cov pid 1 [ . . . . : . . . 80 1 O62405/7-140 100.0% 100.0% TRMVLIYGGITSSMT---STTT-TFETVEDCKNGCFEKEDCI----------------MMYFIF------EKCRFYSYAT 2 O62406/5-135 97.9% 53.7% VKMVLIYGSVTSDAT---GIST-TFSTVEDCKNGCFGSESCI----------------IAYFSL------TTCVFYNYVN 3 O62150/6-138 100.0% 51.6% VKMVLFYGTIVTGIA---TNVT-SSKSVGDCRNGCFEDEHCF----------------LMYFRV------EKCYFHSYLN 4 Q9U3T2/1-131 96.8% 36.8% VKMFQIYGKVSNASV---TKST-NFMTLTECTNGCYVNPNCS----------------LAYFN-------ESCLYYDQLA 5 Q9U270/6-104 64.2% 24.2% VKMMELFGRVTTAAL---SIPT-SYGTVEDCILTCYATPDCL----------------LAYFS-------PRCYQY---- 6 O62154/5-107 68.4% 27.4% VKMIKIFGKVT--ET---TEPQ-AFNTVKDCIDECFEDSDCL----------------LAFFN-------SVCSHYY--- 7 O62157/5-107 68.4% 24.2% VKMIKIFGKVT--ET---TEPQ-AFDAVKDCIDECFEDSECL----------------LAFFN-------SACFHYY--- 8 O62156/5-128 90.5% 31.6% LKMIKIFG-YT--DI---LQLQ-NFENVQSCIDGCFEQPNCL----------------AVHFK-------SVCSHYFV-- 9 O45492/4-130 95.8% 25.5% EKMLLFYGKIVKFNKE--AISI-TVTDLDSCVQNCFEESTFI----------------LAFWNSS-----GYCNLFGFSS 10 Q9U2V0/4-129 94.7% 20.6% EKMLIFYGTIDKFN----VNPL-INMDLNSCVRIVSDFSTVI----------------LASWNSS-----ENCHLFGFDQ 11 O17672/6-139 89.5% 21.5% QKMILIHGAPMIY----FNFTE-KTATWETCITTCYSSPGCI----------------VA-GF-ED----GICKLFEI-- 12 O01337/28-161 89.5% 21.5% HIMVLLHGELTNF----LNFTE-KTVNWSSCVTNCHNKLDCI----------------VA-GF-EN----GTCKLFEI-- 13 O01336/1-106 91.6% 20.6% --MVLMHGEVLTHGGGLSDFTK-KPVNWSTCVTNCHSKVNCI----------------VA-GF-EY----ETCTHIEL-- 14 Q9XVD0/1-135 92.6% 16.5% YTMIVSWGRPTEMSP---GSTV-DQVLWDTCVKYCYNSMYCV----------------LAYG--ND----SSCTLFDF-- 15 CE18536|C27C7- 85.3% 14.4% YTMIVSWGRPTEMSP---GSTV-DQVLWDTCVKYCYNSMYCV----------------LAYG--ND----SSCTLFDF-- 16 O02128/1-110 86.3% 20.4% --MLLFWGYPASSIKF-CEPQS-TIIHFDSCINLCLKETYCM----------------LAFG--ND----SSCTLCDI-- 17 O02127/31-164 88.4% 17.1% VNMLLFWGYPASDTKF-CEPQL-KTSTFNSCIDLCLSETYCM----------------LAFG--ND----SSCTLCDI-- 18 O02131/4-143 88.4% 21.0% VNMLLFWGYPDSGTEN-CVSHS-SVITFEICMNLCLNSYPCM----------------IAYG--NE----NSCTFCNA-- 19 O44831/27-181 91.6% 14.4% SKMIIVRGAPEKSTSY-PTQLY-TGLNYTTCTSKCASSDNCI----------------LSYSN-SS----GYCLLYAV-- 20 O44835/1-131 91.6% 16.2% SIMVSVRGAPEISTSY-STEII-NSLTWDECVKQCLSTEICI----------------MAYSN-SL----NICYLYAV-- 21 O44833/4-135 83.2% 18.2% TYMVAVKGSPVPSTSY-GTSQV-GIADWRDCAQKCLESSTCI----------------LAYS--ST----EVCVLYAV-- 22 Q9U2Q3/1-148 90.5% 17.9% TTMVQVLAKPGPGTISKYSQNV-TAATWIECMKICFADGKCA----------------TVYFLEAT----KQCTKYWM-- 23 Q9U2Q4/173-298 89.5% 11.2% DTMVQVNAKPGP-LMGSRNIKD-NLTSSDECVKYCWKDLNCF----------------VNYYDKDS----KECWWWSI-- 24 O18266/290-424 90.5% 19.4% LQMIVTYGKPTNFTD---ATSF-SESSWESCVEECYLQNTCV----------------LAYSPTSP----LNCQLYPV-- 25 Q9XVJ9/41-183 91.6% 18.6% YSMIVTYGRPTNFSS---SIPN-SAPTWNDCVVQCYISNTCVVIVLNFERNIFDKSIQLAYSPASP----IKCQLFNV-- 26 Q9U2T6/2-127 88.4% 22.5% TKLVLIWGSPNDTEI---SETY--SGSWDECLQKCYYDVTCV----------------VIFRTSA------GCKIYKI-- 27 Q9NA50/2-127 88.4% 21.6% TKLVLIWGSPNDTEI---SETY--SGSWDECLQKCYCDVTCV----------------VIFRTSA------GGEIYKI-- 28 Q9NA49/9-144 88.4% 20.6% LQMVVIWGAPSGVDV---WEPC--SETWKQCLQKCLDEEDCV----------------LIAKITT------NFYIFRQ-- 29 O45481/1-120 86.3% 20.0% --MVVIFGEPTVAGA---QS----SENWENCLEKCWDTWNCV----------------LISKLTS------GCEYYYI-- 30 O61212/9-147 91.6% 15.7% WKFGTIAGEPDDYTN---STAV-QVNNFKECIAKCSAIFDCI----------------IASQKSKS----EPCNLFLW-- 31 O16208/6-143 92.6% 14.6% FKFGTVHGEPDDYAN---STSV-QVKNFKECIEKCSAIFDCI----------------VASQKSPS----EPCNLFLW-- 32 Q9XV53/5-137 91.6% 16.7% YKFGVIDGEPIDLIN---STSV-QVKDFDECVEKCEEDLNCI----------------LAYQKSDS----EPCQLFPW-- 33 Q9U2Q4/5-153 91.6% 17.6% YKFAIVDGEPIVLNA---SSII-QVTSFDECTDKCLEEFDCV----------------VAYQSNAS----DPCYLFQY-- 34 O62451/3-142 89.5% 22.0% LKLMIVYGQISGNT----TSRF-ILNSWEDCLKICFWDSNCL----------------VILDS-------ENVPHFSY-- 35 Q9N522/1-138 89.5% 20.6% LKLIEIYRQILGDS----NYTE-IIDSWNYCMTICYWDVNCL----------------AVHKVG------DGCRRFSY-- 36 Q9XV53/155-299 94.7% 18.9% VTMVQDYAKPGPETVK--PRDA-QISNWDECMHMCYEEEECQ----------------IAYLDSDA----KKCVWYSS-- 37 O01701/2-132 92.6% 19.4% VKLIEIYGTVVDGIS----YGA-TCDDKNSCLSYCYYGSTCI----------------LVYCPSE-----GKCTVFDYIR 38 O16904/1-147 91.6% 14.7% YKMIVTWGKPLKILN----PNI-LNITWEECIDVCWKDTSCV----------------LIYDTS------PTCQFYDV-- 39 O16891/17-147 91.6% 17.0% VKMIVVWGTPVTYSN---PIKY-EGDSLGDCITKCLVE-DCW----------------MVSDYD------TSCYLFPS-- 40 Q9XTS6/1-109 85.3% 16.3% --MMVTFGEPGVYSS--YSNPLPSTDTWEDCLEYCLGLSTCV----------------AVYN--------NNCQMFEI-- 41 O62353/7-157 86.3% 13.8% YSMMVAWGRPTFSLT----NDLLPSITWKTCVSRCFSALYCV----------------LATGNDNVNNTNNKCPSDPL-- 42 Q9NEP2/1-112 87.4% 14.0% --MVVFYGQPVDYS----QVSM-KSYSLSTCIAYCYNMDTCV----------------AVYTPDSS----EVCIVFEF-- 43 O16210/4-141 92.6% 16.5% LKMLKMWGSVSGVLG---SNK---YLNLTDCMSDCLANPECA---------------VVTWRVP------LYCGVFKLVV 44 Q18362/42-166 89.5% 19.0% -SLLFLCCHSCHSFS---STAL-ANTDWDSCIQYCFLSSGCV----------------LAWNN------LTTCYTFNY-- 45 Q9GRV4/2-131 93.7% 20.8% YKMVLIYGTPEDVT----MNPSPLTMDFDACVEYCYGLSACM---------------MVSHAIG-----TQNCIAYEI-- 46 O16726/1-132 82.1% 21.8% LQMVVVYGEPSDMSE---SQEY-QGLSLDDCIATCYWDNNCF----------------LAYYS-------SVCHLFEY-- 47 O45342/3-135 83.2% 16.8% FKMIRVFGRPVELSG---TVEF--NLSIDECTDNCYDDDNCS----------------LSYYIH------SKCYQYNY-- 48 O16209/10-137 80.0% 22.0% FKMIKVHGKVAYHSP---STQG-ILLEVGECVQKCYENEDCI----------------LCYMN-D-----GYCMIYHY-- 49 Q9N4A0/5-137 89.5% 22.9% FTMVVMEGSVATEVP---SVRGTVNETFN-CTAACANDTECI----------------LAYWDSD-----NKCVNYKY-- consensus/100% ..hh...t......................Ch..s.....h.................h.............h....... consensus/90% ..hh.hhut.................shppCht.Ch....Ch................hh............C.hh.... consensus/80% .phlhhhGpss...............shppChp.Ch.p.tCh................lsh.........t.C.ha.h.. consensus/70% hpMlhhaGpsst.t....s.th.t..shppClphChtp.sCl................lsah........t.Chhath.. cov pid 81 . 1 . . . ] 135 1 O62405/7-140 100.0% 100.0% -NGSPFSITEQSK--RQGAY--VAIKTDASNIPNNTCPAT--------FT-NIKF 2 O62406/5-135 97.9% 53.7% -DGKTITVEENSN----NAY--VAIKTNISNIPNGTCPAS--------YN-DLKL 3 O62150/6-138 100.0% 51.6% -TGQLISVVEVHK--SQWAY--VAFKTDISNIPNNTCPES--------YK-DLKF 4 Q9U3T2/1-131 96.8% 36.8% -ENQSILVQEGLS----RNI--VVFKTDISNIPNNTCPES--------YT-NLKF 5 Q9U270/6-104 64.2% 24.2% -----------------------------A-----TCPAS--------YK-NVNF 6 O62154/5-107 68.4% 27.4% -----------------------------TELPDATCPAS--------YK-EIKF 7 O62157/5-107 68.4% 24.2% -----------------------------TELPDATCPAS--------YK-DIKY 8 O62156/5-128 90.5% 31.6% -NNYSVTVVESDR--SEEHY--VAIK---TELPEATCPAS--------YK-DIKY 9 O45492/4-130 95.8% 25.5% -FDEIREIESDEG--DVGQY--LAVK---ADLPNNTCPA---------FPFETDI 10 Q9U2V0/4-129 94.7% 20.6% ILDQILEIKTNEG--DMGQY--LILK---SDQPNSTCPA---------FP-ETDI 11 O17672/6-139 89.5% 21.5% --GSISTIKRLDA--NSGKQ--VAVKII-SNLT--SCASTAAGNSLQSLIEPDQP 12 O01337/28-161 89.5% 21.5% --GKLSTIKRLNS--HYGKM--VAVKTV-TNLT--SCDYSTNGNVLQGFINHDQP 13 O01336/1-106 91.6% 20.6% --GRVFTIKRLNA--YSEKM--VAVKGT-WTIQELKCSEG-----FRMFHRHKGS 14 Q9XVD0/1-135 92.6% 16.5% --GDVSTVEKLDP--EENLK--VAMKIN-NSTADTTCPT----SISGSFPSKMRS 15 CE18536|C27C7- 85.3% 14.4% --GDVSTVEKLDP--EENLK--VAMKV---------CAIFLG-IKLTIPR-QILP 16 O02128/1-110 86.3% 20.4% --YAVSKITQSNY--TSNIQ--TAIKID-SQLQ---CPK---NMTTNQYT--YTT 17 O02127/31-164 88.4% 17.1% --YAVNKITQSNS--ITNIK--TAIKVD-SQFQ---CPK---NMTINQYN--YTN 18 O02131/4-143 88.4% 21.0% --HVINSITQSDS--SSGSK--IGIKVD-PQNA---CPK---DVQTTEYV--KTV 19 O44831/27-181 91.6% 14.4% --GDIILVRNDQDIFSSGNE-SVSFKIL-NSPAK--CADRAEDMLLGITNE-YNK 20 O44835/1-131 91.6% 16.2% --GDVIEVRHDQNGYSELRD-TVSFKML-TWPEQ--CTKRSVDMLLGIINP-YNT 21 O44833/4-135 83.2% 18.2% --GDVIQVKNDQEGYANDKEEKVAFKV---------CTS---TMFSSFLKQ-EPT 22 Q9U2Q3/1-148 90.5% 17.9% --SALTFLNRTEE--SEGHR--IAIKIP-LSKRS--CS----LTTEQLLH--NQY 23 Q9U2Q4/173-298 89.5% 11.2% --DNVHFLEKVHP--SENKV--MAIKII-TSNST--CG----LTTDELING-KHY 24 O18266/290-424 90.5% 19.4% --NRIFSVQKLYS--TD--L--VAFKVT-NSTAT--CPTG---DNPPTFGN-LTN 25 Q9XVJ9/41-183 91.6% 18.6% --NRVFVVEKLQA--SDDQF--VAFKTV-KSEVTGTCE-----DGRTSFTR-PT- 26 Q9U2T6/2-127 88.4% 22.5% --GTPFSVQKIIG--AGGNI--VGIKR---TQED--CSET---FSRPMFGQ-TTV 27 Q9NA50/2-127 88.4% 21.6% --GTPFSVQKIIG--AGGNI--VGIKR---TQEG--CSGT---FPRPMFGQ-TTV 28 Q9NA49/9-144 88.4% 20.6% --GKEFHVVQKTK--ESGEK--VAFKK---TNNM--CKVS---MPKPLFGN-DTV 29 O45481/1-120 86.3% 20.0% --GDTVSVDKVEK--NSQKR--VALKLP-VTQGL--CSIS---TDAPLFGS-PSA 30 O61212/9-147 91.6% 15.7% --NSVTKVKRAES--GGEGQ--TAFRVF-TEQPR--CKLS---MDELLNG---KK 31 O16208/6-143 92.6% 14.6% --NSVEKVKRNDS--GGEGL--TAFRVF-TEQPS--CRAV---LDDLRCGN-WTA 32 Q9XV53/5-137 91.6% 16.7% --NTISGVKGNES--GGVGQ--VAFRVY-TDQPA--CELN---LPRLLNG---KK 33 Q9U2Q4/5-153 91.6% 17.6% --DSIQEIKSNAS--GGEGQ--VAFKVY-TDQPS--CSLN---AQLLLNG---KR 34 O62451/3-142 89.5% 22.0% --GT-FMIERLAS--PSEFI--VAFK---RNETDNGCPLK---KFPLVLN--STK 35 Q9N522/1-138 89.5% 20.6% --GN-ITIERFEQ--SSESI--VAFK---RNETSDQCPF-------LAFN--TTE 36 Q9XV53/155-299 94.7% 18.9% -DDGLTFMNKSSA--DSGKR--LVIKMK-VDETT--CLFTTPQLL-DSFKFGTQS 37 O01701/2-132 92.6% 19.4% -RPKSLKVEKSSK--DERNI--VYFKT--ISTSEN-CE--------KSYK--DVK 38 O16904/1-147 91.6% 14.7% --DAVTTVQKLNA--SSQSR--IAFRLLSRNRT---CPN---LEASPILKEGTVN 39 O16891/17-147 91.6% 17.0% --DSVSSVKMLDE--SSGRR--VAFKRT-MDSDQ--CLIN---NDSPFFG--EST 40 Q9XTS6/1-109 85.3% 16.3% --G---QISTATS--TSETK--IAFKFL-ADNAT--CPIQEPTSLQGHYFT-NTT 41 O62353/7-157 86.3% 13.8% ---DLFPMKMESP---LINF--LDFKYN-ITFDG--------EIWNFKYNCRFIP 42 Q9NEP2/1-112 87.4% 14.0% --GQISTLQQLEA--SSGKV--MGVKVG--PTST--YS-----IDMASFR-CYPP 43 O16210/4-141 92.6% 16.5% PNTDSLGIMKITKTGEEDGT-VVGIK---AQLVSGQCP--------SLQNKIIAS 44 Q18362/42-166 89.5% 19.0% --TFTGPVTQLKK----GSK--VAFKVE-TDNDT--CPTG---INPPTFN-NNNA 45 Q9GRV4/2-131 93.7% 20.8% --GQVSTVRETDS--GGSNK--VAIKMNGTETAQ--CPLT-AEENSMKFGAETAT 46 O16726/1-132 82.1% 21.8% --GN-MSVKSSKS--------VVAFKT--RNYE---CP-----SANSSFP-EFST 47 O45342/3-135 83.2% 16.8% --G-TMNIQVLDK--STEDK--IITN----G-----CP-----RTNPLAGTGIVA 48 O16209/10-137 80.0% 22.0% --SSEGAIVALKR---PGS---VVI-----------CT-------KSVIIKPRET 49 Q9N4A0/5-137 89.5% 22.9% --SEFDGGNNIKVDLSSKEFK-VAIKT--NKIDQ--CP------SDTTPFGNYPY consensus/100% ....................................................... consensus/90% .......h..............h.hp..........C.................. consensus/80% ..st...lpp.pt....t....lshK....p.....Cs..........h....t. consensus/70% ..sp..tlpp.pt..tttth..luhKh...p.st..Cs..........ht...ph