Family alignment for the GAF domain, displayed in

                     cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 PHYE_ARATH     100.0% 100.0%     DIGALCDTVVEDVQR-------LTGYDRVMVYQFHE----------------------------------DDHGEVVSEI    
 2 D89623b         81.8%  14.8%     DLEATLQIVMEQARI-------LMQADRSTLFLYRK-----------------------------------EMGELWTKV    
 3 D89624b         84.5%  14.1%     DLEDTLKRVMDEAKE-------LMNADRSTLWLIDR-----------------------------------DRHELWTKI    
 4 D89623a         82.3%   9.1%     ALENMLEKVLEAITLK---IGQILQAEHTAIFLVDY-----------------------------------DKCQLWSKV    
 5 D89624a         84.5%  14.6%     GFENILQEMLQSITLK---TGELLGADRTTIFLLDE-----------------------------------EKQELWSIV    
 6 CNRABOVINa      82.9%   5.2%     QAEKCVFNVMKKLCF-------LLQADRMSLFMYRA---------------------------------RNGIAELATRL    
 7 CNRBBOVINa      82.9%   5.8%     NMERVVFKILRRLCS-------ILHADRCSLFMYRQ---------------------------------RNGVAELATRL    
 8 CNRCHUMANa      82.9%   8.4%     TPEQGVHRALQRLAH-------LLQADRCSMFLCRS---------------------------------RNGIPEVASRL    
 9 VNFA_AZOVI      83.4%   8.2%     DLSSIISILLRLMKR-------HMKVVRGMVTLYDR-----------------------------------DSGSIVLHE    
10 RCANFTAN        82.9%  11.5%     DPGESLGMILKTMRS-------EMRMERGTVSLMDR-----------------------------------RRGQVFIHQ    
11 CNRABOVINb      84.0%  10.1%     DIERQFHKALYTVRA-------FLNCDRYSVGLLDMTKQKEFFDVWPVLMGEAPPYAGPRTPDGREINFYKVIDYILHGK    
12 CNRBBOVINb      84.0%  10.1%     DIERQFHKAFYTVRA-------YLNCDRYSVGLLDMTKEKEFFDVWPVLMGEAQAYSGPRTPDGREILFYKVIDYILHGK    
13 CN2A_RATb       81.2%  10.9%     DVSVLLQEIITEARN-------LSNAEICSVFLLDQ-------------------------------------NELVAKV    
14 A48719          84.0%  10.0%     DVTALCHKIFLHIHG-------LISADRYSLFLVCE--------------------------------DSSNDKFLISRL    
15 CN2A_RATa       81.2%   9.9%     DATSLQLKVLRYLQQ-------ETQATHCCLLLVSE-----------------------------------DNLQLSCKV    
16 A48719-2        86.2%   8.3%     SLEVILKKIAATIIS-------FMQVQKCTIFIVDEDCS-------------DS-------------FSSVFHMECEELE    
17 YNE6_CAEEL      80.7%  12.7%     NLSALISCIIAEAKK-------NTEAEDYAVFLHDE-----------------------------------DNKQMVLFN    
18 MTCY3A225       81.2%  12.6%     DLEATLRAIVHSATS-------LVDARYGAMEVHDR---------------------------------QHRVLHFVYEG    
19 D9090445        80.7%  13.6%     LIKATLQKTMEASIH-------QTGAQLGSLFLLDG-----------------------------------DGRVTESIL    
20 PT1P_ECOLI      81.2%  10.4%     RLNEALNILVTDICL-------AMDTEVCSVYLADH-----------------------------------DRRCYYLMA    
21 ANFA_AZOVI      82.3%   9.3%     DLADALSIVLGVMQQ-------HLKMQRGIVTLYDM-----------------------------------RAETIFIHD    
22 NIFA_AZOBR      83.4%   7.7%     DLQQTLREVLRALAY-------QLQMHRGRVYLVGE------------------------------------DNVLRLVA    
23 NIFA_AZOCA      83.4%   7.1%     RLEVTLANVVNVLSS-------MLQMRHGMICILDS------------------------------------EGDPDMVA    
24 NIFA_AZOVI      81.2%   9.1%     QIDELLEQVLAVLHN-------DLGLLHGLVTISDP------------------------------------EHGALQIG    
25 NIFA_ENTAG      81.8%   7.6%     NTARALAAILEVLHD-------HAFMQYGMVCLFDK-----------------------------------ERNALFVES    
26 NIFA_HERSE      82.9%   9.3%     DLSKTLREVLNVLSA-------HLETKRVLLSLMQD------------------------------------SGELQLVS    
27 NIFA_KLEPN      81.8%   6.5%     EASKTLQEVLSVLHN-------DAFMQHGMICLYDS-----------------------------------QQEILSIEA    
28 NIFA_RHIET      83.4%   4.9%     RLEITLANVVNVLSS-------FLQIRCGAIVVLDA-----------------------------------EGQPEIAAT    
29 YGAA_ECOLI      81.2%   7.1%     GHQDRFQRLITTLRQ-------VLECDASALLRYDS-------------------------------------RQFIPLA    
30 S25203          83.4%   9.3%     RGKDLLESIARRARL-------LLKLDVSYVGLHEE-----------------------------------DRPGTVVLS    
31 D89625b         82.3%   7.5%     RSSLNPEDIFAAITQK---LGQALQVDGCVLSLWTEEDEFV-----------KC-------------VGLYDSSRHSEDS    
32 D89626          83.4%  10.0%     CAAASIEEIFFQVQQV---VFRYLGSIDRLALLIDV----------------------------------NGCGHLELVN    
33 D9090278        77.3%   9.4%     GLQELIEVIRAEIRQ-------VISVDEIFLYLYDQ-----------------------------------SQDSLTPLL    
34 D9090461b       81.2%  15.1%     DLRSLFQTTVTEVRK-------LLVADRVMIIKVRQ----------------------------------NKNFSWGEIQ    
35 D90914106       79.0%   8.8%     DVGVAVGQFSLIWFG-------LIDPDRQTIIPYMA------------------------------------GGHTTAYL    
36 KPNNIFLA2       81.8%   5.4%     EASKTLQEVLSVLHN-------DAFMQHGMICLYDS---------------------------------QQEILSIEALQ    
37 RHMNIFAX        82.3%   4.3%     RLEITLANVVNVLSS-------FLQIRCGAIVVLDA------------------------------------EGQPEIAA    
38 SYCCPNC77       84.0%  13.8%     DPEEIMQVAVEKLGQ-------GLGICRCVIYRCSA----------------------------------DDTVATINHE    
39 FHLAECOLIb      82.9%   7.6%     DMDELVSEVAKEIHY-------YFDIDDISIVLRSH--------------------------------RKNKLNIYSTHY    
40 NIFA_BRAJA      84.0%  11.5%     RLEVTLANVLGLLQS-------FVQMRHGLVSLFND------------------------------------DGVPELTV    
41 NIFA_RHIME      80.7%   7.7%     RLETTLNNFVNTLSL-------ILRMRRGGLEIPAS-----------------------------------EGETKITAA    
42 D89625a         85.6%  13.0%     DYRQILQAIVDTVGH-------MLEVDVCLLRSFQD------------------------------------GQLVDEGF    
43 D908232         80.7%   7.7%     SLESLVRQLLEMLEM-------VTDMESTYLTKVDV----------------------------------EARLQHIMFA    
44 D9090221        80.7%  10.6%     DLSVILQTTVDEVRK-------FLQADQVVIYRCYS-----------------------------------PRASRILVA    
45 D909034         82.9%  10.9%     QPTLIFQTAARQVGN-------VFAVSRCLIHNYSE-----------------------------------ATTLQVPVV    
46 D9090461c       81.8%  13.7%     ELQNIFRATSDEVRH-------LLSCDRVLVYRFNP-----------------------------------DWSGEFIHE    
47 D90905          82.3%   7.5%     DLLGAMGYALRSLHN----LNQFLELTPLMATRVTD----------------------------------ADGSALVLMR    
48 D9090516        79.0%   6.6%     PSDEKFNRITRLLCR-------VLDMPVAAISLVDE-------------------------------------NRQWFKS    
49 D9090517        79.0%   6.6%     PIEERFERITRMVCR-------SLKVPIAAISIVDE-------------------------------------SRQWFKS    
50 D9090585        81.2%  15.1%     KLETILRTTVTEVRR-------TIHADRVLIHHIQE-----------------------------------DGLGTTIAE    
51 D90905111       80.7%  15.8%     DLPTIFNTVVQEIRQ-------FLEADRVVIFQFSP----------------------------------DSDFSVGNIV    
52 D9090888        79.6%  12.7%     HLGTIFQTTVTEVRH-------LLQTDRVYIALLQG-----------------------------------NSPLAVVAE    
53 D9091253        81.8%  13.5%     DLSEILNNAVTAVQK-------FLFVDRLVIYQFHYSQPSLTPLEENQIPAPRP-------------RQQYGEVTYEARR    
54 D9091616_       81.2%  12.6%     LLTNRNSTFFEEATQT---LARNLGLPICLVGLMVE----------------------------------DEINIVSAVG    
55 D90916105       84.5%  14.1%     NLETVLNTTVAEVKT-------LLQVDRVLIYRIWQ----------------------------------DGTGSAITES    
56 FDU59741        85.1%  16.6%     QLKEILHTTVTEVQR-------ILQADRVLIYHVLP--------------------------------DGTGKTISESVL    
57 MXU37008        83.4%   7.2%     THPPDPESIYTLLAH-------LAVPDVVDWCLVDT-------------------------------LEQRPWVTRVAAA    
58 RSPNGR2341      82.9%   7.1%     SLEIKLANVINTLPA-------LLPMRRGAIVVVGA------------------------------------EGEPETTA    
59 SYCORF440       81.8%   7.0%     DLLGAMGYALRSLHN----LNQFLELTPLMATRVTD----------------------------------ADGSALVLMR    
60 SYCSLLE96a      90.1%  22.9%     TLRETLQVIVEEARI-------FLGVDRVKIYKFAS----------------------------------DGSGEVLAEA    
61 SYCSLLE96c      81.8%  16.8%     NINDILYSTVTEVRQ-------FLNTDRVVLFKFNS----------------------------------QWSGQVVTES    
62 SYCSLLLH        80.7%   7.1%     DFDSAAQATLTYLHQ-------RMGLSLWMITRTEV------------------------------------DNWIVLQA    
63 SYCSLLLH8       79.6%  13.4%     DIDEIQGVIQKNLDQ----ARALFGCERLVFYYHPR-------------------------------------YQPEAMV    
64 SYCSLLLH8b      81.8%  15.7%     NSEQVFDIAAQEIRL-------ALKADRVIVYRFDA----------------------------------TWAGTVIVES    
65 SYCSLRG61_      79.0%   5.9%     DTTAITKEITEALIH-------DFHCVFARIWLTEP-----------------------------------DGASLKLVA    
66 CNRCHUMANb      84.0%   7.8%     DVERQFHKALYTVRS-------YLNCERYSIGLLDMTKEKEFYDEWPIKLGEVEPYKGPKTPDGREVNFYKIIDYILHGK    
67 ETR1_ARATH      81.2%   7.2%     DRHTILKTTLVELGR-------TLALEECALWMPTR-------------------------------------TGLELQL    
68 NIFA_RHOCA      84.5%  10.3%     RSRRPLRRCPDPVAR-------CRDLQRAVVFPRSA-------------------------PWGAGALAEPGEGAGVNPY    
69 PHYB_ORYSA     100.0%  69.1%     DVKLLCDTVVEHVRE-------LTGYDRVMVYRFHE----------------------------------DEHGEVVAES    
70 PHYD_ARATH     100.0%  68.9%     DIKLLCDTVVESVRD-------LTGYDRVMVYKFHE----------------------------------DEHGEVVAES    
71 PHY_CERPU      100.0%  62.1%     DIELLCDTIVEEVRE-------LTGYDRVMAFKFHE----------------------------------DEHGEVVAEI    
72 Y07I_MYCTU      84.5%   9.9%     TSAEVSQRVLAYLVE-------QLGVDVSFLRHNDR-------------------------------------DRRATRL    
73 D9082613        80.7%  11.2%     DLNRDFNALMAGETS-------FLATLANTSALLYE--------------------------------RLTDINWAGFYL    
74 D9087716        83.4%   7.1%     DLDDLIADVAREIHH-------FFGLASVSMVLGDH--------------------------------RKNEKFSLWCSD    
75 D9090521        81.2%  12.5%     GLISLCQSQVRLLQQ-------GLRVDWCGVYLNQE---------------------------------ETEQGLVPLVV    
76 D90908115       77.3%   7.1%     VVADACASLAALAPP-------LFPNIAGTISIFDS---------------------------------TANYFEQVKTW    
77 D90910124       80.7%   5.4%     SEVEFLQRGQEFAEE-------LTKSKIAFIHFVND-----------------------------------DEQTIELVA    
78 D9091257        77.9%   7.7%     HLPTIWQEAVDSIGS-------TLGVSRCLLLTKDF----------------------------------QSRHLQIEAE    
79 ECOFHLAb        81.2%   6.0%     DMDELVSELAKEIHY-------YFDIDDISIVLRSH--------------------------------RKNKLNIYSTHY    
80 SYCCPNC67       95.0%  35.6%     NLRDFYDVIVEEVRR-------MTGFDRVMLYRFDE----------------------------------NNHGDVIAED    
81 SYCSLRA62       86.2%  11.0%     DLYGFFDQATELIRT-------ALGVDYCGLWELLP-----------------------------------NRSALVLCA    
82 SYCSLRG10       77.3%   7.7%     TVKDACGVIAALAQP-------LFPDCCGGIFILSA-----------------------------------QNNCLERVT    
83 FHLAECOLIa      81.8%   7.7%     DLASLCEALSQLVKR-------SALADNAAIVLWQA-----------------------------------QTQRASYYA    
84 YEHU_ECOLI      77.3%   6.9%     STEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDR---------------------------------EKLLAFTGIGD    
85 YNTC_AZOCA      83.4%  11.5%     DLSCLSPDLLARIAD-------TFHLQRVSLFQVHE--------------------------------AEGRGIAATCVI    
86 ASU14596        76.8%   6.1%     NEQELQPTLMDKIGE-------YFGVQHWGIYLIDS----------------------------------ESKADTETQS    
87 D9090461a       82.3%  14.9%     DLHNAYRLVVEGLQR-------GLGVDRVLLVQNAV-------------------------------FPNRQSRLVAQAI    
88 D9091186        79.6%   8.8%     QLGLLFGCQRVHVIY-------HDPAKDCLHMAEEW-----------------------------------CAVGIAPRL    
89 SYCSLLE96b      90.6%   8.3%     DRPETWQYALETVGQ-------AVEADGAVLYIAPD------------------LTGSVAQHYQWNLRFDWGNWLETSLW    
90 ATAC000104      82.3%   8.5%     DRHTILYTTLVELSK-------TLGLKNCAVWIPNE-----------------------------IKTEMNLTHELRPRI    
91 BSZ752086       75.1%  11.6%     LNENSCKSVAAIIHK-------LTGTDAVSLTDKEK------------------------------------ILAHVGAG    
92 SSU70379        83.4%   6.0%     TEQTLRLTVMDNISE-------YFGVQRWGIYLLDT--------------------------------NNNLASVEAKGV    
   consensus/100%                   ................................................................................    
   consensus/90%                    t.t..ht.hht.ht.........h.ht.h.hh.ht.............................................    
   consensus/80%                    phtthhtthht.ltt.......hhthphshlhhhpt.......................................h..h.    
   consensus/70%                    shpthhpphhptlpp.......hhthppshlhhhpt....................................ttthhhh.    

                     cov    pid  81          .         1         .         .         .         .         :         . 160
 1 PHYE_ARATH     100.0% 100.0%     RRSDLEP---------YLGLHYPATDIP---QAARFLFKQN--RVRMIC-DCNATP-------VKVVQSEELKRPLCLVN    
 2 D89623b         81.8%  14.8%     AAAADTTQL--------IEIRIPANR-----GIVGYVASTG--DALNIS-DAYKDP--------RFDPTTDRKTGYL---    
 3 D89624b         84.5%  14.1%     TQDNGST----------KELRVPIGK-----GFAGIVAASG--QKLNIPFDLYDHP------DSATAKQIDQQNGYR---    
 4 D89623a         82.3%   9.1%     PQDNGQKF---------LEIRIPITV-----GIPGHVASTG--QYLNIS-ETATHP--------LFSPELERQMGYK---    
 5 D89624a         84.5%  14.6%     AAGEGDRS---------LEIRIPADK-----GIAGEVATFK--QVVNIPFDFYHDP------RSIFAQKQEKITGYR---    
 6 CNRABOVINa      82.9%   5.2%     FNVHKDAVLEECLVAPDSEIVFPLDM-----GVVGHVALSK--KIVNVP-NTEEDE--------HFCDFVDTLTEYQ---    
 7 CNRBBOVINa      82.9%   5.8%     FSVQPDSVLEDCLVPPDSEIVFPLDI-----GVVGHVAQTK--KMVNVQ-DVMECP--------HFSSFADELTDYV---    
 8 CNRCHUMANa      82.9%   8.4%     LVVTPTSKFEDNLVGPDKEVVFPLDI-----GIVGWAAHTK--KTHNVP-DVKKNS--------HFSDFMDKQTGYV---    
 9 VNFA_AZOVI      83.4%   8.2%     SFGLSPEEA--------GKGVYLLGE-----GIIGRVVETG--QSIVVP-CIRDEP-----------AFLNRTGSRDRDS    
10 RCANFTAN        82.9%  11.5%     SFGLTAEEE--------SRGVYAMGE-----GITGKVAETG--RVIIAP-RLHESP-----------DFLDRTGAHAGES    
11 CNRABOVINb      84.0%  10.1%     EDIKVIPNP--------PPDHWALVS-----GLPTYVAQNG--LICNIM-NAPSED-----------FFAFQKEPLDESG    
12 CNRBBOVINb      84.0%  10.1%     EDIKVIPSP--------PADHWALAS-----GLPTYVAESG--FICNIM-NAPADE-----------MFNFQEGPLDDSG    
13 CN2A_RATb       81.2%  10.9%     FDGGVVDDES-------YEIRIPADQ-----GIAGHVATTG--QILNIP-DAYAHP--------LFYRGVDDSTGFR---    
14 A48719          84.0%  10.0%     FDVAEGSTLEEASN---NCIRLEWNK-----GIVGHVAAFG--EPLNIK-DAYEDP--------RFNAEVDQITGYK---    
15 CN2A_RATa       81.2%   9.9%     IGEKVLG----------EEVSFPLTM-----GRLGQVVEDK--QCIQLK-DLTSDD----------VQQLQNMLGCE---    
16 A48719-2        86.2%   8.3%     KSSDTLTR---------ERDANRINY-----MYAQYVKNTM--EPLNIP-DVSKDK---------RFPWTNENMGNIN--    
17 YNE6_CAEEL      80.7%  12.7%     NETMLM-----------TGKKFDMGY-----GIVGKVASTM--RTMNIR-DVSRCP----------FFNEEIDEQFSIK-    
18 MTCY3A225       81.2%  12.6%     IDEETVR----------RIGHLPKGL-----GVIGLLIEDP--KPLRLD-DVSAHP------------ASIGFPPYHPP-    
19 D9090445        80.7%  13.6%     ARGATDQSQK------KNIVGQVLDK-----GLAGWVRENK--RTGLIN-DTTKDY----------RWLKLPDEPYQ---    
20 PT1P_ECOLI      81.2%  10.4%     TRGLKKPR--------GRTVTLAFDE-----GIVGLVGRLA--EPINLA-DAQKHP-----------SFKYIPSVKEER-    
21 ANFA_AZOVI      82.3%   9.3%     SFGLTEEEK--------KRGIYAVGE-----GITGKVVETG--KAIVAR-RLQEHP-----------DFLGRTRVSRNGK    
22 NIFA_AZOBR      83.4%   7.7%     ANGLSNEAA--------AQIEFRDGE-----GITGRILKTG--MPAVVP-NLAEEP-----------LFLNRTGGREDLD    
23 NIFA_AZOCA      83.4%   7.1%     TTGWTPEMA--------GQIRAHVPQ-----KAIDQIVATQ--MPLVVQ-DVTADP-----------LFAGHEDLFGPPE    
24 NIFA_AZOVI      81.2%   9.1%     AIHTDSEAVAQ----ACEGVRYRSGE-----GVIGNVLKHG--NSVVLG-RISADP-----------RFLDRLALYDL--    
25 NIFA_ENTAG      81.8%   7.6%     LHGIDGERKKE-----TRHVRYRMGE-----GVIGAVMSQR--QALVLP-RISDDQ-----------RFLDRLNIYDY--    
26 NIFA_HERSE      82.9%   9.3%     AIGLSYEEF--------QSGRYRVGE-----GITGKIFQTE--TPIVVR-DLAQEP-----------LFLARTSPRQSQD    
27 NIFA_KLEPN      81.8%   6.5%     LQQTEDQTLPG-----STQIRYRPGE-----GLVGTVLAQG--QSLVLP-RVADDQ-----------RFLDRLSLYDY--    
28 NIFA_RHIET      83.4%   4.9%     GDIPPSSQ---------SAARGVIPK-----AVIDHIATTG--MPLIVK-DVSKSE----------LFQAEPQPPWSSG-    
29 YGAA_ECOLI      81.2%   7.1%     IDGLAKD---------VLGRRFALEGH----PRLEAIARAG--DVVRFPADSELPD----------PYDGLIPGQESLK-    
30 S25203          83.4%   9.3%     ADGNAVK----------VAESYRLPAD---GGLGAMVRTCR--APFWTP-DYLGDN----------SFTHVEAVDDIVRA    
31 D89625b         82.3%   7.5%     LDNHRLITQELP-----ESQAPILEN-----PILQEILKTH--EPVIIT-DMNHSD----------WETKRFDLHLKMP-    
32 D89626          83.4%  10.0%     AGTRSKTQQQYL-----LADASWISR-----SICQKVFEEK--IVIQTA-DTHKDE----------RFSSEHSILLKG--    
33 D9090278        77.3%   9.4%     YKTEE------------SLQNFKAIE-----KIVERVLKLN--QVEVID-DIQNDQ-----------DYLNQPSK-----    
34 D9090461b       81.2%  15.1%     AEAQTDDKLC-------LLPPKERVP-----LSSRWIDHFA--KGLILAMDDTDDQ----------RADFDQSMLAL---    
35 D90914106       79.0%   8.8%     EN---------------IRITFKDEPAG--RGPTGTAAREG--RLVICS-NISQDP--------KMAPWRGSAMRYG---    
36 KPNNIFLA2       81.8%   5.4%     QTENQTLPGS-------TQIRYRPGE-----GLVGTVLAQG--QSLVLP-RVADDQ-----------RFLDRLSLYDY--    
37 RHMNIFAX        82.3%   4.3%     TGDIPPSSQ--------SAARGVIPK-----AVIDHIATTG--MPLIVK-DVSKSE------LFQAEPQPPWSSGTV---    
38 SYCCPNC77       84.0%  13.8%     FLGSGVGSI--------KGYPWPLKDN----PLFQEVVVLK--EAIAID-NIDRDPRL--GEPEPSTGEVKTLVKSC---    
39 FHLAECOLIb      82.9%   7.6%     LDKQHPAH---------EQSEVDEAG-----TLTERVFKSK--EMLLIN-LHERDD---------LAPYERMLFDTWG--    
40 NIFA_BRAJA      84.0%  11.5%     GAGWSEG----------TDERYRTCVP---QKAIHEIVATG--RSLMVE-NVAAE---------TAFSAADREVLGASD-    
41 NIFA_RHIME      80.7%   7.7%     TRNSGSP----------SAADYTVPK-----AAIDQVMTAG---RLVVP-DVCNSE----------LFKDQIKWRGIG--    
42 D89625a         85.6%  13.0%     VYQKDSP-----AAVEKTIHDSAPLT-----ILADTVWETR--EVQIIH-DVAGDE-------RIHGDSPELQHRNDAF-    
43 D908232         80.7%   7.7%     RNSQKMY----------IPENFTVSWD---YSLCKRAIDEN----CFFS-DEVPDR-----------WGDCIAARNLG--    
44 D9090221        80.7%  10.6%     APSSSLPANGD---RRHIPERGPDSN-----GEPTEPIPCQ---TINSL-RQLPLD------------EITLGPRAK---    
45 D909034         82.9%  10.9%     AEYLGGQFT--------SLLAGEIAVEQ---AYDPTIIQGD--RAMAVV-DLDQDL--------NSTHTKAFYQRFQ---    
46 D9090461c       81.8%  13.7%     SVAQMWEPLKDLQNNFPLWQDTYLQE-----NEGGRYRNHE---SLAVG-DVETAG--------FTDCHLDNLRRFE---    
47 D90905          82.3%   7.5%     EGEISIFE---------QIHGHKNSLK----GTIKGALQKA--RQVNLTLDSSTVL---------SYFDRQLRQELP---    
48 D9090516        79.0%   6.6%     IRGLD------------LTETPRCV------SFCAHTILED--RTLVIS-DTLSDL---------RFADNPLVLEAPH--    
49 D9090517        79.0%   6.6%     IQGLN------------ASETPREI------AFCAHAILRD--ELLLVE-DATQDE---------RFADNPLVTDEPF--    
50 D9090585        81.2%  15.1%     SVVNG--------QPSVMQMDLSPES----FPPECYQRYLN--GYIYASRDQLPDC--------AINCAVQCFTVAE---    
51 D90905111       80.7%  15.8%     AESVL-APFKPIINSAIEETCFSN-------NYAQRYQQGR---IQVIE-DIHQSH--------LRQCHIDFLARLQ---    
52 D9090888        79.6%  12.7%     SCGPA----YKTSLNSQIAASPNPE-----EMIVKTIPTEA--MVVHHP-DQLPKG----------DPLRRSFLRYQ---    
53 D9091253        81.8%  13.5%     SPEID-----TMLGIMTENDCFSQVF-----SYEQKYLKGA---VVAVS-DIENHY-------SSSYCLVGLLQRYQ---    
54 D9091616_       81.2%  12.6%     IYRLG------VGNPNLVSRQISRND-----AYCTLVVDSA--MPLMIT-DALAEP---------FFAEGELYQRYG---    
55 D90916105       84.5%  14.1%     VNANY---------PSILGRTFSDEVF----PVEYHQAYTK--GKVRAINDIDQDD--------IEICLADFVKQFG---    
56 FDU59741        85.1%  16.6%     PDYPT-----------LMDLEFPQEVF----PQEYQQLYAQ--GRVRAIADVHDPTA------GLAECLVEFVDQFH---    
57 MXU37008        83.4%   7.2%     CLDPT-----EEERSGALPTRTELWDD----ATVGLLPVLRTGDPELVP-AVTDSL----LRAAAAETAHPALLRLLQ--    
58 RSPNGR2341      82.9%   7.1%     TFGVE---------PPSSGARHIAAK-----AAIDRIVAKG--APLVVP-DTCKSE-----------LFQDELQSIVS--    
59 SYCORF440       81.8%   7.0%     EGEIS---------IFEQIHGHKNSLK----GTIKGALQKA-RQVNLTL-DSSTVL-----------SYFDRQLRQELP-    
60 SYCSLLE96a      90.1%  22.9%     VNRAA--------LPSLLGLHFPVEDIP--PQAREELGNQR---KMIAV-DVAHRRKKSHELSGRISPTEHSNGHYTTVD    
61 SYCSLLE96c      81.8%  16.8%     HNDFC--------RSIINDEIDDPCF----KGHYLRLYREG--RVRAVS-DIEKAD--------LADCHKELLRHYQ---    
62 SYCSLLLH        80.7%   7.1%     QDN-------------GYGVKRGDVFHW-PDSFCSRMVRGE--GPHIAP-QSNLVE---------AYRNAPIAQQVD---    
63 SYCSLLLH8       79.6%  13.4%     VQALD---------LTTQGLIDSKDP----HPWGQEDMPSQ---IVAIN-DTSGAS--------ISNPHRQWLEQHQ---    
64 SYCSLLLH8b      81.8%  15.7%     VAEGY--------PKALGATIADPCF----ADSYVEKYRSG--RIQATR-DIYNAG--------LTPCHIGQLKPFE---    
65 SYCSLRG61_      79.0%   5.9%     SSGLH--------TSTNGSFARVPMG----AYKVGKIAQSC--IPFLSN-HLANET---------WVKDRDWAIANN---    
66 CNRCHUMANb      84.0%   7.8%     EEIKVIPTP--------PADHWTLIS-----GLPTYVAENG--FICNMM-NAPADE--------YFTFQKGPVDETGWV-    
67 ETR1_ARATH      81.2%   7.2%     SYTLRHQHP----------VEYTVPIQL---PVINQVFGTS-RAVKISP-NSPVAR------------LRPVSGKYM---    
68 NIFA_RHOCA      84.5%  10.3%     VIAATA-------FQRSPEAPAADVLPD---AVARIVFRSG--VPFVSF-DLVAEF-----------GAEAVPKRLR---    
69 PHYB_ORYSA     100.0%  69.1%     RRSNLEP---------YIGLHYPATDIP---QASRFLFRQN--RVRMIA-DCHAAP-------VRVIQDPALTQPLCLVG    
70 PHYD_ARATH     100.0%  68.9%     KRNDLEP---------YIGLHYPATDIP---QASRFLFKQN--RVRMIV-DCYASP-------VRVVQDDRLTQFICLVG    
71 PHY_CERPU      100.0%  62.1%     RRMDLEP---------YMGLHYPATDIP---QASRFLLMKN--RVRLIA-DCYASP-------VKLIQDPDIRQPVSLAG    
72 Y07I_MYCTU      84.5%   9.9%     VAEWP------------PRLNIPDPD-----PLRLIYFADA-DPVFALC-EHAKEP--------LVFRPEPATEDYQR--    
73 D9082613        80.7%  11.2%     LEDDTLVLG-------PFQGKIACVRIPVGRGVCGTAVARN--QVQRIE-DVHVFD-------------GHIACDAA---    
74 D9087716        83.4%   7.1%     LSASHCA----------CLPRCMPGES----VLLTQTLQTR--QPTLTH-RADDLF--------LWQRDPLLLLLAS---    
75 D9090521        81.2%  12.5%     SHGSTLVE-----------SESYGLIS----LPQGEVSPPM--DDFSLP-AVPVGVG-------QLSRRSRLEPPPFD--    
76 D90908115       77.3%   7.1%     GNL----------------ACSEPLFN----GTDCWALRLG--QPHLVG-VQQHDL-----------LCSHLNPECL---    
77 D90910124       80.7%   5.4%     WSRATL-------ANYCRVVAASHYPVEE-AGIWADALRLR--RPVLIN-DYATHQ----------GKKGLPEGHAY---    
78 D9091257        77.9%   7.7%     FCQPTV-------------TAFAALIV----PEESEIWRQL--FEQHQP-ITLYNV-------------QFQGED-----    
79 ECOFHLAb        81.2%   6.0%     LDKQHP----------AHEQSEVDEAG----TLTERVFKSK--EMLLIN-LHERDD------------LALRMSSTP---    
80 SYCCPNC67       95.0%  35.6%     KRDDMEP---------YLGLHYPESDIP---QPARRLFIHN--PIRVIP-DVYGVAVPLTPAVNPSTNRAVDLTESIL--    
81 SYCSLRA62       86.2%  11.0%     GDGWDKA----------LVGNYTIDATNR--SYAGYTIQHN--GDRRME-DYEPIV-------------ELDLRISTK--    
82 SYCSLRG10       77.3%   7.7%     FWG----------------NPFCSDDVFT--PLDCWALRRG--RSHGVK-QGQHAL-----------FCNHVNDQHL---    
83 FHLAECOLIa      81.8%   7.7%     SREKDTP--------IKYEDETVLAH-----GPVRSILSRP--DTLHCS-YEEFCE----------TWPQLDAGGLYP--    
84 YEHU_ECOLI      77.3%   6.9%     DHHL---------------PGKPISS-----TYTLKAIETG---EVVYA-DGNEVP-----------YRCSLHPQCK---    
85 YNTC_AZOCA      83.4%  11.5%     DWRRPGLAFP----AMTEGSHPPLTAAGGDPLLAQWAARRR--RGETII-GRTRDL---------TGYLYGFFSHYG---    
86 ASU14596        76.8%   6.1%     IPA-----------------VCLESN-----PVGRYVVERH--APAHEQ-LILTPE-----------DWKDFCPRHD---    
87 D9090461a       82.3%  14.9%     APA----------RDIMLLDEPCADCRWL--HLLGQLPHYG---LWTVW-EGEGEF----------VQLDPVQGEFC---    
88 D9091186        79.6%   8.8%     ST----------------FQGVPVATY----PWLWANLQDS--EGVLVR-DVEQMP----------PEAEMDKVSLQFD-    
89 SYCSLLE96b      90.6%   8.3%     QELMR-------------GQPSAAMEPM---AAVQSTWEKP--RPFTSV-APLPPT----NCVPHGYTLGELEQRSDWIA    
90 ATAC000104      82.3%   8.5%     DDENE-------------NEHFGGYA-----GFSIPISESD---VVRIK-RSEEVN---------MLSPGSVLASVTSRG    
91 BSZ752086       75.1%  11.6%     MDHH--------------IPSKSLIT-----GLSKKVIKTG---HIMKA-ISQEEI-----------ECTHAECP-----    
92 SSU70379        83.4%   6.0%     SDTF-----------IEQYQRFGKAVD----PVLKYVLENH--APAHEE-LVLPEG-----------TWKQSELYQRCCS    
   consensus/100%                   ................................................................................    
   consensus/90%                    ..................................t.hh..t....h.h..t.............................    
   consensus/80%                    ..t.................th.........sh.t.hhttt....h.h..ph.tt....................h....    
   consensus/70%                    .tt...............t.ph..s......shhthhhppt..tshhh..chtts...............th.ttht...    

                     cov    pid 161          .         .         .         2         .         .         .         . 240
 1 PHYE_ARATH     100.0% 100.0%     STLRAPHGCHTQYMANMGSVASLALAIVVKGKD-------------SSKLWGLVVGHHC---------------------    
 2 D89623b         81.8%  14.8%     ------------------TRNILCLPIFNS----------------ANELIGVTQLINK---------------------    
 3 D89624b         84.5%  14.1%     ------------------TCSLLCMPVFNG----------------DQELIGVTQLVNKKKTGEFPPYN-----------    
 4 D89623a         82.3%   9.1%     ------------------INNILCMPVVSS----------------KDQIVAVVQLANK---------------------    
 5 D89624a         84.5%  14.6%     ------------------TYTMLALPLLSE----------------QGRLVAVVQLLNK-----LKPYS-----------    
 6 CNRABOVINa      82.9%   5.2%     ------------------TKNILASPIMNG-----------------KDVVAIIMVVNK---------------------    
 7 CNRBBOVINa      82.9%   5.8%     ------------------TRNILATPIMNG-----------------KDVVAVIMAVNK---------------------    
 8 CNRCHUMANa      82.9%   8.4%     ------------------TKNLLATPIVVG-----------------KEVLAVIMAVNK---------------------    
 9 VNFA_AZOVI      83.4%   8.2%     D---------------DANLSFICVPILRG-----------------RQVMGTISAERL---------------------    
10 RCANFTAN        82.9%  11.5%     R----------------RRVAFVCVPIMLG-----------------KRVLGTIGGERS---------------------    
11 CNRABOVINb      84.0%  10.1%     ----------------WMIKNVLSMPIVNK----------------KEEIVGVATFYNR---------------------    
12 CNRBBOVINb      84.0%  10.1%     ----------------WIVKNVLSMPIVNK----------------KEEIVGVATFYNR---------------------    
13 CN2A_RATb       81.2%  10.9%     ------------------TRNILCFPIKNE----------------NQEVIGVAELVNK---------------------    
14 A48719          84.0%  10.0%     ------------------TQSILCMPIKNH----------------REEVVGVAQAINK---------------------    
15 CN2A_RATa       81.2%   9.9%     ------------------LRAMLCVPVISR---------------ATDQVVALACAFNK---------------------    
16 A48719-2        86.2%   8.3%     ---------------QQCIRSLLCTPIKNG---------------KKNKVIGVCQLVNKM--------------------    
17 YNE6_CAEEL      80.7%  12.7%     ------------------ARNLIAFPLIDS----------------SCSLIGVIVLYNK---------------------    
18 MTCY3A225       81.2%  12.6%     ------------------MRTFLGVPVRVR-----------------DESFGTLYLTDK---------------------    
19 D9090445        80.7%  13.6%     ------------------ALSALGVPIVWG-----------------DELLGILTLMHS---------------------    
20 PT1P_ECOLI      81.2%  10.4%     ------------------FRAFLGVPIIQR-----------------RQLLGVLVVQQR---------------------    
21 ANFA_AZOVI      82.3%   9.3%     -----------------AKAAFFCVPIMRA-----------------QKVLGTIAAERV---------------------    
22 NIFA_AZOBR      83.4%   7.7%     ----------------EQVASLVGVPIKAA-----------------GVVVGVLTIDRI---------------------    
23 NIFA_AZOCA      83.4%   7.1%     ----------------EATVSFIGVPIKAD-----------------HHVMGTLSIDRI---------------------    
24 NIFA_AZOVI      81.2%   9.1%     ------------------EMPFIAVPIKNP----------------EGNTIGVLAAQPD---------------------    
25 NIFA_ENTAG      81.8%   7.6%     ------------------SLPLIGVPIPGA----------------DNQPAGVLVAQPM---------------------    
26 NIFA_HERSE      82.9%   9.3%     ----------------GEVISFVGVPIKAA-----------------REMLGVLCVFRD---------------------    
27 NIFA_KLEPN      81.8%   6.5%     ------------------DLPFIAVPLMGP----------------HSRPIGVLAAHAM---------------------    
28 NIFA_RHIET      83.4%   4.9%     ----------------TVPISFIGVPVKAD-----------------NKILGTISIDRVR--------------------    
29 YGAA_ECOLI      81.2%   7.1%     ------------------VHACVGLPLFAG-----------------QNLIGALTLDGM---------------------    
30 S25203          83.4%   9.3%     ----------------EGLRAVLAVPLCAG-----------------GEPMGVLYVADR---------------------    
31 D89625b         82.3%   7.5%     ------------------ARSLMVVPLLAD-----------------GKCIGSITLREG---------------------    
32 D89626          83.4%  10.0%     ------------------IRSAMAVPLWDE-----------------NKVVGVLYADAH---------------------    
33 D9090278        77.3%   9.4%     ------------------IRSLLCYSLTVQ-----------------NSIIGVLGLAHY---------------------    
34 D9090461b       81.2%  15.1%     ------------------AKANLVVPLFSG-----------------DRLWGVLSVHQC---------------------    
35 D90914106       79.0%   8.8%     ------------------FLSSAAVPIRQG-----------------GQVVAVLTFYSQ---------------------    
36 KPNNIFLA2       81.8%   5.4%     ------------------DLPFIAVPLMGP----------------HSRPIGVLAAQPM---------------------    
37 RHMNIFAX        82.3%   4.3%     ------------------PISFIGVPVKAD-----------------NKILGTISIDRVR--------------------    
38 SYCCPNC77       84.0%  13.8%     -----------------AILSWMLVPIFYR-----------------ERLLGMMEFHHCG--------------------    
39 FHLAECOLIb      82.9%   7.6%     ----------------NQIQTLCLLPLMSG-----------------DTMLGVLKLAQC---------------------    
40 NIFA_BRAJA      84.0%  11.5%     ----------------SIPVAFIGVPIRVD-----------------STVVGTLTIDRI---------------------    
41 NIFA_RHIME      80.7%   7.7%     ------------------PTAFIAAAVEVD-----------------HETGGMLWFECA---------------------    
42 D89625a         85.6%  13.0%     --------------AAADIRSSLVVPLICQ-----------------QELMAVLALHQC---------------------    
43 D908232         80.7%   7.7%     ------------------ITTFLSTPIHLP----------------DGSFYGTLCAASS---------------------    
44 D9090221        80.7%  10.6%     -------------------DGVLIIPIRPQKP------------HQEDCLWGQLVVRVG---------------------    
45 D909034         82.9%  10.9%     ------------------VKSFLAVRTSYQ-----------------GKANGIIALHQC---------------------    
46 D9090461c       81.8%  13.7%     ------------------IRAFLTVPVFVG-----------------EQLWGLLGAYQN---------------------    
47 D90905          82.3%   7.5%     ------------------AIACYNTPILSH-----------------QEEVGRLYIFSQ---------------------    
48 D9090516        79.0%   6.6%     ------------------VRFYAGHPLKIL----------------DNIHVGTLCVYDT---------------------    
49 D9090517        79.0%   6.6%     ------------------IRFYAGYPLNLG----------------QDIHVGTLCAIDR---------------------    
50 D9090585        81.2%  15.1%     ------------------SQSRIVAPIVFD-----------------HSLWGLLIVHQC---------------------    
51 D90905111       80.7%  15.8%     ------------------VRANLVLPLIND-----------------AILWGLLCIHQC---------------------    
52 D9090888        79.6%  12.7%     ------------------VKSLLAIPLATL-----------------DGRLGMIVVHHC---------------------    
53 D9091253        81.8%  13.5%     ------------------VRAKLVAPIIVE-----------------GQLWGLLIAHQC---------------------    
54 D9091616_       81.2%  12.6%     ------------------IRSYLGTPLLTR----------------DGVCLGTLAALDF---------------------    
55 D90916105       84.5%  14.1%     ------------------VKSKLVVPILQHNRASS-----LDNESEFPYLWGLLITHQC---------------------    
56 FDU59741        85.1%  16.6%     ------------------IKAKLIVPIVQNLNA-----------NSQNQLWGLLIAHQC---------------------    
57 MXU37008        83.4%   7.2%     ------------------ARSYMIVPLRAR-----------------GHTLGAVNFVSS---------------------    
58 RSPNGR2341      82.9%   7.1%     ---------------GTGQVTFIGVPMKAD-----------------QETLGTLWIDRA---------------------    
59 SYCORF440       81.8%   7.0%     ------------------AIACYNTPILSH-----------------QEEVGRLYIFSQ---------------------    
60 SYCSLLE96a      90.1%  22.9%     S-------CHIQYLLAMGVLSSLTVPVMQD-----------------QQLWGIMAVHHS---------------------    
61 SYCSLLE96c      81.8%  16.8%     ------------------VKANLVVPVVFN-----------------ENLWGLLIAHEC---------------------    
62 SYCSLLLH        80.7%   7.1%     ------------------IGAYVGVPITYG----------------NGSLFGTLCAIDP---------------------    
63 SYCSLLLH8       79.6%  13.4%     ------------------VKASLTVPLHRD-----------------NYPLGLLMAHHC---------------------    
64 SYCSLLLH8b      81.8%  15.7%     ------------------VKANLVAPINYK-----------------GNLLGLLIAHQC---------------------    
65 SYCSLRG61_      79.0%   5.9%     ------------------IRGFAGYPLVGH-----------------DRVIGVLAVFSE---------------------    
66 CNRCHUMANb      84.0%   7.8%     ------------------IKNVLSLPIVNK----------------KEDIVGVATFYNR---------------------    
67 ETR1_ARATH      81.2%   7.2%     ----------------LGEVVAVRVPLLHLSNFQIN---DWPELSTKRYALMVLMLPSD---------------------    
68 NIFA_RHOCA      84.5%  10.3%     ----------------DAGQTLIAVPLRDP--------------ERSHFVLGVLAAYRS---------------------    
69 PHYB_ORYSA     100.0%  69.1%     STLRSPHGCHGQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHT---------------------    
70 PHYD_ARATH     100.0%  68.9%     STLRAPHGCHAQYMTNMGSIASLAMAVIINGNEE-DGNGVNTGGRNSMRLWGLVVCHHT---------------------    
71 PHY_CERPU      100.0%  62.1%     STLRAPHGCHAQYMGNMGSIASLVMAVIINDNE----EYSRGAIQRGRKLWGLVVCQHT---------------------    
72 Y07I_MYCTU      84.5%   9.9%     ---------LIEEARGVPVTSAAAVPLVSG-----------------EITTGLLGFIKF---------------------    
73 D9082613        80.7%  11.2%     ------------------SNSEIVLPLVVK-----------------NQIIGVLDIDST---------------------    
74 D9087716        83.4%   7.1%     ----------------NGCESALLIPLTFG-----------------NHTPGALLLAHT---------------------    
75 D9090521        81.2%  12.5%     ------------------ADKRLVLPLVYG-----------------EEMVGLLVIHRS---------------------    
76 D90908115       77.3%   7.1%     ------------------PQESLCIPLIAQ-----------------GETLGLLNLCSD---------------------    
77 D90910124       80.7%   5.4%     ------------------LARLISVPVIDD-----------------GKVVMLTGVGNK---------------------    
78 D9091257        77.9%   7.7%     ------------------LGGLWIFPTLYQ-----------------DQANGYLCLQQV---------------------    
79 ECOFHLAb        81.2%   6.0%     -----------------GATDSNLVPVTAD---------------VWRHHAGRAETGAM---------------------    
80 SYCCPNC67       95.0%  35.6%     ---RSAYHCHLTYLKNMGVGASLTISLIKD-----------------GHLWGLIACHHQ---------------------    
81 SYCSLRA62       86.2%  11.0%     -------FRASPLLHNLGIVSGINLMVAGP-----------------RTAFGVLGVYSL---------------------    
82 SYCSLRG10       77.3%   7.7%     ------------------PLASLCIPLIAQ-----------------GETLGLLFLCTF---------------------    
83 FHLAECOLIa      81.8%   7.7%     -----------------KFGHYCLMPLAAE-----------------GHIFGGCEFIRY---------------------    
84 YEHU_ECOLI      77.3%   6.9%     ------------------LGSTLVIPLRGE----------------NQRVMGTIKLYEA---------------------    
85 YNTC_AZOCA      83.4%  11.5%     ------------------VVTFLTEPVMVH-----------------GRWWGHFCVDTP---------------------    
86 ASU14596        76.8%   6.1%     ------------------HGHVMTGPIICD-----------------GRLIGTLNFARD---------------------    
87 D9090461a       82.3%  14.9%     --------------RTLGIKSLLHLPLVIN-----------------QRHWGVLSLQYL---------------------    
88 D9091186        79.6%   8.8%     -----------------LVKSILVVPMVKD-----------------AQVLGYISMVHL---------------------    
89 SYCSLLE96b      90.6%   8.3%     PPESLSAEN---------FQSFLIVPLAAD-----------------QQWVGSLILLRKEKSLVKHWAGKRGIDRRNILP    
90 ATAC000104      82.3%   8.5%     KS---------------GPTVGIRVPMLRV--CNFKGGTPEAIHMCYAILVCVLPLRQP---------------------    
91 BSZ752086       75.1%  11.6%     ------------------LHAAIVLPLTSN-----------------GNTIGTLKMYFK---------------------    
92 SSU70379        83.4%   6.0%     THD---------------HEHIMTGPLVGQ-----------------GQLIGTINFARI---------------------    
   consensus/100%                   ..........................h........................h.h.h........................    
   consensus/90%                    ....................s.hhhPlh...................t.hhuhh.h.t......................    
   consensus/80%                    ...................hshlshPlh.t.................tphhGhl.h.p......................    
   consensus/70%                    ..................htshlshPlh.t.................tphhGhlhhhpt.....................    

                     cov    pid 241          :         .         .         .     ] 286
 1 PHYE_ARATH     100.0% 100.0%     --------SPRYVPFPLRYACEFLMQAFGLQLQMELQLASQLAEKK    
 2 D89623b         81.8%  14.8%     ------------QQGSFTASDEEFMRAFNIQAGVALENARLFENVL    
 3 D89624b         84.5%  14.1%     --PETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVK    
 4 D89623a         82.3%   9.1%     -----------TGNIPFNRNDEESFRDFAASIGIILETCQSFYVAA    
 5 D89624a         84.5%  14.6%     --PPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIAT    
 6 CNRABOVINa      82.9%   5.2%     -----------VDGPHFTENDEEILLKYLNFANLIMKVFHLSYLHN    
 7 CNRBBOVINa      82.9%   5.8%     -----------LDGPCFTSEDEDVFLKYLNFGTLNLKIYHLSYLHN    
 8 CNRCHUMANa      82.9%   8.4%     -----------VNASEFSKQDEEVFSKYLNFVSIILRLHHTSYMYN    
 9 VNFA_AZOVI      83.4%   8.2%     -----------YDNAELLKLDVEVLSILATTTAQAVELYLVENVEN    
10 RCANFTAN        82.9%  11.5%     -----------YLNQRLLKQDAEFLAAIALMIAPTVELYLIANVEK    
11 CNRABOVINb      84.0%  10.1%     -----------KDGKPFDEMDETLMESLTQFLGWSVLNPDTYELMN    
12 CNRBBOVINb      84.0%  10.1%     -----------KDGKPFDEQDEVLMESLTQFLGWSVLNTDTYDKMN    
13 CN2A_RATb       81.2%  10.9%     -----------INGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVN    
14 A48719          84.0%  10.0%     ---------KSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSL    
15 CN2A_RATa       81.2%   9.9%     -----------LGGDFFTDEDERAIQHCFHYTGTVLTSTLAFQKEQ    
16 A48719-2        86.2%   8.3%     -------EETTGKVKAFNRNDEQFLEAFVIFCGLGIQNTQMYEAVE    
17 YNE6_CAEEL      80.7%  12.7%     -------------ENGFSRHDEKYIKRFSYFVANSIAHAILAKQIE    
18 MTCY3A225       81.2%  12.6%     -----------TNGQPFSDDDEVLVQALAAAAGIAVANARLYQQAK    
19 D9090445        80.7%  13.6%     ------------QVNHFTPACATAMEKTAELIALVLNNARIQTKHK    
20 PT1P_ECOLI      81.2%  10.4%     ------------ELRQYDESEESFLVTLATQMAAILSQSQLTALFG    
21 ANFA_AZOVI      82.3%   9.3%     -----------YMNPRLLKQDVELLTMIATMIAPLVELYLIENIER    
22 NIFA_AZOBR      83.4%   7.7%     ---------SDEGPQGHFGSDVRFLTMVANLIGQTVRLHRTVAEER    
23 NIFA_AZOCA      83.4%   7.1%     ---------WDGTARFRFDEDVRFLTMVANLVGQTVRLHKLVASDR    
24 NIFA_AZOVI      81.2%   9.1%     -----------CRADEHMPARTRFLEIVANLLAQTVRLVVNIEDGR    
25 NIFA_ENTAG      81.8%   7.6%     -----------ALHEDRLAASTRFLEMVANLISQPLRSATPPESLP    
26 NIFA_HERSE      82.9%   9.3%     ----------GQSPSRSVDHEVRLLTMVANLIGQTVRLYRSVAAER    
27 NIFA_KLEPN      81.8%   6.5%     -----------ARQEERLPACTRFLETVANLIAQTIRLMILPTSAA    
28 NIFA_RHIET      83.4%   4.9%     ----------NDAAPFPADEDVRFLTMVANLVSRTIRLHRFLNLEG    
29 YGAA_ECOLI      81.2%   7.1%     ------------QPDQFDVFSDEELRLIAALAAGALSNALLIEQLE    
30 S25203          83.4%   9.3%     ------------QVRHLTPNEVTLLCSLADLAAVAIERNRLVEELH    
31 D89625b         82.3%   7.5%     -----------KRARQWLSADIELAKAVAAQAAIAVQQSHLYQKTR    
32 D89626          83.4%  10.0%     --------LSSYHWERDGEEELSFFSALANLVASSVQRWLLAEKLK    
33 D9090278        77.3%   9.4%     ------------QVKHFDSSDLNLFSTLTGQVAAAIRTAQYYETIK    
34 D9090461b       81.2%  15.1%     -----------DGPRVWESSDIEFALKIALNLGVALQQAELLTESQ    
35 D90914106       79.0%   8.8%     ------------EAGFFSEDEQDLLQEISDNLSFALDAIQLDQANQ    
36 KPNNIFLA2       81.8%   5.4%     -----------ARQEERLPACTRFLETVANLIAQTIRLMILPTSAA    
37 RHMNIFAX        82.3%   4.3%     ----------NDAAPFPADEDVRFLTMVANLVSRTIRLHRFLNLEG    
38 SYCCPNC77       84.0%  13.8%     -----------PAPTEWEDDALTLVEGVATQIGVALIQAESYANLQ    
39 FHLAECOLIb      82.9%   7.6%     ------------EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH    
40 NIFA_BRAJA      84.0%  11.5%     ----------PEGSSSLLEYDARLLAMVANVIGQTIKLHRLFAGDR    
41 NIFA_RHIME      80.7%   7.7%     -----------EESDYDYEEEVHFLSMAANLAGRAIRLHRTISRRE    
42 D89625a         85.6%  13.0%     -----------SQARVWGEEEVQLVLMVADQAALALSQAYAYEQVR    
43 D908232         80.7%   7.7%     ------------EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR    
44 D9090221        80.7%  10.6%     -----------DQKRSWLPWEIEFLCHLSSQVAIAIQQSALFAQVH    
45 D909034         82.9%  10.9%     -----------DRQRVWTADEIELLEAIAEQMGIALAQAALLEKER    
46 D9090461c       81.8%  13.7%     -----------GAPRHWQAREIHLLHQIANQLGVAVYQAQLLARFQ    
47 D90905          82.3%   7.5%     -----------DRNYSWTPTRRKLLQLISDQTAVAIANSDLNQKLR    
48 D9090516        79.0%   6.6%     ------------KPREISDDDVQFLEDLAITVANELKAHMFKRFFT    
49 D9090517        79.0%   6.6%     ------------VPRELSAEEQEILYDLSKMVESELAAIALSEAQI    
50 D9090585        81.2%  15.1%     -----------SSSRTWQTAEIQLMQSLGNQLAIAIQQSLLYERLQ    
51 D90905111       80.7%  15.8%     -----------DSSRVWEQTEIDLLKQITNQFEIAIQQATLYEQAQ    
52 D9090888        79.6%  12.7%     -----------QQPRHWQKAEVRLLEQLATQVAIAIQQAQLYQRVQ    
53 D9091253        81.8%  13.5%     -----------HHPRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQ    
54 D9091616_       81.2%  12.6%     ------------SPHDFREPDVALMNMTARWCMGEIEHQACLAANQ    
55 D90916105       84.5%  14.1%     -----------AFTRPWQPWEVELMKQLANQVAIAIQQSELYEQLQ    
56 FDU59741        85.1%  16.6%     -----------DSVRQWVDFELELMQQLADQISIALSQAQLLGRLE    
57 MXU37008        83.4%   7.2%     -----------GSGRGYGPDDLALAEELCLRARLAIDNARLVGESR    
58 RSPNGR2341      82.9%   7.1%     --------KDGAATRTQFEEEVRFLSMVANLAARAVRLNGHESRDS    
59 SYCORF440       81.8%   7.0%     -----------DRNYSWTPTRRKLLQLISDQTAVAIANSDLNQKLR    
60 SYCSLLE96a      90.1%  22.9%     ------------KPRRFTEQEWETMALLSKEVSLAITQSQLSRQVH    
61 SYCSLLE96c      81.8%  16.8%     -----------KTPRYWQEEDLQLLMELATQVAIAIHQGELYEQLE    
62 SYCSLLLH        80.7%   7.1%     -----------EIQPDSLVDELPLVELIAQLLSTILDFFLKAEIAS    
63 SYCSLLLH8       79.6%  13.4%     -----------QRPHQWEMRERQFLQQLTEELQTTLDRANLIQERN    
64 SYCSLLLH8b      81.8%  15.7%     -----------SGPRDWHQNEIDLFGQLTVQVGLALERSDLLAQQK    
65 SYCSLRG61_      79.0%   5.9%     --------------APFVAEFLEVLQVLCMAVAIAIDAVRQLQSET    
66 CNRCHUMANb      84.0%   7.8%     -----------KDGKPFDEHDEYITETLTQFLGWSLLNTDTYDKMN    
67 ETR1_ARATH      81.2%   7.2%     ------------SARQWHVHELELVEVVADQVAVALSHAAILEESM    
68 NIFA_RHOCA      84.5%  10.3%     ---------HDHNRSGFSDADVRVLTMVASLLGQALRPRRRMARDR    
69 PHYB_ORYSA     100.0%  69.1%     --------SPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKH    
70 PHYD_ARATH     100.0%  68.9%     --------SARCIPFPLRYACEFFMQAFGLQLNMELQLALQVSEKR    
71 PHY_CERPU      100.0%  62.1%     --------SPRTVPFPLRSVCEFLMQVFGMQLNLHVELAAQLREKH    
72 Y07I_MYCTU      84.5%   9.9%     ------------GDRKWHEAELNALMTIATLFAQVQARVAAEARLR    
73 D9082613        80.7%  11.2%     ------------VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA    
74 D9087716        83.4%   7.1%     ------------SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT    
75 D9090521        81.2%  12.5%     -------------QGQWHGEEMMQLEAIAKSLAVACLLDQQQDWYR    
76 D90908115       77.3%   7.1%     ------------RAGVISSDQQQLAKAVAEQVSLAIANIKLRERLE    
77 D90910124       80.7%   5.4%     -------------DVFYTDQDVETVQLISNEIWRIARSRRLVKKLT    
78 D9091257        77.9%   7.7%     ----------GPAPGPWHPETEALLQELAEQTGTAIAHATLYQELT    
79 ECOFHLAb        81.2%   6.0%     ------------RRESVYHYQSEFTRQIAERVAIAVDNALAYQEIH    
80 SYCCPNC67       95.0%  35.6%     --------TPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQ    
81 SYCSLRA62       86.2%  11.0%     ------------TARKFTEEEIEFLKVASHILAAAIDRQEYEERLL    
82 SYCSLRG10       77.3%   7.7%     ------------KGEILPDIRQQLAKTVAEQLALAIANLKLREQLE    
83 FHLAECOLIa      81.8%   7.7%     ------------DDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNN    
84 YEHU_ECOLI      77.3%   6.9%     ------------KNRLFSSINRTLGEGIAQLLSAQILAGQYERQKA    
85 YNTC_AZOCA      83.4%  11.5%     -----------DAEHEWTAVERQAFKCIAAVLAGLLARSGTEGLVS    
86 ASU14596        76.8%   6.1%     -----------KGKPAFTANDLADLSALCIHLSAKLATLKTNPNIF    
87 D9090461a       82.3%  14.9%     -----------HQARPWPLEDQQFAQRIAHLFCLGLMKTELWIHCQ    
88 D9091186        79.6%   8.8%     -----------HDNYGWNPEELNLAKLVGQFLAIAQARHQAETTLT    
89 SYCSLLE96b      90.6%   8.3%     RLSFEAWEETQKLVPTWNRSERKLAQVASTQLYMAITQQFVTRLIT    
90 ATAC000104      82.3%   8.5%     --------------QAWTYQELEIVKVVADQVAVAISHAVILEESQ    
91 BSZ752086       75.1%  11.6%     ------------SPAGLSQVEEELAEGLAMLFSTQLELGEAELQSK    
92 SSU70379        83.4%   6.0%     -----------GHIPAFNHLELASLGAVCTHFSARLAELRKPHSVS    
   consensus/100%                   ........................h..h...h..............    
   consensus/90%                    ................h...p..hht.hs..ht..lt........t    
   consensus/80%                    ................h..tp.phhp.hst.huhtlt...h.t..p    
   consensus/70%                    ............tst.aptt-.phhphlup.huhslpttthhpphp