-MEGGARYRFRLLANPT----- 32 321327.CYA_0730_from_1_to_204 81.5% 16.2% -----PDGCTILVQSVIQPDWSRLPQGY------------VQRDPEVKIFDL--RPEV-LSKGRCFQFRLRANPS----- 33 255470.cbdb_A1519_from_1_to_206 84.5% 14.0% -MNEQTGGISVLIQSEKKPFWTNLNG--------------YTEFVTECKCKE--FKPA-LAPGQVLRFRLRANPT----- 34 357808.RoseRS_0646_from_1_to_237 88.0% 12.8% -ISDMPWLVRLLVQSREQPDWSHIPDRMFGPALD------ERGNPALRRIDD--EYAR-IRSDMQFLFRLLANPTRRL-- 35 292459.STH669_from_1_to_223 86.7% 15.0% -LNRYSGQVLLYVQSRVEPDWGRLPAGYLTPAD-------GLPNPAVKRVDE--AYAR-IREGRVLRFRLRANPT----- 36 351160.RCIX1152_from_1_to_248 88.0% 15.2% -IHPRSGAIVLLVQSQEKPDWSKLPEGYLLENT-------GTENPACKAIDE--QYGK-IKAGDVYAFRLRANPTKKIG- 37 335543.Sfum_2829_from_1_to_201 82.8% 13.7% -PENDDRIVRIMVQSDGSPSWELF----------------TERHPCVIDMRTKVFSPA-LRAGHSYRFRLRANPA----- 38 357804.Ping_1587_from_1_to_178 72.1% 12.8% ----DRQSCKVLLQSSTEPK--------------------SSEQAKVLASKS--FLAE-IKQDAFYKFKLLAYPT----- 39 300267.SDY_2955_from_1_to_198 81.5% 15.8% -KRNTPEGCHVLLQSAQMPV--------------------STAVATVIKTKQ--VEFQ-LQVGVPLYFRLRANPIKTI-- 40 243231.GSU1389_from_1_to_201 82.8% 18.7% --RSGQQSVEVLLQSRREPTMA------------------ASREVLLMGSKP--YLLS-LQQDQQLRFMLVANPIKTI-- consensus/100% ..................................................t...........t..h.a.h.h.s...... consensus/90% ......t...hhh.u...s............................ht.p...h....ht.st.htFplhsssh..... consensus/80% ......t..hhhl.Stt.P.......................t..t.hthc...h.st.httsp.htFpLpANPs..... consensus/70% ....tttt.hhhl.StptPt....................ttthht.hphcs..h.st.lptGpthtFcLpANPs..... cov pid 161 . . . 2 . . . . 240 1 243233.MCA0931_from_5_to_237 100.0% 100.0% ----------SRLGRN--------------EDDVYRRHLRDCD--ARAQS---PDSREMV--YRRWLT--RQ-------- 2 391165.GbCGDNIH1_1697_from_2_to_239 93.1% 22.8% QHDQESEKMQERDAFL-----------------AEALHNHADD--KTGMK---SANRTREMVYREWLA--ERMP------ 3 269796.Rru_A0346_from_4_to_241 88.8% 22.3% P-AGVFPKGAEVDAFL--------------LEALRRFPEGRPA--EGVAG---APITREG-VYFQWLA--ERLS------ 4 257309.DIP2212_from_5_to_227 87.6% 12.3% -----------RRQTT--------------EHNGRKRITTSPVPFDSDEK---APSHITR--MTPWVQ--KKLN------ 5 194439.CT1974_from_1_to_202 80.3% 14.1% ---------------------------------------RKEN--KSGKR---VPIKTRE-EVAAWFG--GKSQTS---- 6 351605.Gura_0829_from_3_to_226 87.1% 15.4% ---------RAAVQRD--------------ANGEQVLDANGKR--RRGKR---VPLVKPD-ELRAWLV--RKGEVRCRDK 7 269800.Tfu_1588_from_2_to_225 88.8% 14.8% ----------KRLGRS--------------ENNTQRLGLKEPP--KKPRE-YTWALRGAA--AEEWWH--SRAAA----- 8 227882.SAV7538_from_3_to_217 85.8% 14.5% -----------------------------------RKPGANTR--ALYNLPAVVPLNGAA--ADEWWT--RQADA----- 9 259564.Mbur_0598_from_5_to_222 86.7% 17.3% ENDKQ----HRHDVV---------------MDEKFRLKMENGG--DIEPN--MPDIVQRK--GSEWLL--RKGDM----- 10 295319.SPA2795_from_1_to_232 85.4% 16.9% ---------KRSDVM---------------MNAKHQAKANGV---EKERW---WELQQQA--AQAWLE--QQGQQ----- 11 290339.ESA_02833_from_1_to_212 85.0% 18.6% ---------KRHDVL---------------MNAKREWQLNQ----KQGAL---WTMQEQA--ALAWLD--AQGEK----- 12 99287.STM2939_from_1_to_212 85.0% 17.0% ---------KRHDLL---------------MEAKRQRKTQG----DSQDI---WSYQQQA--ALTWLA--RQGEQ----- 13 155864.Z4065_from_1_to_212 85.0% 16.6% ---------KRHDLL---------------MEAKRQVRGQA----EGSDV---WLHQQQA--ALDWLA--AQGER----- 14 400668.Mmwyl1_3543_from_1_to_223 86.7% 13.4% EKGKS----KRHDVM---------------MHAKKAAKESGVS--DSEEI---RLIMEQA--AQEWIANPKRLEN----- 15 243265.plu0750_from_1_to_223 86.7% 13.4% PSGKR----QRHDVL---------------MHAKFQAKQQGET--EQGKI---KAMMENA--ARNWLLNHRRMQQ----- 16 290398.Csal_0231_from_1_to_229 89.3% 16.1% GEGQR---SHRADVL---------------MNARKPF-SPGER--TSQAC---VDAMETA--ARDWLA--ERAPR----- 17 269796.Rru_A0170_from_2_to_217 83.3% 16.1% AGETR---GKRVDAI---------------MHAKTRSATPL----TVEDR---ERVALD------WLL--DRQQ------ 18 391165.GbCGDNIH1_1376_from_3_to_226 89.7% 15.7% --------GKREDVV---------------KAPIDALEQSE----RAERR---MEIASSA--GKAWLE--QQGEK----- 19 349163.Acry_1809_from_4_to_227 87.1% 18.9% PGSGR---GKRHDVV---------------MDVLRHHPKGE----RASHR---LGLVTEV--GAAWLV--RQGER----- 20 323259.Mhun_1376_from_1_to_225 86.3% 11.3% PDPDRKRIRHRHDVI---------------MDAKRRLNEAN----SSFSM---SDLVQQE--SVRWLR--QRSEK----- 21 207559.Dde_0860_from_1_to_218 85.4% 14.7% NGKQR-----RFDIV---------------QDACLRMKELNQNA-QMPTR---AEIAQEA--GTRWLL--ARQQA----- 22 355277.LBJ_2453_from_1_to_265 91.8% 14.4% YRSLFQEELEGFPDKFDPSDRVSFLEGKSKLEDLKKTLTKDQIQKLKSKR---VGIYHEK-ELLNWLS--KKGSD----- 23 321967.LSEI_0354_from_1_to_212 84.1% 17.3% ------------------------------------RAIATPG--QRGHV---APHVTVA-QQMAWLS--ERAAA----- 24 321956.LBUL_0798_from_1_to_205 82.8% 15.1% -----------------------------------RRGGKSSS--HPGSL---IPCFAVD-EQMKWLQ--GKAEK----- 25 306537.jk0644_from_2_to_217 87.6% 14.3% --------------------------------AAKKAPGSPRG--TRGKL---TALVGEA-AQLEWFN--TKAKS----- 26 106370.Francci3_0022_from_2_to_267 91.0% 14.3% PDN---------------------------PSPAQKEHLAAPR--PRGVR---VGHRTAA-HQTTWLT--DRIDR----- 27 326424.FRAAL0457_from_28_to_266 88.0% 13.5% PTS---------------------------PSVAQKERLAGPR--PRGVR---VAHRTAG-QQLAWFT--DRVDR----- 28 247156.nfa44230_from_1_to_222 85.8% 13.3% -------------------------------RAAMNRDAEAPL--TRGKR---RGLTVAG--QMGWLQ--DKSAS----- 29 269800.Tfu_1596_from_1_to_205 76.8% 13.9% --------------------------------HSIRRKAGEPT--KLTAH-----LTQRY--QKKWLL--QRQDA----- 30 338966.Ppro_2338_from_1_to_222 83.7% 12.7% -----------------------------------------VT--KNGKR---LGLLKQD-EQEKWLK--RKGAQ----- 31 399739.Pmen_3756_from_1_to_203 82.0% 17.6% -----------------------------------------VT--RQGKR---YGLAGEQ-EQLAWLS--RQGER----- 32 321327.CYA_0730_from_1_to_204 81.5% 16.2% ---------------------------------------KRDK--KTRKI---VGFFRSE-DQLEWLR--RQGFQ----- 33 255470.cbdb_A1519_from_1_to_206 84.5% 14.0% ---------------------------------------KRSK--STGKR---EGILKTE-EQVEWLR--KKGMN----- 34 357808.RoseRS_0646_from_1_to_237 88.0% 12.8% ---------------------------------SNRSSERDDR--LLGKR---VALLREE-EQIAWLA--HKGEQ----- 35 292459.STH669_from_1_to_223 86.7% 15.0% ------------------------------RKIDTKSGPNGEK--RNGRR---VPLSGLD-AQLGWME--RKARE----- 36 351160.RCIX1152_from_1_to_248 88.0% 15.2% ------------------------------TSRIEDIKAGKPK--NNGRR---VPIRNES-DQILWLK--RKGAA----- 37 335543.Sfum_2829_from_1_to_201 82.8% 13.7% -----------------------------------------VK--RNGKR---YGLIRDE-TLEEWLR--RKEPA----- 38 357804.Ping_1587_from_1_to_178 72.1% 12.8% ----------------------------------------KCL--SQGKK---VIEIKEANEQVQWLQ--RKLS------ 39 300267.SDY_2955_from_1_to_198 81.5% 15.8% ------------------------------LDNQKRLDSKGNI--KRCRV---PLIKEAE--QIAWLQ--RKLG------ 40 243231.GSU1389_from_1_to_201 82.8% 18.7% ------------------------------NDESARLNSANEI--KKCRV---PLIREED--LRAWLK--RKLE------ consensus/100% .................................................................Wh...tp........ consensus/90% .............................................t..th.....h.t.t....tWh...tp........ consensus/80% .......................................tt....pttph.....hhttt...htWLt..ppht...... consensus/70% ...................................th..tt....ppsph...hshhppt..thtWLt..c+tpt..... cov pid 241 : . . . . 3 . . 320 1 243233.MCA0931_from_5_to_237 100.0% 100.0% -------FGSAAT----------------------------LDDFSLDGFRYLRLLRKARGTRSG-------FLAPQALF 2 391165.GbCGDNIH1_1697_from_2_to_239 93.1% 22.8% -------WAT-------------------------------LETARLAHFQRRRVLRNGNG-----------IEGPDATI 3 269796.Rru_A0346_from_4_to_241 88.8% 22.3% --------GAAR-----------------------------VEEVRLARFERRAVLRGSKS-----------IEGPDAVF 4 257309.DIP2212_from_5_to_227 87.6% 12.3% --------GA-------------------------------LRNVEILNHQREVIGTKHRGGKAAS------MTIQIDTV 5 194439.CT1974_from_1_to_202 80.3% 14.1% -------WGFSVD----------------------------PARLDVRMLPVMQFSKQGDRT----------VTHGAARV 6 351605.Gura_0829_from_3_to_226 87.1% 15.4% ETGLDVPGGFRLVE---------------------------ERSLEISPMVESHFRKKGQS-----------GYHGGVQF 7 269800.Tfu_1588_from_2_to_225 88.8% 14.8% -------NGLELLS---------------------------TYAQTLDDVRDPGTADRSRK-----------IRHPAVRF 8 227882.SAV7538_from_3_to_217 85.8% 14.5% -------AGLKPLA---------------------------LHPHPLDAAQGVRAGNGDKQR----------IRHNRIRF 9 259564.Mbur_0598_from_5_to_222 86.7% 17.3% -------NGFSIN----------------------------AEQIRVDAYQNHKLFKPKGKHH---------VSFSTVDI 10 295319.SPA2795_from_1_to_232 85.4% 16.9% -------HGFRLIAPEPDDFAMWAGDEYSELQ---------AHCGCVQAYQQHRFVRKDQETP---------ITFSSVDF 11 290339.ESA_02833_from_1_to_212 85.0% 18.6% -------GGFR------------------------------LSQACVAAYRQQQVVKKRGEL----------IQFSTVDY 12 99287.STM2939_from_1_to_212 85.0% 17.0% -------NGFTL------------------------------REASVDAYRQQQIRRGKDRQM---------IQFSSVDY 13 155864.Z4065_from_1_to_212 85.0% 16.6% -------SGFTL------------------------------LDTSVDAYRQQQLRRENSRQL---------IQFSSVDY 14 400668.Mmwyl1_3543_from_1_to_223 86.7% 13.4% -------WGFTL-----------------------------DFLPEVQTYMQHRSDKNREDK----------IRFSSVDY 15 243265.plu0750_from_1_to_223 86.7% 13.4% -------WGIQF-----------------------------DNLLDIEGYTQHRSVKKQGQK----------IQFSSVDF 16 290398.Csal_0231_from_1_to_229 89.3% 16.1% -------FGFEL-----------------------------PVAPEMGAYRQHELKKSDRREP---------IRFSSVDY 17 269796.Rru_A0170_from_2_to_217 83.3% 16.1% --------GFGVLFE--------------------------RALCSAGGYRQVRVPRGGKA-----------ITFSVIDY 18 391165.GbCGDNIH1_1376_from_3_to_226 89.7% 15.7% -------SGFR------------------------------VITAIAEDYRQLSLPRLGAIDRNA-------MTLGILDL 19 349163.Acry_1809_from_4_to_227 87.1% 18.9% -------HGFVV-----------------------------EGQPACDGYEAIRVLRGRGEKP---------LTFSQIDF 20 323259.Mhun_1376_from_1_to_225 86.3% 11.3% -------GGFSLY----------------------------EDRVIAGGYRKMQFSQGRKKNT---------ISISVVDC 21 207559.Dde_0860_from_1_to_218 85.4% 14.7% -------LGLSIE----------------------------SAAILVEGCKVERFVKRATRDTRSGV-----VSLGIMDL 22 355277.LBJ_2453_from_1_to_265 91.8% 14.4% -------NGFSLL----------------------------DAVVEFQSDFSANKIKGSLSPSI--------PKIHTVSF 23 321967.LSEI_0354_from_1_to_212 84.1% 17.3% -------LGFELPIDDD------------------------GPQFQIVGRDYPALRRAQGKP----------VRLSRVSF 24 321956.LBUL_0798_from_1_to_205 82.8% 15.1% -------NGFEL------------------------------VAAEVVGHDRPLLRKKTH------------VALNRTVF 25 306537.jk0644_from_2_to_217 87.6% 14.3% -------CGFTPLE---------------------------TLIVERKTLRFSKLAKNPKGRQ---------VVIGTVRY 26 106370.Francci3_0022_from_2_to_267 91.0% 14.3% -------WGFTLLTTADLDGPRNQPDGPRNQPDGPGDTDEPAPALRLTARERLTFPKKAKNTEKTGRR----VVLNTATF 27 326424.FRAAL0457_from_28_to_266 88.0% 13.5% -------WGFTPLTTET------------------------GPAVQLNARERLTFRKRPPDGGNGGKNKGHQVVLSTATF 28 247156.nfa44230_from_1_to_222 85.8% 13.3% -------SGFRLGTCRTLEGD--------------------VPDAVITERTTERFRRGSAT-----------VTLSVVTY 29 269800.Tfu_1596_from_1_to_205 76.8% 13.9% -------AGFRVVEKPAEKRRLPEGD---------------EHELIVHNRRDWNFSKGARKGRP--------VSLVTVTF 30 338966.Ppro_2338_from_1_to_222 83.7% 12.7% -------HGFCLPEFLSFDYYESS-----------------EDRIDVRISQEQMLSDKQHSDNS--------IRVFSVLY 31 399739.Pmen_3756_from_1_to_203 82.0% 17.6% -------HGFE------------------------------VEAALVTASDVLASHKGDSR-----------ISLQRVCF 32 321327.CYA_0730_from_1_to_204 81.5% 16.2% -------HGFEV-----------------------------LAAEGIPSPQIFGIKKGLSGP----------VRIHTVLF 33 255470.cbdb_A1519_from_1_to_206 84.5% 14.0% -------GGFEVC----------------------------EVFTVDEGFAKDKMTDTDNAGHH--------TNMLSVRF 34 357808.RoseRS_0646_from_1_to_237 88.0% 12.8% -------HGFRLLST--------------------------SVNPDVPAVQAAKQADEHGWRKATQTQTMH-LTFGAVLF 35 292459.STH669_from_1_to_223 86.7% 15.0% -------HGFELL----------------------------EATVAAAGASERVRSYTTGR------------TFQGVLF 36 351160.RCIX1152_from_1_to_248 88.0% 15.2% -------GGFELMSTKRFSELSDVLISEEGH----------QKIYTFDTGIKAKVQKNARENR---------LTFGSVLF 37 335543.Sfum_2829_from_1_to_201 82.8% 13.7% -------LGLQF-----------------------------RSVLALDEGYVTGHKEGSGHPQR--------INIKTARF 38 357804.Ping_1587_from_1_to_178 72.1% 12.8% -----------------------------------------GANVTVTAMDDLMVRSKKS------------YNSRFVCF 39 300267.SDY_2955_from_1_to_198 81.5% 15.8% -------NAARV-----------------------------EDVHPISERPQYFSGEGKN------------GKIQTVCF 40 243231.GSU1389_from_1_to_201 82.8% 18.7% --------GVAV-----------------------------IEAVEVEKRPAMNFRKAREKRV---------GKVQAVSF consensus/100% ...............................................................................h consensus/90% ........Ght...................................h.th......pttt............h.h..h.h consensus/80% ........Ghp.................................h.htshtt.th.ctttt...........hphttspa consensus/70% ........GFph...............................thtlpshpp.phh+ttpp...........lphsslpa cov pid 321 . . : ] 355 1 243233.MCA0931_from_5_to_237 100.0% 100.0% RGTLSVRDGAGFGALLARGIGRHRAFGFGMLLLRP 2 391165.GbCGDNIH1_1697_from_2_to_239 93.1% 22.8% HGTMIIGDPAQFSEALRKGIGRHSAYGYGMMMLRP 3 269796.Rru_A0346_from_4_to_241 88.8% 22.3% HGELVILDGAKFAGHLASGLGRHTAYGYGMMLLRP 4 257309.DIP2212_from_5_to_227 87.6% 12.3% DGFGIVEDPELLNELILHGVGRAKAYGCGLLSVSE 5 194439.CT1974_from_1_to_202 80.3% 14.1% SGMLRVENRDLFIESFNKGIGRGRAFGFGLLQIEP 6 351605.Gura_0829_from_3_to_226 87.1% 15.4% RGTLEVTDRAKFIESYQSGIGSAKGFGFGLLLLAP 7 269800.Tfu_1588_from_2_to_225 88.8% 14.8% DGEAVISDVDAVRHAVLNGIGRGKSYGCGLLSLAL 8 227882.SAV7538_from_3_to_217 85.8% 14.5% DGSATITDPDLLRQKITEGIGRGKAYGCGLLSIAP 9 259564.Mbur_0598_from_5_to_222 86.7% 17.3% VGTLTVTDPDIFRDALFKGIGPAKGFGCGMLLVRP 10 295319.SPA2795_from_1_to_232 85.4% 16.9% SGALCITDAALFKQALFSGLGKSKALGCGMLMVKR 11 290339.ESA_02833_from_1_to_212 85.0% 18.6% EGALIVTDPARFIARLHEGIGKCRAFGCGLMLIKP 12 99287.STM2939_from_1_to_212 85.0% 17.0% TGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKP 13 155864.Z4065_from_1_to_212 85.0% 16.6% TGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKP 14 400668.Mmwyl1_3543_from_1_to_223 86.7% 13.4% QGVLTVQDPEKFLEQLEKGFGRAKSLGCGLMLIKS 15 243265.plu0750_from_1_to_223 86.7% 13.4% QGLLTITNGELYLEQYAKGFGRAKAMGCGLMLIRT 16 290398.Csal_0231_from_1_to_229 89.3% 16.1% EGLLEVTDPRRLIETLAHGVGRAKAFGCGLMLLRR 17 269796.Rru_A0170_from_2_to_217 83.3% 16.1% EGVFTVRDPGLLGQALVRGIGKAKAYGCGLMLLRR 18 391165.GbCGDNIH1_1376_from_3_to_226 89.7% 15.7% SGHLEMTDPALFLTNLAQGFGRAKSFGCGLMIIRR 19 349163.Acry_1809_from_4_to_227 87.1% 18.9% AGVLSVTDPARFIAAIGHGFGRARAFGCGLMLIRR 20 323259.Mhun_1376_from_1_to_225 86.3% 11.3% DGVLRVTDPDLFLQMICNGLGPAKGFGCGLMMVKR 21 207559.Dde_0860_from_1_to_218 85.4% 14.7% QGTAEVKDPQLLLQALFQGVGPAKGFGCGLLLIRR 22 355277.LBJ_2453_from_1_to_265 91.8% 14.4% SGILKIMDPALFKIAYTKGIGTGKAFGCGMLLLAR 23 321967.LSEI_0354_from_1_to_212 84.1% 17.3% EGTLVVSDLVRFKETLATGIGREKAFGMGLLTVIP 24 321956.LBUL_0798_from_1_to_205 82.8% 15.1% EGRLKISNLDQFKAMLTSGIGREKAFGMGLMTVIP 25 306537.jk0644_from_2_to_217 87.6% 14.3% RGTLQIDDVETFKKSLVEGIGRGKAYGCGLLTLAK 26 106370.Francci3_0022_from_2_to_267 91.0% 14.3% EGALRVTDPARARATLLHGVGPAKAYGCGLITLAP 27 326424.FRAAL0457_from_28_to_266 88.0% 13.5% DGALRVVDPDLARRALLSGVGAAKAYGCGLLTLAP 28 247156.nfa44230_from_1_to_222 85.8% 13.3% EGVLAVSDPEKLRTALVNGIGRAKGYGCGLLTLAP 29 269800.Tfu_1596_from_1_to_205 76.8% 13.9% DGRLEVTDPDALRRALISGIGRAKAYGCGLMTLAP 30 338966.Ppro_2338_from_1_to_222 83.7% 12.7% DGILTITEPEMFKIALKTGIGHGKVMGLGLLSVVP 31 399739.Pmen_3756_from_1_to_203 82.0% 17.6% EGRLQVRELASFSGALQQGIGPGKAFGCGLLSLGR 32 321327.CYA_0730_from_1_to_204 81.5% 16.2% QGILRVTDSEAFVKAVQQGIGRGRSYGCGLLSLSK 33 255470.cbdb_A1519_from_1_to_206 84.5% 14.0% DGLLRVTDSDAFQSTLRDGIGSAKGFGFGLLSVAS 34 357808.RoseRS_0646_from_1_to_237 88.0% 12.8% TGYLKVTDADRFRTALEHGIGSGKAFGFGLLSIAA 35 292459.STH669_from_1_to_223 86.7% 15.0% EGRLVVRDAGRFREALERGIGPGKAYGYGLLSVGP 36 351160.RCIX1152_from_1_to_248 88.0% 15.2% EGTLKVTNAEKFLETLKSGIGSGKAYGFGLLSLAP 37 335543.Sfum_2829_from_1_to_201 82.8% 13.7% EGILTVSEPHLVQNALCCGIGPAKAFGCGLLSLAR 38 357804.Ping_1587_from_1_to_178 72.1% 12.8% EGILQVTDSEQIQRALVMGIGRKKHAGAGLLSLAR 39 300267.SDY_2955_from_1_to_198 81.5% 15.8% EGVLTINDAPALIDLLQQGIGPAKSMGCGLLSLAP 40 243231.GSU1389_from_1_to_201 82.8% 18.7% HGVLSVTDPVGLISLINTGIGPAKAFGCGLLSLAR consensus/100% .G.h.h.p...h...h..GhG.tp.hGhGhh.l.. consensus/90% pGhh.lp-.thh.t.l.pGhG.t+uhGhGhh.lt. consensus/80% pGhLtlpDsthhhttl.pGlG.u+uaGhGLh.lt. consensus/70% pGhLplsDsshhhptLtpGlGpuKuaGsGLh.lt.