cov pid 1 [ . . . . : . . . 80 1 Q73MI6_TREDE/15-0 100.0% 100.0% NAAIVMNANPFTLGHRYLIEKALDYCGSKSRLFVFAVETDKSFFSFNDRFMLIKKNTEDLKNVVVLPSSQFLISGATFPS 2 Q9CGB0_LACLA/14-0 98.4% 47.8% IAAVVMNANPFTLGHCYLVEQAAAEN---DFVYVFVVSTDRSLFRADERLDLVKKGLSALTNVSVVSGGDYLVSFATFPA 3 Q5FKK3_LACAC/15-0 97.8% 39.5% IAAIVMNANPFTLGHKHLVKMASEEN---DLVYVFVVANDVSLFNFDERMKLVKEGTKEFDNVKIVSGGDYMVSPATFPA 4 Q88XS9_LACPL/15-0 97.8% 42.2% VSAIVMNANPFTRGHRYLVEQAAAVS---DLVYVFVVATDASLFRTAERVKLVQQGTADLANVRIVSGQDYLVSAATFPA 5 CITC_LEUMC/136-0 98.4% 37.6% VASVVINANPFTNGHRFLIEEASRNN---ELVYVFVLNQEASLFHTDERIALVKAGVQDLSNVIVVNGGAYIISYLTFPA 6 Q9RLT7_WEIPA/14-0 98.4% 40.5% KASIVMNANPFTLGHRYLVEQASKEN---DHVYIFVVNQDVSLFTIAERFNLVKQGVVDLDNVDVINGQEYMVSYLSFSS 7 Q82YW0_ENTFA/14-0 97.8% 40.1% ASSIVMNANPFTKGHQYLVEKAAQES---PHVYVFVLSEDKSLFSKEARFAMVQKGVAHLPNVTVLSTEDYLVSSATFPT 8 Q6D420_ERWCT/15-0 98.4% 41.1% IGAIVMNANPFTLGHRYLAEHAAQSC---DWLHVFVVREDVSFFPFSERLEMVQRGVEHIHNLTVHAGSNYMISKATFPA 9 Q6LPU5_PHOPR/17-0 97.8% 37.2% IASIVMNANPFTFGHQFLAEKAASEC---DWLHLFVVKEEGSEFSYHDRFEMIRKGTQHIQNLTLHPGSKYIISRVTFPT 10 Q7VLZ3_HAEDU/14-0 97.8% 41.9% VGATVMNANPFTLGHRYLIEQALAQC---DHLHLFVVEEEASQFCYQERFALVQHGIADLSNITLHPSSQYIISRATFPD 11 CITC_HAEIN/143-0 97.8% 37.7% IGSIVMNANPFTLGHRYLIEQALQQC---DHLHLFIVGEDASQFSYTERFEMIQQGIFDLSNITLHSGSDYIISRATFPN 12 CITC_KLEPN/146-0 97.8% 39.5% IGAIVMNANPFTLGHRWLVEQAASQC---DWLHLFVVKEDASCFSYHDRFKLIEQGITGIDKVTLHPGSAYLISRATFPG 13 Q57TK3_SALET/15-0 97.8% 38.7% IGAIAMNANPFTLGHRYLVEQAAAAC---DWLHLFVVKEDASFFSYTDRWALIEQGIAGIDNVTLHSGSAYMISRATFPG 14 Q8Z8I8_SALTI/13-0 97.8% 37.7% IGCIVMNANPFTHGHRYLIQQAAAQC---DWLHLFLVKEDTSRFPYEDRLDLVLKGTTDIPRLTVHRGSEYIISRATFPC 15 Q9KTU2_VIBCH/15-0 97.8% 36.1% IGSIVMNANPFTLGHQYLIEQACEQC---DWVHLFVVKAENKDFSYADRMAMIKAGSKHLLNLTIHSGSDYIISRATFPS 16 Q890S8_CLOTE/15-0 97.8% 44.1% KTALVMNCNPFTLGHRYLIEHASKNS---KEVIVFIVEEDKSLFPFKTRYNLVKEGTKDLKNVKIVPGGEYIISSATFPT 17 Q8XL96_CLOPE/15-0 97.8% 40.9% VASIVMNCNPFTNGHKYLIEKASKEN---DVVHLFILTEDKSEFSTKDRINMVKLGTKHLKNVLIHEAGKYIISSATFPS 18 Q8K7E8_STRP3/14-0 97.8% 36.4% VAAIVINANPFTLGHQFLVEKAAREN---DWVHLFMVSEDQSLVPFSVRKMLIQEGLRHLDNIIFHETGPYLISQATFPA 19 Q8VUG8_STRMU/14-0 97.3% 36.0% TAALVINANPFTLGHQYLVEKAAAEN---ELLHLFMVSDDSSLIPFSVRKQLILAGTEHLSNICYHETGPYIISKSIFPS 20 Q8RGH6_FUSNN/14-0 97.3% 39.2% IASLIMNANPFTLGHQYLVEKASSEN---DVLHLFIVSDDSSLVPFEVRKKLVIEGTKYLKNICYHETGDYIISSATFPS consensus/100% .sshhhNsNPFT.GHpaLhp.A.t.s.....lhlFhltt-.p.h.ht.Rh.hl..s...h.pl.hh.st.ahlS...Fss consensus/90% huulVhNANPFThGHpaLlEpA.tts...chlalFhltp-.S.h.ht.Rhthl.tGhttl.Nlhhh.sttYhlS.sTFPs consensus/80% huulVMNANPFThGHpaLlEpAutps...-hlalFlVppDtS.FshppRhthlppGhtclpNlplh.uutYllStATFPs consensus/70% luuIVMNANPFTLGHpYLlEpAupps...DhlalFlVppDsShFsap-RhtLlppGspcLpNlslhsuupYlISpATFPu cov pid 81 . 1 . . . . : . 160 1 Q73MI6_TREDE/15-0 100.0% 100.0% YFLKEKS--LISKNQTQLDARIFLKYFVPLFNIKIRFLGEEPLDPSTEIYNQTL-------LNELPPQCEVKIIERKKTQ 2 Q9CGB0_LACLA/14-0 98.4% 47.8% YFIQSDE--EVMDFQTQIDARIFKNWFVEALGITTRYLGAEPFSKTTSIYNQQL-------TEVLSDVIDVKIIERKKAD 3 Q5FKK3_LACAC/15-0 97.8% 39.5% YFLKSSD--DLIDVQTAIDASVFKNKIAPALNITRRYIGKEPISRTTHFYNVSL-------AHELGPDIEVIVVKRLEK- 4 Q88XS9_LACPL/15-0 97.8% 42.2% YFLDSAA--SAIEAQTTLDARIFKQQLAPALHITTRFVGSEPTSRTTAIYNRVL-------QRELPPAVAVRVISRTTV- 5 CITC_LEUMC/136-0 98.4% 37.6% YFLKHND--SAIDYQTTIDVRLFKYKIASALGITSRYVGSEPLSHTTNLYNQKL-------ISELNPQIEVHVIQRKLAA 6 Q9RLT7_WEIPA/14-0 98.4% 40.5% YFIKNAD--DVIKYQTTLDARLFRDGIAKPLNITKRYVGTEPLSHTTAIYNETL-------QTELQPSVQLIEIDRKQFE 7 Q82YW0_ENTFA/14-0 97.8% 40.1% YFLKEKAPLEVAAIQATLDATLFKERIAPILEIQQRYVGEEPYSEVTAVYNQAM-------QQVFGQTITLTIVPRLAS- 8 Q6D420_ERWCT/15-0 98.4% 41.1% YFLKEEK--LITRAHAALDLIIFRKYIAPALGITQRFVGTEPFCPVTYQYNQDMHYWLEKDQTVSSPALNVVEIERKRQT 9 Q6LPU5_PHOPR/17-0 97.8% 37.2% YFIKDKG--VIDYCHTAVDLQLFRDHIAPYLGITHRYIGTEPQCVVTNNYNQQMQQWLI-SPLLESPKIEVIEVPRITT- 10 Q7VLZ3_HAEDU/14-0 97.8% 41.9% YFLKDSH--IVDAAYLELDLRLFRQHIAPALAITHRFIGTEPFCPVTAEYNRKMHYWLQ-QAVMEADAINVVEIERKKV- 11 CITC_HAEIN/143-0 97.8% 37.7% YFLKDQL--ITDESYFEIDLKLFRLHIAQALGITHRFVGTELNCPVTAEYNRQMHYWLM-DAEMNAPKINVIEIPRKTA- 12 CITC_KLEPN/146-0 97.8% 39.5% YFLKEQG--VVDDCHSQIDLQLFRERLAPALQITHRFVGTEPLCPLTRNYNQRMKSLLE--APGDAPPIEVVELARIEK- 13 Q57TK3_SALET/15-0 97.8% 38.7% YFLKEKG--VVDDCHCQIDLQLFREHLAPALGITHRFVGSEPFCPLTCAYNQRMHDILH-DPKRSGPVIEVVELARVEK- 14 Q8Z8I8_SALTI/13-0 97.8% 37.7% YFIKEQS--VINHCYTEIDLKIFRQYLAPALGITHRFVGTEPFCTVTAQYNLDMRFWLE-TPTLPAPPITLVEIERLCF- 15 Q9KTU2_VIBCH/15-0 97.8% 36.1% YFIKDQQ--VVNQSHTALDLSIFRHSIAPALGITHRFVGSEPICTVTRHYNQAMRRWLE-EAHDASAPIQVVEIERSQQ- 16 Q890S8_CLOTE/15-0 97.8% 44.1% YFIREED--ILVKAHAEIDAGIFGKYFGEKFNIKKRYVGEEPYCEVTNAYNQVL------KSTLPKFGIELEEIKRKEI- 17 Q8XL96_CLOPE/15-0 97.8% 40.9% YFIKEQK--NITKAHAYLDLTLFCEYISKALNIKYRYVGEEPFSNLTNEYNQYM------KEILPKHNIQVIEVKRLKE- 18 Q8K7E8_STRP3/14-0 97.8% 36.4% YFQTEDN--DVIKSQALLDTAIFLK-IAQTLQITKRYVGEEPTSRVTAIYNEIM------AEQLQQAGILLDILPRKAIN 19 Q8VUG8_STRMU/14-0 97.3% 36.0% YFQKDQA--SVIESQARIDLAIFIQ-IAKYLGIKGRYVGEEPTSLVTGIYNQIM------LQELPKKAIDCIVVPRKTY- 20 Q8RGH6_FUSNN/14-0 97.3% 39.2% YFQKDEV--AVIESQANLDIEVFTK-IAKVLNINKRYVGEEPNSLVTNIYNQTM------VKKLPENNIECVVVPRKKY- consensus/100% YF.ppt....h......lDh.lFh..hs..htIp.RalGtE..s..T..YN..h..............h.h..l.R.... consensus/90% YF.cppt...h.t..stlDhtlFhp.hu.hLtIptRalGpEP.s.hTt.YNp.h...........t..lplh.l.Rht.. consensus/80% YFlKcpt...l.cspstlDhplFpp.lA.hLsIppRalGpEPhs.sTt.YNp.h........p..tssIplh.l.Rhph. consensus/70% YFlK-ps...l.cspsplDhplF+phlA.sLsITpRaVGpEPhs.lTs.YNpth.......tph.sssIplh.ltRhph. cov pid 161 . . . ] 195 1 Q73MI6_TREDE/15-0 100.0% 100.0% -NQQIISATQVRKAFQNNSLEEVRSFLPEITYNFL 2 Q9CGB0_LACLA/14-0 98.4% 47.8% DNEEIISATAVRAAIATNQLEKIRNFVPETTFEFI 3 Q5FKK3_LACAC/15-0 97.8% 39.5% -DGEIVTATKVRQLIKDGNLKEIDKFVPESTYLFI 4 Q88XS9_LACPL/15-0 97.8% 42.2% -ANQPISARTVRQRIRSGNLTELNQLVPATTAQFI 5 CITC_LEUMC/136-0 98.4% 37.6% GDLGVISARTVREAIDKGDEAVWQKMVTETTQHFI 6 Q9RLT7_WEIPA/14-0 98.4% 40.5% -MTHVISATTVRSAIERGDEMLYQQLVPPTTKQFI 7 Q82YW0_ENTFA/14-0 97.8% 40.1% -DGELISATKVRKAMAEGDKETLKKFLPATSYQYL 8 Q6D420_ERWCT/15-0 98.4% 41.1% -SGLAISASEVRKLLKLRQYSRIQDIVPASTFEHL 9 Q6LPU5_PHOPR/17-0 97.8% 37.2% -NNNPISASTVRGLLIRGDTEHLADYLPKTTIEHL 10 Q7VLZ3_HAEDU/14-0 97.8% 41.9% -SNQAISASTVRQLFSERKWQQLLSMVPITTFNFL 11 CITC_HAEIN/143-0 97.8% 37.7% -SNHIISASTVRKHLAEKNWAQLAEFVPMTTLNYL 12 CITC_KLEPN/146-0 97.8% 39.5% -NGGPVSASRVRELYRQRNWQAVAALVPPGTLSFL 13 Q57TK3_SALET/15-0 97.8% 38.7% -NGAAISASRVRKLYSERNWSAISALVPAGTLAYL 14 Q8Z8I8_SALTI/13-0 97.8% 37.7% -QETPISASWVRKLLVKHDLTAIAPLVPDATLRYL 15 Q9KTU2_VIBCH/15-0 97.8% 36.1% -ASQPISASRVRYLLKQFGFAAIADLVPKTTYSYL 16 Q890S8_CLOTE/15-0 97.8% 44.1% -QGDFISASKVRGLIREGKLDEIINLVPSVTWEFL 17 Q8XL96_CLOPE/15-0 97.8% 40.9% -DGQAISASSVRSFLKEGNLEKVESLVPKTTFDYL 18 Q8K7E8_STRP3/14-0 97.8% 36.4% QQQDPISASTARQALKDNDWDLLAKLLPKTSLDYF 19 Q8VUG8_STRMU/14-0 97.3% 36.0% -KDGPISASTVRKALKEGNEQILRELLPSTSLNYF 20 Q8RGH6_FUSNN/14-0 97.3% 39.2% -SDNVISASTVRQIIKNGNLEDLKNLVPETTYNYF consensus/100% .....loAp.sR.hh...t...h..hls..o..ah consensus/90% .ttt.ISAopVRthhtptp.t.ltthlP.sohpah consensus/80% .ptt.ISAopVRphhtptshptltphlPtsThpal consensus/70% .sspsISAopVRphlpptshptltphVPtoThpal