cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 7296555_3/1-92  100.0% 100.0%    KFQSLVQAD---TDYCELLSTLK---DSLFRRWIKSVSKNSN-FMENCPVPAG-HYYLKGWHVEM--GLVPSYLLSGDYL    
 2 7296555_4/1-92  100.0%  39.1%    PYQSVYQHD---MNYCALIKGSQ---ESIYRRWFTSMLKVGN-FATSCPIREG-YYYLHGWTLDA--NNVPSFLYLGDYR    
 3 7296555_2/1-92  100.0%  37.0%    SYQRLFAHI---LDTCGVVSSVR---GNLFKSWFDSMLKHGN-FMVNCPVPAG-HYFLRDWKLDS--HLVPHYMLPGDYC    
 4 7296555_5/1-92  100.0%  38.0%    SFQSLFSTS---IDVCNIVNAAK---INLFKKWYKNLLKYGN-FLRQCPLNAS-HYYLRDWQFGE--GLVPPFITSGSYR    
 5 7296555_6/1-92  100.0%  39.1%    NFQSMFSQK---SDVCAVTSSVK---NSLFKSWFKDMSKNSN-FMYNCPVEVG-HYYMHDWRMGS--SMTHKFLIPGEYR    
 6 7303569/53-145  100.0%  29.0%    RYQTLFSYD---MDTCKTLRELLQ--SSLMKVWLRNVFKYGN-LADRCPIQPA-SYDVRNFQLEN--HSIPGYLPAGFYR    
 7 7295479/1-93     98.9%  19.1%    NYFDLIRMT--NKDLCKLLDSLRN--ITVEEIPGESLLPST--FVVSCPLVPG-FYFVENGVIDS--KLVPFRIPDGRYM    
 8 7296558/55-147   98.9%  13.8%    NYSTLINRT---LNFCKLMKQRNSD-PLVRAIYEDLLKHGT--LFKECPIRSG-TYSLTNYNVDE--EMLPSFLPEAKFR    
 9 7296559/72-164  100.0%  11.8%    YYNTNLNTT---LNVCRILGFANK--SPVGRFVHGFIREFGN-IVETCPIAKG-SYFINKFWWPE--DPTTAMLPELEFE    
10 7302695/1-92     97.8%  21.3%    PDFVLLNVT---TDGCQLLANRNQ--VPLMRLGRNIMERFSN-FPKQCPFKPNFTYYIRGFRLDL--NLVPAV--DMETP    
11 7302694/58-147   95.7%  15.8%    DDFTLFNLS--GIDGCSLLSNKNQ--IAFIQLGRKHMDRFSN-IPKRCPWPKDVNYYIRGFR------SDMATMPAFNFE    
12 7296335/61-154  100.0%  12.8%    PVQQLFKIR---VDGCHLIEFRSK--SRILNAVLHKLLQSGN-YPDACPLLANVNYTSTRFALNP--DHFPAYMPDMKFN    
13 7303460/55-146   97.8%  19.1%    VITQIFDIT---FDVCKVLRERKR--KILIDLLVNTLAKNSNAKAWRCPFPKG-KFESRNISVT----DLPPMLTESEFF    
14 7299295/1-92     97.8%  19.1%    AFVQLFELR--RINFCEFLSEYNT--NPMMEMMFKKNVKLN--DIIVCPVRVG-NYSLLNSDIAE--NIHADGVQNGTYR    
15 7296254/1-94     98.9%  14.7%    KPRTIYNAS---TKLCDLQNVFNSV-PLFKPAKDNMLKQSN--YTLSCPLVKG-TYVMINMRVSPK-NPLLSLLYQPKQT    
16 7290990/1-97    100.0%  12.5%    LPRTLYNGT---TKTCDFWKYIRHVSAWNNVAKLILSKGASN-MSLACPLKTG-VYVMNRIQVPPE-TALLKFMYHPNTL    
17 7293905/1-96    100.0%  15.6%    FKRMVMDVPQ--TSICECFKKFYVQFVQPSLKTGETTNFPVV-DDDFCPVPEG-EFYVKNVILNT--QDWPSQVPRGIVK    
18 gi|7291792|gb|A  95.7%  18.3%    YKPFLFDYT---FDACEFMRRR---NQPVAKIIWYMIRNVST-INHTCPYEG--LQMLSDFHK----VDIPVPLPSGDYL    
19 gi|7301726|gb|A  97.8%  16.1%    YKPWLYSVS---FDGCQFIRRR---NNALIRIVWELFKEYST-INHTCPYVG--LQQVKNFYLRS--EKLPTPIPTGEYL    
20 7291640/1-92     96.7%  17.9%    YKPFLYNICQ--SDVCEYLEKR---NHPFINIILSSFGNRTN--VNKCPIPP--EIVLEHFRFPVK-VLDMMPLPFGDYG    
21 gi|7303581|gb|A 100.0%  17.0%    YRPFMYYIL---FDFCKLMASRNY-DLSFERFIFDAIRKQSN-FNQTCPWKEN-HMTVEKFALDF--TKISMPVPAGTYR    
22 7291858/1-93     98.9%  14.9%    RVLYNFDFK---VDSCKFMRDRK---HVIANWVYQTFGPYSN-LNHTCPYDH--DIVLDKLPVQHLNKLVQSIIPDGRYM    
23 gi|7303357|gb|A  98.9%  16.1%    FQPFLVDVV---INMCDALSRRSF--IPYGLIILKIARTFSN-FNHSCPYRGH-LMARGAYLNE---SYLPNVFPLGFYK    
24 7299753/59-149   97.8%  11.8%    DYEKVLTFE---MQLCDFMKSYYK--DIFYERIKEYSNAP---HPSSCPLPKE-RYVLEDYPFNV--KLLKKLMSPGFYR    
25 7290814/58-146   96.7%  16.3%    RGSMVMAVK---KPFCQFIKED----EDSYPSIQKASNLP---DQDTCPFPKG-KYTIDNYELET--NFLPDNAPKGDYL    
   consensus/100%                   .....h.........Cth.t...........................CPh.........t....................    
   consensus/90%                    ....hhth....hphCthht.h..........h.t.....s.....tCPh.....h.htth.h......h...h....h.    
   consensus/80%                    .h..lhphp...hshCphhpth......hhthhhp.h.t.s..h..pCPh..t..hhhpph.ht...t.h...h..spah    
   consensus/70%                    .h..lhshp...hshCphhpphp....shhphhhp.htp.ss.hsppCPh.ts.pahlpsatht...p.lsshh.tupah    

                      cov    pid 81          .         1 ] 102
 1 7296555_3/1-92  100.0% 100.0%    LSALVYYGKYRSKKQMFLVRCM    
 2 7296555_4/1-92  100.0%  39.1%    ISGSFYYGRFKKHLYNPLLECS    
 3 7296555_2/1-92  100.0%  37.0%    ITAHFFFDLTSEVPMLKIVCVL    
 4 7296555_5/1-92  100.0%  38.0%    LETYNFFGKYKGKDEDFIMSSN    
 5 7296555_6/1-92  100.0%  39.1%    GKLTFFYGKYGTKLFEEALSLT    
 6 7303569/53-145  100.0%  29.0%    LHDTNYYGKPKGRQRRPVATFI    
 7 7295479/1-93     98.9%  19.1%    VLFELIQVYEEVMKLISCRIKF    
 8 7296558/55-147   98.9%  13.8%    FGMKISTDKGGMIVRSTIFGRI    
 9 7296559/72-164  100.0%  11.8%    IIWQAMHVDASKKRTLIMNDHF    
10 7302695/1-92     97.8%  21.3%    VQIEFSHQNKQQGIRWITGYLM    
11 7302694/58-147   95.7%  15.8%    TDMNLWFELVVNQHKLIRGFIQ    
12 7296335/61-154  100.0%  12.8%    TKLVFQLSRNMGLIRASVDAEV    
13 7303460/55-146   97.8%  19.1%    VNLDFFIPKVAIAMNVTLHGHL    
14 7299295/1-92     97.8%  19.1%    FFAEIV-EEIGEIAKVFALQVT    
15 7296254/1-94     98.9%  14.7%    FSVSGGLFEELSRGRRLRALST    
16 7290990/1-97    100.0%  12.5%    YTLEGTVYSLNPKDKVTRKALC    
17 7293905/1-96    100.0%  15.6%    AIITFFSGGKNVGGLIVEVKIE    
18 gi|7291792|gb|A  95.7%  18.3%    LMVDWLFDGKTQFATNVYFTFI    
19 gi|7301726|gb|A  97.8%  16.1%    LMIDWVFNKKPQAATNVYFTFV    
20 7291640/1-92     96.7%  17.9%    LFTTFTFHRSELAQVKVYFTLT    
21 gi|7303581|gb|A 100.0%  17.0%    LGFTFYAYGIARTLTQVFFEKI    
22 7291858/1-93     98.9%  14.9%    MNSTWMVAGIPRTDVILYFTKS    
23 gi|7303357|gb|A  98.9%  16.1%    FNITIMENYITPPSAHVGGIIW    
24 7299753/59-149   97.8%  11.8%    IKYTLKNEETKILSYVLDLELE    
25 7290814/58-146   96.7%  16.3%    LQLSLLDREVPVAGLVATVTLT    
   consensus/100%                   h.....................    
   consensus/90%                    h.h.h.......h....hh...    
   consensus/80%                    h.hphh..th..h.h.hhhth.    
   consensus/70%                    hthphhhttht.h.hhhhhthh