cov pid 1 [ . . . . : . . . 80 1 Q9VU48/326-424 100.0% 100.0% ALGSYRWSVYEAFTALAIRMKLNGR---VCVLKSICESAAA------PFDDRNG---LLGEVLHILLTPS--------SS 2 Q9VU48/119-217 100.0% 57.6% VLSSYRWTVYKGLEGLADRLGYQGR---ICVLKSICEAAEE------PFHYTNG---LFADLLHILLTPS--------SS 3 Q9VC80/378-475 96.0% 21.6% HHRRSRQSLYERIEKYLDKRGHHGH---HCVLRTLCETGQK-------STEHEPG-TFVGELMRAVFTLP-------EAM 4 Q9VGJ1/83-182 100.0% 45.0% YGALYRWIIYRGIEMVIENMGLPGR---SCLLRLICEHAAL------PLNHESG---LLGEIMNIVLRPS--------SS 5 Q9VU47/116-214 100.0% 28.3% PPPFRRHDFYRSIINFLTHYGFNGS---ACLLRTICEVSES------PLDDQNG---LLGSLFQILFMPT--------TS 6 Q9VC79/321-429 97.0% 21.4% QHLSSRQLLFGKIERLYKSRRLNGT---SCVLRALCESSQRQQHVLRGTNAVRPQ-SFIMEILSAIFQLP---SSDDVEE 7 Q9VS31/117-210 91.9% 28.4% YADDARLLVYTALEEYMGRRNNDRSMGRQCLLRSICENAQ--------IHHHIG---VFSEIMDIVLSPG---------- 8 Q9VC82/284-384 97.0% 25.0% PSDFTAGELYESLENMLIQYGFDE----SCLLRSVCELARH------PFKDVEN--NMLTALLTFTLTPS---------- 9 Q9VC75/110-212 99.0% 26.9% IKRRSRRAFYDEVQSLFDNMGFNGR---SCVARALCESAKFML-----PSVERG--NMLQELVRTVFSLP-------PSP 10 Q9VC77/149-248 93.9% 24.5% IKRRHRRELYGRLETMIDSMGYNGR---DCILRTLCESRQY---------FQRTKMSMVGEMLRTIFSLP----KQRIFT 11 Q9VS32/96-189 91.9% 27.5% HEDDTRLFVYAALENYMDQVSGSPGRGRHCLLRGICENAQ--------VHHHVG---IMAELLVVLLTPG---------- 12 Q9VC84/135-227 92.9% 24.0% LHDEARTWVYNAIEVGMEQLDGAYG--GVCLLRSICEISQK-------PFQNSN---IFSEIVNAVLVPT---------- 13 Q9VC76/184-279 92.9% 16.5% EAQNPHGMLFDLISIMATMFNYQPN---YCVMRTLCEARH--------LLAPPGL-TLFHDIFRIMLRYVH--------- 14 Q9VSG7/212-309 96.0% 24.5% FHGGERVLLYGVVEDFLSTFGMDGK---ACLLRTICEMHSR-------SLEKFG---VFGEMTKLFLTVT---------- 15 Q9VC81/179-271 90.9% 19.6% NGHRDRRQLFEHFDGFSKLLGIDAK---ACVLRAICDSKR--------LLLPRGY-SMIQDIVRLVFTLP---------- 16 Q9V901/55-147 90.9% 26.5% LVDEPQLLLFKFAEAYMNQLGQNGS---ACLDRLICENGQ--------VDEHSG---LYAQLLHRLLRPH---------- 17 Q9VC82/81-185 98.0% 21.5% PKDFSAGELYAFLEDTLTGYGFHE----TCLLRSVCELAQH------PFDDSHQ--HLLSDIVTFVLSPSQHE------G 18 Q9VC78/243-328 83.8% 23.5% ENRPFRRDTYELLHELIDRSGLDGR---ACVLKAYCTALAG--------DHGQG---FLFKLLKYVFTLDEH-------- 19 Q9VC85/118-205 84.8% 17.5% YPYYADPYRNAHYESFQLDLR-------SCIKRAMCELRAKLN-----AGQDQG--FLMEDLMRIVLTVP---------- consensus/100% .....t..h.t.h..h....t........Cl.+.hCp..t.................hh.thh.hhh............. consensus/90% .....t..hat.hp.h...ht........Clh+.hC-.tt.............s...hh.phhphhh..s.......... consensus/80% ..t..ch.hathhpthhtphshp.t....ClhRslCE.tt.............s...hhtclhphlhp.s.......... consensus/70% .tt..Rh.lYttl-thhpphshssp...sClLRslCE.tp.........ttpps...hht-lhphlhs.s.......... cov pid 81 . 1 . . ] 126 1 Q9VU48/326-424 100.0% 100.0% VDPLSEHSDNDYLQAERLGAAG----GDCDQVYP---RCPKSLLEH 2 Q9VU48/119-217 100.0% 57.6% VDKLSEHADNEYYYAEKMGQSG----AGCDRVFK---ECRRSLLQH 3 Q9VC80/378-475 96.0% 21.6% DNEPVAYRDSHYDKAHASK-------ADCAVLYP---ECKQSMWQA 4 Q9VGJ1/83-182 100.0% 45.0% VDQLGQSSDREYHTSEHFGKRG----GDCQAAYA--SRCKKSPMEL 5 Q9VU47/116-214 100.0% 28.3% AAEQELQHVDELYKASDAGTHG----PGCSEYVA---HCGHSALDL 6 Q9VC79/321-429 97.0% 21.4% LEELELMISPNYLEAHRQK-------GNCRQIYG---DCNHTFWLD 7 Q9VS31/117-210 91.9% 28.4% ----KADLDNDYHDAYAAGRAG----ANCLGLYS---ACPRGHNFL 8 Q9VC82/284-384 97.0% 25.0% LHEAFAPGENVYREVYEHAEQQGFLGMDCGHLYS---NCPVDFLSG 9 Q9VC75/110-212 99.0% 26.9% VAAHEPQAHHQYDRIYRRSKRSS---RDCHEIYP---GCQFSLLAL 10 Q9VC77/149-248 93.9% 24.5% RELHENADIVHYDQAYRNAHT-----DDCTQYN-----CHFSLLEL 11 Q9VS32/96-189 91.9% 27.5% ----KTRLDVAYKEALAAGQAG----IDCLARYS---DCPRGESVL 12 Q9VC84/135-227 92.9% 24.0% ----LDNVASKYLHARDAGRGG----ADCERTYS---DCNPLLWSL 13 Q9VC76/184-279 92.9% 16.5% ---PEIAHKPKYREAFTAGHSL----HKCASLYG--PHCRQSFLLL 14 Q9VSG7/212-309 96.0% 24.5% -KSPFSDLVPDYVQAQEVGEGKQ-APGECFPYFK---DCPKSIFKA 15 Q9VC81/179-271 90.9% 19.6% ---TASGVEDDYSRIMQMDA------DDCDRQFR--DSCKLNLLAW 16 Q9V901/55-147 90.9% 26.5% -----QTLDVRYLDAYRMGRHG----VDCRNAFPEAHHCILDDYLH 17 Q9VC82/81-185 98.0% 21.5% FRDDEDVYRKAYELAEQDGFLEIDGHSRCDGHQI---RMYITGVHF 18 Q9VC78/243-328 83.8% 23.5% ----DKRHMPHLREE------------NCEQIMH--SHCPLSFDSI 19 Q9VC85/118-205 84.8% 17.5% ----EEVADDKYRHRMDNQ--------DCARFYA--PSCPYNVLDF consensus/100% ...........h...............tC.........h....... consensus/90% ..........th....t.t........tC..h.....tC..s...h consensus/80% .......h.spY.pt.t.t........sCtthh....pC.hshh.h consensus/70% ....ttthpscYhpu.p.ut.......cCttha....pC.hshhth