cov pid 1 [ . . . . : . . . 80 1 Q9V6I7/74-144 100.0% 100.0% GFAWVPSS-------SGGVPP-NAVRSGTTRTGEPLYVGRGHHAGSLTVGK-VHPSHGCLYIPFGGQEVRI-NTYEVLIK 2 Q9V6I8/175-245 100.0% 63.4% GYGWVHDS-------HGNVPG-NAVLCGRTSDGEPLFIGRAHHHGSLTPGK-IHQSHHCLYIPFDGEEVRI-DHYEVLVK 3 Q9V6I8/34-104 100.0% 64.8% HFSWIPSS-------GGSVPP-HAIQVGQTGEGEPLYVGRGYFQGSLTPGK-VHPSHQCLYIPYGGQEHRL-EAYEVLVQ 4 Q9V6I7/2-73 100.0% 43.1% DNTWVHSS------PYSPLPP-YAVIGGHDSDRTPIYVGRSFHEGENLPAK-VVPSKGCAYVAYGGAEHTK-THYEVLVG 5 Q9V6I7/146-216 100.0% 40.8% HDVWVPAS-------PSYTPP-GAVIAGHDSDRTPIYAGRAMHEGEMLPAK-VVPSKGTAYVCFGGYEFQK-PSYEVLTG 6 Q9VBG7/233-303 100.0% 60.6% NYEWLPAE-------NGEVPP-GAVKVGQNVDGETLYAGRGYHAGSLTVGK-VHPSHGCLYIPYDSEEVKI-FAYEVLSR 7 Q9V6I7/665-735 100.0% 56.3% KYHWVPSY-------GGNVPP-GAVVAGTTPGGAPLYIGRGHYCGSLTPGV-IETYNRCLQIPFGGQEIRL-SNYEVLVR 8 Q9V6I8/105-174 98.6% 41.4% -ETWIASS-------GRGIVP-GTVVGGHDADGDQIYVGRAYHEGDLLPAK-VIPNKGCAYVPYGGGEVVK-HDYELLAG 9 Q9W2M4/156-225 98.6% 45.1% PGCWVPAA-------NGEVPP-NALEGGFD-SSEQLYIARARHEGDLIPGK-LHPSHGVTYVAWGGGEHGH-AEYEVLCA 10 Q9V6I7/592-663 100.0% 33.3% YDVWVSAE------PGYYYSP-DAVIGGHDSNMEQLLVCRAYYRGVHVPGK-AIPSQGCGYIAHGGREIIE-PSYQMLVG 11 Q9VBG7/162-232 100.0% 31.0% VFLLAASS-------NGAIPQ-AAVVAGHDSDGDTIFIGRAFYCNDMLPAK-IIPNKGKAYVAYANQEVEL-ENYEVLSG 12 Q9V6I7/344-414 100.0% 38.0% NLVWIKCY-------DHVIPE-NAVLCGRTSLDQPVYIGRGHYEGHLIIGK-ISSVHRALFIAFRGAERRL-DSYEILVE 13 Q9V8D5/180-250 100.0% 49.3% DYKWVPGQ-------HGTYPR-DALNTGYSELGEVTYTGRGLYQGILRLGK-VHPSHKVMYIPHHGQEVSV-NTYEVLVV 14 Q9W2M4/226-296 100.0% 49.3% GGQWLPVD-------AGNIPP-NALPAGETAEGEPLFIGRATHDGTITVGK-VQPSHGCCYIPYGGEELAY-KEFEIYVT 15 Q9V6I7/217-285 97.2% 41.4% GYVWMNCG--------HSIPP-NAVTTGRARNGELLYYGRGHYQGSLTPGL-ISASQRCLYIPYGAYKWVQ-SSAYSSLP 16 Q9V8D5/98-177 100.0% 23.8% AMDWVPIDLDRDSLPDAHLPPEGAVQCGTNEDGLPTYVARGYYHDDLLPAP-YVPEKKAAFGSHSCSARTLTDDVEILVL 17 Q9VVM2/25-96 100.0% 25.0% EHVWKAGN------LSYVIPY-NAVVGGFDPYGFTTYVGRVKYSNSILPAR-VVAETGTAYFNTETTSSKL-LVYDILVA 18 Q9VVM2/100-172 100.0% 28.8% NYVWVRSF-------DGFYEK-GAVAVGTTVKNERVFCCRAKTDGGILIGTLLLSSQKVCIIKHESLALRKFDKYEVLVA 19 Q9VVM3/46-117 100.0% 25.0% EDKWVYLD------KTLDLPE-EAILGGVDPDGYYTYVGRVTYSSNILPAR-VVPELGKATYNTDTLGNQA-TTYEVLVS 20 Q9VVM3/121-192 100.0% 25.0% GYHWIRSF-------DGFREK-NAVSVGTNALSERVFICRVRCDESIFIGT-LYLSKRMCIVKYDNFPLRQFDKYEILVR consensus/100% ...hh.............h....sl.sG.s.....hhhsRshhtt..h.u..h....thh.h.hts........h..... consensus/90% ...Wh.s.........h.hs..tAl.sG.s..t..hahsRshapsthh.uh.l.sppthhhhsats.th....ta-lLs. consensus/80% t.hWl.st.......st.hP..sAl.sGps.tsp.lahuRuhapuslhsup.lhssptshalsass.phth.tpYElLst consensus/70% thhWlsup.......su.lP..sAVhsGpsspup.lYlGRuhapGslhsu+.lhss+tshYlsasutEhph.ssYElLlt cov pid 81 ] 81 1 Q9V6I7/74-144 100.0% 100.0% Q 2 Q9V6I8/175-245 100.0% 63.4% G 3 Q9V6I8/34-104 100.0% 64.8% P 4 Q9V6I7/2-73 100.0% 43.1% Q 5 Q9V6I7/146-216 100.0% 40.8% Y 6 Q9VBG7/233-303 100.0% 60.6% R 7 Q9V6I7/665-735 100.0% 56.3% S 8 Q9V6I8/105-174 98.6% 41.4% Y 9 Q9W2M4/156-225 98.6% 45.1% G 10 Q9V6I7/592-663 100.0% 33.3% K 11 Q9VBG7/162-232 100.0% 31.0% F 12 Q9V6I7/344-414 100.0% 38.0% E 13 Q9V8D5/180-250 100.0% 49.3% T 14 Q9W2M4/226-296 100.0% 49.3% N 15 Q9V6I7/217-285 97.2% 41.4% - 16 Q9V8D5/98-177 100.0% 23.8% N 17 Q9VVM2/25-96 100.0% 25.0% E 18 Q9VVM2/100-172 100.0% 28.8% Q 19 Q9VVM3/46-117 100.0% 25.0% N 20 Q9VVM3/121-192 100.0% 25.0% E consensus/100% . consensus/90% . consensus/80% . consensus/70% t