cov pid 1 [ . . . . : . . . 80 1 167879.CPS_2223_from_171_to_27 100.0% 100.0% QNDDFLYRGQ-SKSWPLQTSFHR--TGYADL--VSYLD-------KEMKEFEHHINSISSHPYN---------------- 2 114615.BRADO3625_from_150_to_2 100.0% 40.4% DPARYVYRGQESNTWRLRTFFHR--SGRSDL--MRFIR-------SDINQLHAHLSSLTEHHFN---------------- 3 292415.Tbd_2466_from_34_to_153 99.0% 28.1% RASGYLFRGHGDADYPLQTSLERFFARPLSL--ADYYR-------LAL-VAKPRLEAFTGRRWE---------------- 4 338966.Ppro_2922_from_28_to_12 86.1% 26.1% FRSRFAFRGLSNANYRLETSLIRLGGDYDY-------------------VERHLLRNFRKYAH----------------- 5 338966.Ppro_2571_from_30_to_12 86.1% 25.2% FRSRVAFRGLSDSSYRLETTLMRMGGPFAE-------------------LERHMLRNFKKYAH----------------- 6 338963.Pcar_0661_from_28_to_12 86.1% 27.9% FRSRFAFRGLSDASYSLKTTLMRLGGNYAD-------------------LERHLMRNFKKYAH----------------- 7 319795.Dgeo_0510_from_28_to_12 86.1% 27.0% FRSPFVFRGQSRAEAKLTTTLQRLSGETRE-------------------IERHLLRNFRKYAY----------------- 8 246197.MXAN_1974_from_28_to_12 87.1% 25.5% HRSTFVFRGMPQVTNDLSTALNRK-GLFVR-------------------KEKDLLRAFRKYAR----------------- 9 234267.Acid_0172_from_30_to_13 93.1% 25.2% PYSNWAFRGERDERWPLYSSLSRYLMNFGVD--KRAW----------PEQEARILRVFKRKAH----------------- 10 243090.RB4201_from_41_to_157 100.0% 27.4% NKPAYIFRGQADADWLVDSSLDRLEKRFPTK--PNRYGSIPQSFNCPPVSRERHLTAFRQAIRG---------------- 11 295405.BF2854_from_245_to_337 79.2% 23.7% MDYHIFYRGQSDKSFGLIPSIYRE----------KFLIQ--------NENR--IFRDIIAQSP----------------- 12 318167.Sfri_2606_from_23_to_13 89.1% 19.2% DDHTLFYRGHASDIYTPFPTIFRNQNDD--PKKSRYIE---------SEGE--LFHNLVTQCP----------------- 13 210007.SMU.804_from_37_to_141 91.1% 18.4% EGETLFYRGVQPYYKGKGTEYHENFNKD--VIIPKLYRD--------SLNEKEIIEAALDKYP----------------- 14 205921.SAK_1940_from_28_to_122 85.1% 23.6% NVEHLYYRGESSFYPLRLPTLYRNKRLT--LDGSSYYYQ--------QL----FIELGKGTYQ----------------- 15 205922.Pfl_2429_from_33_to_127 79.2% 21.6% PTGPRCYRGQSVSSWKVKPSVMRELRS--------------------DAERQ-ILSELLVEAP----------------- 16 216596.RL1933_from_207_to_311 88.1% 20.5% ADEEIFYRGHSDRRYKLIPSLFRKNDGG------DWRYL--------RKEET-IVRELLTAQA----------------- 17 267377.MMP0423_from_201_to_305 89.1% 27.6% KKDILVYRGQKNSKWGLCPSVFRKKDD-----FEDRLMY--------PKCEHEFYKSVLEHNL----------------- 18 351745.Sputw3181_2913_from_17_ 84.2% 23.2% KNEIYWFRGQADATHKLLPSVFRPR--------QDGSYY--------DEAK--LLKEFVRQHP----------------- 19 319224.Sputcn32_2997_from_29_t 79.2% 20.0% NSKKWWFRGQSNARHNLVPSLFRP---------IDGKYY--------DENM--LIDEFVRMHP----------------- 20 325240.Sbal_1265_from_26_to_12 87.1% 20.7% GNQGAWFRGHSDSSFELLPSVFRRTGKN-----GDGPYY--------NENE--LLREFLRRHP----------------- 21 228405.HNE_3339_from_26_to_125 85.1% 21.7% ASTGAFFRGSSDGSLDLVPSLYRR----------ANAVD--------LERE--MVRAFINNSS----------------- 22 318161.Sden_1048_from_20_to_11 83.2% 18.4% LGKELWFRGVTNKNYSLIPGSVRF----------DLNGW--------KEVS--AVLDFMASYQ----------------- 23 282459.SAS0037_from_20_to_113 81.2% 23.0% DNSLWLFRGHSNLNWSLVPKAGRA---------PYDKY---------DDEET--FYAWKRQAM----------------- 24 386415.NT01CX_1348_from_21_to_ 82.2% 21.2% NDDKWIFRGQGKASWKLVPKAGRM---------PYNKS---------NDEKF--FKEWKRGAT----------------- 25 218491.ECA2892_from_50_to_145 84.2% 23.2% NGFGVVYRGQADCHWKLLPKAGRQ---------EYLLP---------DDRDLGVFKDWLDRAI----------------- 26 316055.RPE_1558_from_35_to_135 82.2% 21.2% SDSSWVFRGLGDVDFELIPGIGRG---------KYNPA---------NERAL--LEVFERRAA----------------- 27 402881.Plav_0332_from_11_to_11 87.1% 24.8% SHTRWIFRGCASRLHKCIPSLGRL---------PNYDL---------TDEIR-VFRAFQKSAG----------------- 28 392499.Swit_3474_from_25_to_12 83.2% 23.0% DRDQGIFRGHAGAKWRLVPSAFRE---------GQYGI---------TDHVK-LAK-WKRFAG----------------- 29 351605.Gura_1407_from_33_to_13 85.1% 18.4% SDGHVVFRGQRRN-LPLIPSVGRD---------KKRRLW--------SYVEKEVFEEFKREAL----------------- 30 269482.Bcep1808_5844_from_28_t 85.1% 22.1% GTPSRLFRGQCNAGWPLVPSIARQ---------CAS-----------PDLEARMLDEFTRRAL----------------- 31 431943.CKL_0041_from_33_to_175 98.0% 20.0% KRGRFIYRGQRDDTWPLVPSILRINKKINHKIHIKCEEQ--------VHNELMILNYFVDQCDSIGISIINDSLEFRKRY 32 399742.Ent638_1361_from_35_to_ 91.1% 20.0% TKNIYLWRGQGNVAWPIHSSAYRRLEKD-----KTFPPS--------EMTMRDYERELLLNAKHQG-------------- 33 295405.BF4286_from_44_to_146 88.1% 17.4% VPGKFIFRGVSDEKYHVLSSAGRRL--------KELNKQ--------NDFIR-YHVNLVSNARKMG-------------- 34 282458.SAR1884_from_104_to_211 86.1% 16.4% TSTTNYYRGQAN-DWPMKAGLLRNDI---------------------IDDLKKEFENIYEDMAYKYP------------- 35 431943.CKL_3838_from_19_to_108 83.2% 18.7% YKNNYYFRGQANCQWEIAPSLFRKK-----------------------DCLPLECEKIQEEMK----------------- 36 400668.Mmwyl1_1746_from_116_to 99.0% 19.8% PNLKLLFRGQNTEYYVDRGAKEKELIFADANALEPSLIPSAVRRGILMEDIMPLWNSMLQSYLGS--------------- 37 269796.Rru_A0303_from_18_to_13 95.0% 17.1% SYRDCLFRGQVEEYNVGHDEIIFKTSFYRNKCHPETMVK-------WSFYAERIFRRFFSIGMD---------------- 38 435590.BVU_2115_from_47_to_160 94.1% 16.7% KDCILFYRGQKEDYKNSKSKSTFYPTIYR----GEPLS---------ADELAFRWRKLKSASK----------------- consensus/100% .....haRG.........s......................................h...................... consensus/90% ....hhaRG.tp..h.h.sth.+...............................hp.h.t.................... consensus/80% .ttthhaRG.tst.h.hhsshhR..............................hhpthhp.h.................. consensus/70% tppthhaRGpsstpa.lhsshhR..........................t...hhcthhptth................. cov pid 81 . 1 . . . . : . 160 1 167879.CPS_2223_from_171_to_27 100.0% 100.0% ------------VNNDNSLGALLN-----------------LAQHHGYPTP-LLDWTKSPYVAAFFAFEN---------- 2 114615.BRADO3625_from_150_to_2 100.0% 40.4% ------------LKDELEYAAFCN-----------------LVQHHGYPTP-LLDWTRSPFIAAYFAFRR---------R 3 292415.Tbd_2466_from_34_to_153 99.0% 28.1% ------------LPSQEAYAAWLEGAAGSTLDDYPAYDYLAYLRHHGFPSP-LLDWTQSPYVAAFFAFRY---------- 4 338966.Ppro_2922_from_28_to_12 86.1% 26.1% ------------RNVVE---RDSL------------WHWLSVAQHFGLPTR-ILDWTYSPFVAMHFATAS---------I 5 338966.Ppro_2571_from_30_to_12 86.1% 25.2% ------------RNVVE---ADSL------------WHWLSVAQHYGLPTR-VMDWTYSPFVAMHFATGD---------L 6 338963.Pcar_0661_from_28_to_12 86.1% 27.9% ------------RSAVE---SDAF------------WNWMAVAQHYGLPTR-MLDWTYSPLVAMHFATAN---------I 7 319795.Dgeo_0510_from_28_to_12 86.1% 27.0% ------------RNGMD---RDLP------------WYWLAVGQHHGLPTR-LLDWTTSPLVALHFATAE---------E 8 246197.MXAN_1974_from_28_to_12 87.1% 25.5% ------------SYSPQP--VESV------------WDWLALAQHHGLPTR-MLDWTFSPYVALHFLTEN---------P 9 234267.Acid_0172_from_30_to_13 93.1% 25.2% ------------QFLTQPPEPQDD------------FQWLGLMQHHGAPTR-LIDFTWSPYVAAFFA------------L 10 243090.RB4201_from_41_to_157 100.0% 27.4% ------------RRGSNPPQLDDD------------ESW-ALAQHHGLATP-MLDWTLLPFAALFFAFED---------E 11 295405.BF2854_from_245_to_337 79.2% 23.7% -----------ADFKG-C---TST------------FEKLVKMQHYSLPTR-LLDITTNPLVALYFAC--------ENDA 12 318167.Sfri_2606_from_23_to_13 89.1% 19.2% -----------EEFKD-C---TST------------FDFLVKMQHYGLPTR-LLDITSNPLVALYFACCTLIP---ESTK 13 210007.SMU.804_from_37_to_141 91.1% 18.4% -----------NEFSN-I---NSN------------IEVLLKLQHYEIPTR-LLDITSNPFIATYFSLDNV--------- 14 205921.SAK_1940_from_28_to_122 85.1% 23.6% -----------NSVEL-S---QS----------------IAEFQHYGAITR-YLDVTSNPLVALYFAVEN---------- 15 205922.Pfl_2429_from_33_to_127 79.2% 21.6% -----------NEFGS-D---KSM------------FDKLVRAQHYSLPTR-LLDVTLNPLVGLYFACEEE-----KFQS 16 216596.RL1933_from_207_to_311 88.1% 20.5% -----------TAFSS-D---EYM------------LDKLVRMQHYGLPTR-LLDVTSNPLVALYFCCADA-----KVDA 17 267377.MMP0423_from_201_to_305 89.1% 27.6% -----------PEFEK-Q---KCI------------FDRLALMQHYQIPTR-LLDWTKNPLVALYFAVEEH-------QE 18 351745.Sputw3181_2913_from_17_ 84.2% 23.2% -----------EAREK-H---SNT------------FELLTYAQHYGLPTR-LLDWTKNLLVAIYFACKDK--------- 19 319224.Sputcn32_2997_from_29_t 79.2% 20.0% -----------EARER-H---TDL------------LELLTYAQHYGLPTR-LLDWTENVLVALYFACST---------- 20 325240.Sbal_1265_from_26_to_12 87.1% 20.7% -----------AAKDK-H---SNT------------LELLTYAQHYGLPTR-LLDWSENVLVATYFACQD---------- 21 228405.HNE_3339_from_26_to_125 85.1% 21.7% -----------HLVDKEP---HNL------------IEWLFLMQHHGLPTR-LLDWSESALIALFFAVESHE------DE 22 318161.Sden_1048_from_20_to_11 83.2% 18.4% -----------NHHDYIE---SN-------------WELYSLMQHYGFPTR-LLDWSTSVIVALYFALDGDA-------D 23 282459.SAS0037_from_20_to_113 81.2% 23.0% -----------IFLKE-T---YSD------------WDMLTIAQHHGLATR-LLDWSFNPLVAAFFAVQTY-------ED 24 386415.NT01CX_1348_from_21_to_ 82.2% 21.2% -----------EFIDTGK---YDD------------WNLLAIAQHYGFATR-FLDWTHNPLIAAYFAVNKY-------YD 25 218491.ECA2892_from_50_to_145 84.2% 23.2% -----------AYENVPN---YFI-------------EQLALAQHHGLATR-LLDWTINPLIACYFACCSY-------PD 26 316055.RPE_1558_from_35_to_135 82.2% 21.2% -----------EFIDLTR---MTD------------WDKLALAQHHGLPTR-LLDWTTNPLVAAYFAVTAS-------PR 27 402881.Plav_0332_from_11_to_11 87.1% 24.8% -----------FFLTVRP---TDD------------WEWLALAQHHGLPTR-LLDWTTNPLVAAFFAVSTV-------DA 28 392499.Swit_3474_from_25_to_12 83.2% 23.0% -----------RFVSPRP---LDD------------LEWLALAQHFAVPTP-LLDWTTNPLIALYFACLPT-------QK 29 351605.Gura_1407_from_33_to_13 85.1% 18.4% -----------PYLGFTP---TND------------WQWLAVAQHNRLPTR-LLDWTRNPLAALWFTVCKP-------AD 30 269482.Bcep1808_5844_from_28_t 85.1% 22.1% -----------PHLDPAPN--LDA------------CDWLALAQQHGMRTR-LLDWSGNALAALWFAVRTA-------NG 31 431943.CKL_0041_from_33_to_175 98.0% 20.0% LDFKVGDGNDKSFIDPSNWPSEEL------------LELMALAQHCGVPTS-LIDWSKRSYIAAYFAASSA------LKH 32 399742.Ent638_1361_from_35_to_ 91.1% 20.0% ----------YHHENGRT---LAD------------FELLAKLQHHGAATR-LVDFSRNMLVALWFACNSE--------- 33 295405.BF4286_from_44_to_146 88.1% 17.4% ----------YGKLDLQTE--LSD------------LEILAEIQHLGGATC-LTDFTTNFLIALWFATSPK--------- 34 282458.SAR1884_from_104_to_211 86.1% 16.4% ------DLIEYTCLNKKEYKAEDFKKR---------ENNMAYLQHYGLRTT-LIDITENPFIALLF-LTSN--------- 35 431943.CKL_3838_from_19_to_108 83.2% 18.7% -------------LSKLDVFSSIFK-----------------LQHYGFPTR-ICDLSISPLSSLFFTIEDN--------- 36 400668.Mmwyl1_1746_from_116_to 99.0% 19.8% -----------KRLGSSSLKDSDLIRFKSSP--EFALFSLSLAQHYGLPSV-GLDATDDIETALFFATYKY--------- 37 269796.Rru_A0303_from_18_to_13 95.0% 17.1% ------------NVNSNSKN----------------MIYQAVSQHYGWRSF-FVDASCNPAVSAWFAAKRYSQKNILEMT 38 435590.BVU_2115_from_47_to_160 94.1% 16.7% --------LLVDKIKAEKISEKDLLIR-------KKLLQWSIIQHYEVTETPLIDVTQSLRVACSFAQLDN--------- consensus/100% ...........................................pp.th.p..hhDho.....uh.F.............. consensus/90% ..............t..........................hhQHath.o..hlDho.s.hhAhaFsh............ consensus/80% ..............t.......t.............h..hshhQHaGhsTp.llDho.sshlAhaFAhtp.......... consensus/70% ............hhs.......s.............hphLshhQHaGhPTR.LLDaTpsPhlAhaFAsps.......... cov pid 161 ] 170 1 167879.CPS_2223_from_171_to_27 100.0% 100.0% -VLTKDGKIT 2 114615.BRADO3625_from_150_to_2 100.0% 40.4% RADDGNARIF 3 292415.Tbd_2466_from_34_to_153 99.0% 28.1% -PLPGAKAVA 4 338966.Ppro_2922_from_28_to_12 86.1% 26.1% DKFDRDGVIW 5 338966.Ppro_2571_from_30_to_12 86.1% 25.2% EKFDRDGAIW 6 338963.Pcar_0661_from_28_to_12 86.1% 27.9% CKFNLDGAIW 7 319795.Dgeo_0510_from_28_to_12 86.1% 27.0% DHYSQDGVVW 8 246197.MXAN_1974_from_28_to_12 87.1% 25.5% ERYGEDGMVW 9 234267.Acid_0172_from_30_to_13 93.1% 25.2% ERTLNDGVVW 10 243090.RB4201_from_41_to_157 100.0% 27.4% LVLDAGGKMS 11 295405.BF2854_from_245_to_337 79.2% 23.7% ----VDGKLF 12 318167.Sfri_2606_from_23_to_13 89.1% 19.2% DKNAKNGQVL 13 210007.SMU.804_from_37_to_141 91.1% 18.4% -PEKKTSKVY 14 205921.SAK_1940_from_28_to_122 85.1% 23.6% --EGDNGCIY 15 205922.Pfl_2429_from_33_to_127 79.2% 21.6% E----DGVVQ 16 216596.RL1933_from_207_to_311 88.1% 20.5% DGHEVDGEVI 17 267377.MMP0423_from_201_to_305 89.1% 27.6% KGNLLDGRLF 18 351745.Sputw3181_2913_from_17_ 84.2% 23.2% --NDIDGKVF 19 319224.Sputcn32_2997_from_29_t 79.2% 20.0% -------ALL 20 325240.Sbal_1265_from_26_to_12 87.1% 20.7% --DETDGELF 21 228405.HNE_3339_from_26_to_125 85.1% 21.7% KSKSKDAVVW 22 318161.Sden_1048_from_20_to_11 83.2% 18.4% VDDAG-SAID 23 282459.SAS0037_from_20_to_113 81.2% 23.0% CDA----VIY 24 386415.NT01CX_1348_from_21_to_ 82.2% 21.2% SDA----VIY 25 218491.ECA2892_from_50_to_145 84.2% 23.2% KDG----VIY 26 316055.RPE_1558_from_35_to_135 82.2% 21.2% PTL----VRS 27 402881.Plav_0332_from_11_to_11 87.1% 24.8% KSAKDGSVIY 28 392499.Swit_3474_from_25_to_12 83.2% 23.0% KEP---GVVI 29 351605.Gura_1407_from_33_to_13 85.1% 18.4% KEE--AGVVW 30 269482.Bcep1808_5844_from_28_t 85.1% 22.1% TGG--DGAVW 31 431943.CKL_0041_from_33_to_175 98.0% 20.0% YEENNDKKLA 32 399742.Ent638_1361_from_35_to_ 91.1% 20.0% --SDKTGLLF 33 295405.BF4286_from_44_to_146 88.1% 17.4% --EDADGKLV 34 282458.SAR1884_from_104_to_211 86.1% 16.4% -SQVFNNATL 35 431943.CKL_3838_from_19_to_108 83.2% 18.7% SQSNSDGVVY 36 400668.Mmwyl1_1746_from_116_to 99.0% 19.8% --RLNNGIAT 37 269796.Rru_A0303_from_18_to_13 95.0% 17.1% EDCHEVGIFF 38 435590.BVU_2115_from_47_to_160 94.1% 16.7% --ANNYAYIY consensus/100% ........h. consensus/90% .......hh. consensus/80% ......shlh consensus/70% .....suhlh