cov pid 1 [ . . . . : . . . 80 1 Q9UNA2 100.0% 100.0% TLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLAAVTED---KYEILQSVDDAAIVIKNTKEPP 2 Q91550 100.0% 84.3% TLRGVMRVGLVAKGLLLKGDLDLELVLLCRDKPTISLLKRVADNLVLQFETVSED---KYEVIQNIREALIVVKSTKEPP 3 AAF59924 99.6% 68.6% TLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEE---KYQVEQCINEASIIIRNTKEPT 4 O88532 100.0% 58.0% ALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPE---KYDIKCAVSEAAIILNSCVEPK 5 Q9UPR6 99.2% 55.7% VLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTED---EYEVSSDP-EANIVISSCEEPR 6 Q9VUY6 98.0% 49.6% ILKGVMRVGYLAKGLLLHGDNAVELVVLCAEKPTSGLLQRVANVLPDKLKEVAGDTQVNYRVEVNAEEAALIVLDES--- 7 Q12905 93.7% 25.3% QIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPS------------EVLT------MLT 8 Q9VG73 96.1% 23.7% QLEEVRQVGSFKKGTILTGNNVADVVVILKTLPTKEAVDALAKKVEADLKASMKT------------EVLTKGDQHTVQI 9 O62349 93.7% 17.0% GIATISHVGSFVTDTTTHSSDKSDVVVQLSTLPSYETVAELGRKVVENMKIADPK------------ETGEP------LQ 10 AAF60905 87.1% 26.7% TVLGCSRVGIIAKGTFIKGDRCAEVVLTCTPVPTSGLVEQIRRLFGESTVR----------------------------- consensus/100% .l.th.plG.hhpshhhpsp...plsl.ht.hPo.thlttltp.h..ph............................... consensus/90% .lttl.pVG.htKGhhhpus.shclVlhhp.hPo.thlttltp.ls.phth...p............-s........... consensus/80% tlpsVh+VG.hsKGhhl+Gc.sh-lVlhhpphPT.thlppluppls.phth.s.p............Es.h......... consensus/70% sLcGVhRVGhlAKGhll+GDpss-LVllCpphPTpsLlpplucplstplpths.c............Eshhhh.pp.... cov pid 81 . 1 . . . . : . 160 1 Q9UNA2 100.0% 100.0% LSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLK-----SCVIVIRVLRDLCTR 2 Q91550 100.0% 84.3% LTLNIRLTSPLVREEMEKLSAGETLTVSDPPDVLDRHKCLAALASLRHAKWFQARANGLK-----SCVIVIRVLRDLCTR 3 AAF59924 99.6% 68.6% LTLKVILHSPLIRDELEKK-DGENVMMKDPPDLLDRQKCLNALASLRHAKWFQARANGLK-----SCVIVLRILRDLCNR 4 O88532 100.0% 58.0% MQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQ-----SCVIIIRILRDLCQR 5 Q9UPR6 99.2% 55.7% MQVTISVTSPLMREDPSTDPGVEE-PQADAGDVLSPKKCLESLAALRHARWFQARASGLQ-----PCVIVIRVLRDLCRR 6 Q9VUY6 98.0% 49.6% VSVKITLTSPLLRDANPGEAATTDEGEGDS-EFLPREPCLRALADLRHAKWFQARATGLQ-----SCVMVIRILRDLCQR 7 Q12905 93.7% 25.3% NETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQS------TVKVLIRLLKDLRIR 8 Q9VG73 96.1% 23.7% HERGFDIANVHAKVRILIATLPQNLRKLEPEIHLDHKLMQSHLAAIRHTRWFEENAHHS------SIKVLIRILKDLTRR 9 O62349 93.7% 17.0% MEYGCLITSHNCQVRLLITIIPEESTKLEPLLHLDSKQMMINFFSTRHITWFSQISSELPPAFIQEWQALVRVLKDTRSR 10 AAF60905 87.1% 26.7% --AGLFFLPEIWG---FTAVVRKDDDSIVTGCAADKDLCIYALASIRNTKWYDSHCQYLN-----SCQSVIRLLRDLRNK consensus/100% ..hth.h.s..ht....h.....p.....s..hhs.p.h..thhshRphpWapt.sp.........h..llRlL+Dhp.+ consensus/90% .phth.lts..hp.t..h...spp....-s..hLs.p.h..sLAulRHs+WFptpupt.......sh.hllRlL+DLppR consensus/80% hphsh.lsSshhp.c..ht.ssps...h-s..hLDpphhhtuLAulRHs+WFptpAstL......oshhlIRlL+DLppR consensus/70% hphslploSslh+.c..ttsssps.thhDP.phLD+chCltALAulRHA+WFpu+AstLp.....SChllIRlLRDLspR cov pid 161 . . . 2 . . . . 240 1 Q9UNA2 100.0% 100.0% VPTWGPLRGWPLELLCEKSIG--TANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQS 2 Q91550 100.0% 84.3% VPTWEPLRGWPLELLCEKAIG--TANRPMGAGEALRRVLECLSSGILMPDGSGLYDPCEKDASDALEHLERQQREDITQS 3 AAF59924 99.6% 68.6% VPTWAPLKGWPLELICEKSIG--TCNRPLGXGEALRRVMECLASGILLPGGPGLHDPCERDPTDALSYMTTQQKEDITHS 4 O88532 100.0% 58.0% VPTWSDFPSWAMELLVEKAIS--SASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSS 5 Q9UPR6 99.2% 55.7% VPTWGALPAWAMELLVEKAVS--SAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTAS 6 Q9VUY6 98.0% 49.6% VSSWQSLPQWSLELLVEKVIS--SAGFPISPGDCMRRIMEALSSGFLIN-GPGLLDPCEKDPTDALLELTKQEREDLTVS 7 Q12905 93.7% 25.3% FPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYT 8 Q9VG73 96.1% 23.7% FDAFSPLSAWMLDLIAHLAIMNNPSRQALPINLAFRRVFQLLSAGLFLPGSAGITDPTEPGHIRVHTAMTLEQQDVCCYT 9 O62349 93.7% 17.0% YSDFQPLSIWTIQYLAFYCLANGPNRQKACLGTAFRRFFEIIAAGIFLPKSPCLIDPVS-ANYRIGFDLTLPQMDTVCMG 10 AAF60905 87.1% 26.7% YPEVACLDDYKMELIVSNIID--SSPMSLGLSDAFKRIVEALASGYLYS--AILSDPCETSRPNVLDALTDEQKHSLTAL consensus/100% hsthtsh..a.hphls...l...ss....s.s.sh+RhhphlusGhhh...shl.DPsp.t..phh..hp..p.c.hs.. consensus/90% hssatsL..W.h-Llsphsl...sst.shs.s.AhRRhhphluuGhhhs.ussl.DPsE.s..csh..hs.ppp-sls.s consensus/80% hssatsL.sW.h-Llschsls..ssttshu.upAhRRlhEhluuGhhhstusGlhDPCEps.hcsht.hThpQp-sls.o consensus/70% hPsatsLssWslELLscpuIu..ouspPhu.G-AhRRlhEsLuoGlllssusGLhDPCEpsshcsltthThpQ+-slTho cov pid 241 : . ] 267 1 Q9UNA2 100.0% 100.0% AQHALRLAAFG--QLHKVLGMDPLPSK 2 Q91550 100.0% 84.3% AQHALRLAAFG--QLHKVLGMDPLPSK 3 AAF59924 99.6% 68.6% AQHALRLSAFG--QIYKVLEMDPLPSS 4 O88532 100.0% 58.0% AQKALRLLAFR--QIHKVLGMDPLPQM 5 Q9UPR6 99.2% 55.7% AQHALRMLAFR--QTHKVLGMDLLPPR 6 Q9VUY6 98.0% 49.6% AQLFLRYIAFR--QIYKVLGMEPLPAM 7 Q12905 93.7% 25.3% AQTLVRILSHG--GFRKILGQEGDASY 8 Q9VG73 96.1% 23.7% SQTLLRVLAHG--GYKHILGLEGNTSV 9 O62349 93.7% 17.0% AQTLVRIFATGNDGYRAILGTHGTAAD 10 AAF60905 87.1% 26.7% AQNFVRQIAFN--QIHEILGIDRLQDT consensus/100% uQ.hlR..uht..thhtlLt.c..... consensus/90% AQphlRhhAat..thhclLGh-..ss. consensus/80% AQphlRhhAat..th++lLGh-shssh consensus/70% AQphLRlhAFs..Qh+KlLGh-sLsuh