cov pid 1 [ . . . . : . . . 80 1 1381144/1-153 100.0% 100.0% TSFITVFKYIDDKDVFQKFYARMLAK-------------RLIHGLSMSMDSEEAMINKLKQACGY--EFTSKLHRMYTDM 2 1146334/1-149 96.1% 49.0% NQVMVVFKYIEDKDVFQKYYSKMLAK-------------RLVNHTSASDDAEAMMISKLKQTCGY--EYTVKLQRMFQDI 3 1381134/1-149 96.1% 39.4% TKIMVVFKYIDDKDVFSKFYTKMFSK-------------RLISELSASDEAEANFITKLKSMCGY--EYTARLSKMVNDT 4 e255937/1-145 94.8% 32.7% DKALTVLKYISEKDVFQLYYQNWFSE-------------RIINNSSASDDAEEKFITNLTATEGL--EYTRNLVKMVEDA 5 1381146/1-151 96.7% 33.3% DKAMVLFRFMQEKDVFERYYKQHLAR-------------RLLTNKSVSDDSEKNMISKLKTECGC--QFTSKLEGMFRDM 6 1381138/1-149 96.1% 34.8% DNVMILFRYLQEKDVFEKYFKQYLAK-------------RLLLDKSCSDDVEKALLAKLKTECGC--QFTQKLENMFRDK 7 984700/1-165 96.7% 30.0% QNSVTLFRFISEKDVFEKYYKTHLAKRYALIVFTVFNTFRLLNNRSISSDAELGMISRLKQEAGN--VFTQKLEGMFNDM 8 1736921/1-153 96.7% 37.3% EDIITIFKYLTDKDAFETHYRRLFAK-------------RLIHGTSTSAEDEENIIQRLQAANSM--EYTGKITKMFQDI 9 2408025/1-148 96.1% 40.3% SSIIIIFRYVEDKDVFQNFYTKLLAK-------------RLVNGTSNSQDAESSMLSKLKEVCGF--EYTSKLQRMFQDI 10 166909/1-152 96.1% 32.9% KEVLLVLKYVQNKDVFMRYHKAHLTR-------------RLILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDI 11 e236351/1-153 96.7% 27.2% NQVLLVLKYVENKDVFMRFHRAHLSR-------------RLILEMSADQEKEEMMVTKLR-ECGMPSDAVNKLSRMLQDI 12 e349601/1-147 95.4% 27.9% SEILDLFRYIASKDIFEAYYKLDIAK-------------RLLLNKSASAQNELMLLDMLKKTCGS--QFTHSLEGMFRDV 13 2281115/1-150 96.1% 33.3% EKVVKLLAYISDKDLFAEFYRKKLAR-------------RLLFDRSANDDHERSILTKLKQQCGG--QFTSKMEGMVTDL 14 868263/1-141 91.5% 27.3% DEAIVLFRYLRGKDVFEAYYKRGLAK-------------RLFLERSASVDAG-------KDECGS--AFTYKLEGMFKDM 15 e243365/1-150 96.1% 24.4% LDSTKLIGLLTEKDIFEKIYKKQLSR-------------RLLQQRS-LVEIEKWMVQMIKKVLGT--FFTSKLEIMLRDI 16 289695/1-154 96.7% 21.4% DVFNMLVSVYGSKELFVKEYRNLLAE-------------RLSSSDNKDPEFEKRYLDLLKLRFQY--SELQHCEVMLRDV consensus/100% .....lhthhttK-hF...at..hsc.............Rl..t.s...p.t.......p...t.....h.ph..MhpDh consensus/90% pp.hhlhthhtpKDlF.thapt.huc.............RLh.t.S.s.-.E..hlt.lp...u....hs.phthMhpDh consensus/80% pphhhlh+alppKDlFtpaYpphlu+.............RLl.phShss-.Et.hlphL+ttsGh..paTt+LptMhpDh consensus/70% pphhhlh+YlppKDlFppaYpphLu+.............RLl.ppSsss-tEt.hlshLKttsGh..paTpKLptMhpDh cov pid 81 . 1 . . . . : . 160 1 1381144/1-153 100.0% 100.0% SVSADLNNKFNNFIKN-----QDTVIDLGISFQIYVLQAGAWPLTQAP--SSTFAIPQELEKSVQMFELFYSQHFSGRKL 2 1146334/1-149 96.1% 49.0% GVSKDLNSYFKQYLAEKN---LTMEIDFG----IEVLSSGSWPFQLS----NNFLLPSELERSVRQFNEFYAARHSGRKL 3 1381134/1-149 96.1% 39.4% QVSKDLTADFKEKKADML---GQKSVEFN----VLVLSSGSWPTFPT----TPITLPQQLSKTIEIFGQFYNEKFNGRRL 4 e255937/1-145 94.8% 32.7% KISKDLTTEFKDIK-------TEKSIDFN----VILQTTGAWPSLDQ----IKIILPRELSTILKEFDTFYNASHNGRRL 5 1381146/1-151 96.7% 33.3% SISNTTMDEFRQHLQATG--VSLGGVDLT----VRVLTTGYWPTQSAT---PKCNIPPAPRHAFEIFRRFYLAKHSGRQL 6 1381138/1-149 96.1% 34.8% ELWLTLATSFRDWREAQP---TKMSIDIS----LRVLTAGVWPTVQC----NPVVLPQELSVAYEMFTQYYTEKHTGRKL 7 984700/1-165 96.7% 30.0% NLSQELLQEYKHNSALQS---AKPALDLN----VSILASTFWPIDLSPHK-IKCNFPKVLLAQIDQFTDFYLSKHTGRKL 8 1736921/1-153 96.7% 37.3% RLSKILEDDFAVALKNEPDYSKAKYPDLQ----PFVLAENMWPFSYQE---VEFKLPKELVPSHEKLKESYSQKHNGRIL 9 2408025/1-148 96.1% 40.3% SLSQEITEAFWQLPQ-----SRAGNIDFS----ALVLGTSFWPLSPNN---VNFHLPEELVPLYEGFQNYYYSCHNGRKL 10 166909/1-152 96.1% 32.9% KVSEDLNQAFKEMHKNNKL---ALPADSVN---IKILNAGAWSRSSE---KVFVSLPTELEDLIPEVEEFYKKNHSGRKL 11 e236351/1-153 96.7% 27.2% ELNKDMNSSFKKALTGTNN--NKSIADSIN---MKVLNGGAWGRGGSE--RIRFSLPRELEDFVPEMV-FGTANGGRFDL 12 e349601/1-147 95.4% 27.9% NISKEFTSSFRHSKA-----AHNLHRDLY----VNVLSQAYWPSYPE----SHIRLPDDMQQDLDCFEKFYLSKQVGKKI 13 2281115/1-150 96.1% 33.3% TLARENQNSFEDYLGSNP--AANPGIDLT----VTVLTTGFWPSYKS----FDINLPSEMIKCVEVFKGFYETKTKHRKL 14 868263/1-141 91.5% 27.3% DASENYGRLFNQYLEHM----NKEKANFT----ARVITPEYWPTYDT----YEINIPKEMRDTLTDYQDFYRVQHGNRNV 15 e243365/1-150 96.1% 24.4% SLSSEMYQAFQHSTI-----NSIEYLSFA----PQVLTRTSWPFQSTNPIDEGISLPPRMSQILAGFEGYYSLKYKERVL 16 289695/1-154 96.7% 21.4% IHSLDIDKKFEDMSERSAGNYDVPIIPIS----ACIISSHYWPKLETEK--TEALMPQPLQAAMDVYQETYLDVKRDRKL consensus/100% .h.....t.a.........................l.t.t.Ws...t......h.hP......h..h...h.....th.l consensus/90% ths.ph.p.Ftp.............hs........llstt.Ws...t......h.hP..h...h..ht.hY..phtt+.l consensus/80% plSpphtptFpphht......tt..h-hs....h.lLssshWPh..p.....th.lPpph.t.hp.aptaY.tptssRpL consensus/70% plSp-htptFpphht......tt..hDhs....hhVLssshWPh..s.....phtlPpchpt.hp.appaY.tpassRcL cov pid 161 . ] 175 1 1381144/1-153 100.0% 100.0% TWLHYLCTGEVKMNY 2 1146334/1-149 96.1% 49.0% NWLYQMCKGELIMNV 3 1381134/1-149 96.1% 39.4% TWVYSQSRGEITSTA 4 e255937/1-145 94.8% 32.7% NWAYSQCRGEVNSKA 5 1381146/1-151 96.7% 33.3% TLQHHMGSADLNATF 6 1381138/1-149 96.1% 34.8% TINTLLGNADVKATF 7 984700/1-165 96.7% 30.0% LWYPSMGSADVRVNF 8 1736921/1-153 96.7% 37.3% KWLWPLCRGELKADI 9 2408025/1-148 96.1% 40.3% SWLFHLSKGEIKARI 10 166909/1-152 96.1% 32.9% HWHHLMSNGIITFKN 11 e236351/1-153 96.7% 27.2% ECTTFQMAVLFCFND 12 e349601/1-147 95.4% 27.9% SWYASLGHCIVKARF 13 2281115/1-150 96.1% 33.3% TWIYSLGTCHINGKF 14 868263/1-141 91.5% 27.3% KWHHGLASAVISASF 15 e243365/1-150 96.1% 24.4% KWAHHLSVIEIGCQF 16 289695/1-154 96.7% 21.4% EWLRSVGCVEVSINI consensus/100% .h......h.h..p. consensus/90% ph.h..sts.lt.p. consensus/80% pWhh.hsps.lphph consensus/70% pWhh.hspsclphph