cov pid 1 [ . . . . : . . . 80 1 JE0368/48-139 100.0% 100.0% NEKKAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTR--SLSDNINLPQ-GVRYIYTIDGSRKIGSMDELEEG- 2 7289863/153-244 98.9% 53.8% PTRKALRIKFYRNGDRFYPGITIPVSNER-YRSFERLFEDLTR--LLEENVKIPG-AVRTIYNLCG-KKITSLDELEDG- 3 CAB54507/206-29 100.0% 51.6% HLLKAKRLRFYRNGDQYFKGIQYALQSDR-VKSMQPLMEDLMK-TVICDSTALPH-GIRHIFTIDGAQRITSVDQFEDG- 4 AAD46769/31-118 95.7% 40.2% HPVVAKRISFYKSGDPQFGGVRVVVNPRS-FKSFDALLDNLSR------KVPLPF-GVRNISTPRGRHSITRLEELEDG- 5 7294350/207-294 94.6% 37.6% SYWKARRVVFYRNGDPFFPGVELRYRPGRDVTSLDNLLDKISP------KMDLPR-GARYVFSMDG-DRKYHLDELEDG- 6 AAF23612/12-100 95.7% 29.0% SQPVVKSVLVYRNGDPFYAGRRVVIHEKK-VSSFEVFLKEVTG------GVQAPFGAVRNIYTPRTGHRIRKLDQIQSG- 7 7301004/17-108 96.7% 29.5% LHKKALRVCFLRNGDRHFKGVNLVISRAH-FKDFPALLQGVTESLKRHVLLRSA---IAHFRRTDG-SHLTSLSCFRET- 8 Q17711/12-98 94.6% 25.0% VDFFPLRIRVFRNGDMFDHGRILVVTRKQ-FKHWIVFLDALTD------LLRTAT-AVRRLFTTQG-IPVHHFDDLETN- 9 Q9XUK0/30-115 93.5% 29.3% SSYNIRKISIYKNGDRYHRGVKFVINPRV-IKDMEPLLNQVND------RIELSH-GAKKLYTTDG-KIVNSIKELEDG- 10 AAF23612/134-22 95.7% 22.8% PLQEPCTIFLIANGDLINPASRLLIPRKT-LNQWDHVLQMVTE----KITLRSG--AVHRLYTLEG-KLVESGAELENG- 11 JE0368/175-263 95.7% 17.2% DFVRPKLVTIIRSGVKPRKAVRVLLNKKT-AHSFEQVLTDITE----AIKLETG--VVKKLYTLDG-KQVTCLHDFFGDD 12 CAB54507/335-42 95.7% 19.4% DFVFPRIIKVIRNGVKPRRISRHLLNKKT-ARSFDQVLRDLTF----VVKLDSG--AIRKLFTLSG-RPVLSLQDFFRDD 13 5326900/86-170 91.3% 25.8% MLRAPRRLVVFRNGDP-KNKHVVLLSRRI-TQSFEAFLQYLTQ------VMQCP---VAKLYATDG-RKVPSLQAVILS- 14 Q18899/2-89 94.6% 21.5% NRPKVKKIYVKKNGEDIYEKPKLFVWRQWQSPRLEQLLEDVGP----YVGMDDG---ASAIYTLEG-EEITDPDEIVDL- 15 7289863/308-396 95.7% 14.0% TVVHPRIVTLIRSGTKPRRIMRLLLNKRN-SPSFDHVLTAITQ----VVRLDTG--YVRKVFTLSG-IPVVRLSDFFGSD consensus/100% .....h.l.hhtsG.....h..h.h..t....ph..hht.l.........h..s...ht.h.t.ps...h.p.tth.... consensus/90% ....shhl.hh+sGs....h..hhl..t....ph..hhp.ls........ht.s...ht.lhs.pG...l.phpph.ts. consensus/80% ..hhspplhhh+NG-..htthphhlppcp.hpsh-.lLptlot......thp.s..hl+plaohpG.p.lhphpph.ps. consensus/70% s.hts+plhhhRNGD..htuhplhlspcp.hpsa-tlLptlop......tlphs..sl+plaThcG.c.ltplp-h.ss. cov pid 81 . ] 98 1 JE0368/48-139 100.0% 100.0% ESYVCSSDN-FFKKVEYT 2 7289863/153-244 98.9% 53.8% QSYVCSCNNENFKKVEYN 3 CAB54507/206-29 100.0% 51.6% GGYVCSSTD-AFKPVDYS 4 AAD46769/31-118 95.7% 40.2% ESYLCSHGR-KVQPVDLD 5 7294350/207-294 94.6% 37.6% AFYVVSSFK-AFKLVCRL 6 AAF23612/12-100 95.7% 29.0% GNYVAGGQE-AFKKLNYL 7 7301004/17-108 96.7% 29.5% DIVICCCKNEEIICVKYS 8 Q17711/12-98 94.6% 25.0% GEYVAVETG-PFVNVPYG 9 Q9XUK0/30-115 93.5% 29.3% KIYVAASAQ--FIPMRYG 10 AAF23612/134-22 95.7% 22.8% QFYVAVGRD-KFKKLPYG 11 JE0368/175-263 95.7% 17.2% DVFIACGPE-KFRYAQDD 12 CAB54507/335-42 95.7% 19.4% DVFVAYGGN-EKMAADDL 13 5326900/86-170 91.3% 25.8% SGAVVAAGREPFKPGNYD 14 Q18899/2-89 94.6% 21.5% GTYYVSGDE-SLMLPDAN 15 7289863/308-396 95.7% 14.0% DVFFAYGTE-RINTAEDF consensus/100% t.hhs.t.t..h...... consensus/90% t.hhs.t.p..h..h... consensus/80% t.alssstp..hh.sph. consensus/70% t.alssusp.thh.sphs