cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 GTH1_CORAU/1-1 100.0% 100.0%    CRYGCRLNNMTITVEREDCHGSITI--TTCAGLCETTDLNYQSTWL--PRSQGACNFKEWSYEEVYLEGCPP-GANPFFI    
 2 Q98848/1-107   100.0%  47.7%    CRSSCRLTNISITVESEECGSCITIDTTACAGLCKTQESVYRSPLM--LSYQNTCNFREWTYETYEFKGCPARADSIFTY    
 3 GTH1_THUOB/1-9  91.3%  39.6%    CSYGCHPKNISISVE--SCGITEFILTTICEGQCYLEDPVYIS-----HDEQKICN-GDWSYEVKHIEGCP----VGVTY    
 4 Q91120/1-100    94.2%  37.7%    CSFGCHPTNISIQVE--SCGLTEVIYTTICEGQCYHEDLVYISHYE--RPEQRICT-GDWSYEVKHIKGCP----VGVTY    
 5 GTH1_FUNHE/1-9  93.3%  36.2%    GCFGCHLKNVSIPMER--CGQRVCIHTTICEGLCFSEDAVFESPDE--APEHRVCN-GDWSYEVKHIQGCP----ESITY    
 6 FSHB_BOVIN/1-1 100.0%  42.1%    CCRSCELTNITITVEKEECGFCISINTTWCAGYCYTRDLVYRDPAR--PNIQKTCTFKELVYETVKVPGCAHHADSLYTY    
 7 G2738515/1-107 100.0%  42.1%    WCNGCMLTNITISVEREECEFCISINTTWCSGYCHTRDLVYKDPIR--PNVQKTCTFKEFVYETVNLPGCAKQADSLYSY    
 8 FSHB_STRCA/1-1  96.2%  39.8%    ----CELTNITIAVEREECELCITVNATWCSGYCFTRDPVYKYPPV--SEVQQTCTFKEVVYETVKIPGCRDHAESLYSY    
 9 LSHB_BALAC/1-1 100.0%  26.2%    LRPLCRPINATLAAZBZACPVCITFTTSICAGYCPSMVRVLPAALP--PVPZPVCTYRZLRFASIRLPGCPPGVBPMVSF    
10 LSHB_SHEEP/1-1 100.0%  31.8%    LRPLCQPINATLAAEKEACPVCITFTTSICAGYCLSMKRVLPVILP--PMPQRVCTYHELRFASVRLPGCPPGVDPMVSF    
11 G2738807/1-107 100.0%  31.8%    LRPLCRPTNATLAAESDACPVCVTFTTTICAGYCPSMVRVLPAALP--PGPQLVCTYRELSFSSIRLPGCPPGVDPIFSF    
12 CGHB_CALJA/1-1 100.0%  30.8%    LRPLCRPVNAILAAEKEGCPVCVAFNTTICAGYCSSMVRVLQTILP--PLPQSVCNYHELRFTSVRLPGCRPGVDPVVSM    
13 CGHB_HUMAN/1-1 100.0%  33.6%    LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSY    
14 LSHB_COTJA/1-1 100.0%  32.7%    GRPPCRPINVTVAVEKEECPQCMAVTTTACGGYCRTREPVYRSPLG--PPPQSSCTYGALRYERWDLWGCPIGSDPKVIL    
15 LSHB_STRCA/1-1 100.0%  30.8%    SRPPCRPVNVTVAAEKDECPQCLAVTTTACGGYCRTREPVYRSPLG--GPAQQACGYGALRYERLALPGCAPGADPTVAV    
16 GTH2_ANGAN/1-1 100.0%  32.7%    LLLPCEPINETISVEKDGCPKCLVFQTSICSGHCITKDPSYKSPLS--TVYQRVCTYRDVRYETVRLPDCRPGVDPHVTF    
17 GTH2_CORAU/1-1 100.0%  30.8%    LMQPCQPINQTVSLEKEGCPTCLVIQTPICSGHCFTKELVFKSPFS--TVYQHVCTYRDVRYETICLPDCSPWVDPHVTY    
18 GTH2_FUNHE/1-1 100.0%  29.9%    QLPRCQLLNQTISLEKRGCSGCHRVETTICSGYCATKDPNYKTSYN--KAIQHVCTYGDLYYKTFEFPECVPGVDPVVTY    
19 GTH2_THUOB/1-1 100.0%  30.8%    QLPPCQLINQTVSVEKEGCASCHPVETTICSGHCITKDPVIKIPFS--KVYQHVCTYRDFYYKTFELPDCPPGVDPTVTY    
20 LSHB_RANCA/1-1  99.0%  35.8%    -RHVCHLANATISAEKDHCPVCITFTTSICTGYCQTMDPVYKTALS--SFKQNICTYKEIRYDTIKLPDCLPGTDPFFTY    
21 TSHB_BOVIN/1-1 100.0%  33.9%    AMSFCIPTEYMMHVERKECAYCLTINTTVCAGYCMTRDVNGKLFLPKYALSQDVCTYRDFMYKTAEIPGCPRHVTPYFSY    
22 G2660745/1-109 100.0%  35.8%    TASVCAPSEYTIHVEKRECAYCLAINTTICAGFCMTRDSNGKKLLLKSALSQNVCTYKEMFYQTALIPGCPHHTIPYYSY    
23 TSHB_ONCMY/1-1 100.0%  28.8%    AVPMCVPTDYTLYEERRECDFCVAINTTICMGFCYSRDSNMKELAGPRFLIQRGCTYDQVEYRTVILPGCPLHANPLFTY    
24 O13049/1-110   100.0%  28.2%    AMPMCAPTEYTIYIERQECNYCVAVNTTICMGFCFSRDSNVKELVGARFLVQRGCTYHEVEYRMAILPGCPSHADPHFIY    
25 TSHB_ANGAN/1-1 100.0%  27.3%    VLSICSPVDYTLYVEKPECDFCVAINTTICMGFCYSLDPNVVGPAVKRLVVQRGCTYQAVEYRTAELPGCPPHVDPRFSY    
   consensus/100%                  ....C...p..h......C..p..h..shC.G.C.....sh.............Cs.t.h.at.h.h.tC.......h.h    
   consensus/90%                   ....C..hp.ol.hE..tC..shsh.TohC.GhC.o...sh..........Q.hCs.tth.ap.h.l.sC.....shh.h    
   consensus/80%                   hh..Cp.hNholtsE+ptCshClshpTThCtGaC.oh-.sh.t.h......QpsCsat-h.Ycshpl.GCs.tstshhoa    
   consensus/70%                   hh..Cp.hNhTlssE+ctCshClslpTTlCuGaChop-.shps.h......QpsCTac-hpYcohclPGCs.tssshhoa    

                     cov    pid 81          .         1         .] 111
 1 GTH1_CORAU/1-1 100.0% 100.0%    PVAKSCDCIKCKTDNTDCDRISMA--TPSCV    
 2 Q98848/1-107   100.0%  47.7%    PVALSCECSKCNSDITDCGVLSQQ--TLGCN    
 3 GTH1_THUOB/1-9  91.3%  39.6%    PVARNCECTACNTGNTYCGRLPGY--VPSCP    
 4 Q91120/1-100    94.2%  37.7%    PVARNCECTTCNTENTACGRFPED--IPSCL    
 5 GTH1_FUNHE/1-9  93.3%  36.2%    PVATNCYCSACNTKDTYCTRLYAH--IPSC-    
 6 FSHB_BOVIN/1-1 100.0%  42.1%    PVATECHCSKCDSDSTDCTVRGLG--PSYCS    
 7 G2738515/1-107 100.0%  42.1%    PVATACHCGSCDTDSTDCTVRGLG--PSYCS    
 8 FSHB_STRCA/1-1  96.2%  39.8%    PVATECHCETCDTDSTDCTVRGLG--PSYCS    
 9 LSHB_BALAC/1-1 100.0%  26.2%    PVALSCHCGPCRLSSSBCGPGRAZ--PLACB    
10 LSHB_SHEEP/1-1 100.0%  31.8%    PVALSCHCGPCRLSSTDCGGPRTQ--PLACD    
11 G2738807/1-107 100.0%  31.8%    PVALSCSCGSCRLSHSDCGGPRAR--PHLCT    
12 CGHB_CALJA/1-1 100.0%  30.8%    PVALSCRCGLCRRSYSDCGSLRNE--PLGCD    
13 CGHB_HUMAN/1-1 100.0%  33.6%    AVALSCQCALCRRSTTDCGGPKDH--PLTCD    
14 LSHB_COTJA/1-1 100.0%  32.7%    PVALSCRCARCPIATSDCTVQGLG--PAFCG    
15 LSHB_STRCA/1-1 100.0%  30.8%    PVALSCRCARCPMATADCTVAGLG--PAFCG    
16 GTH2_ANGAN/1-1 100.0%  32.7%    PVALSCDCNLCTMDTSDCAIQSLR--PDFCM    
17 GTH2_CORAU/1-1 100.0%  30.8%    PVALSCDCSLCNMDTSDCTIESLQ--PDLCM    
18 GTH2_FUNHE/1-1 100.0%  29.9%    PVALSCRCGGCAMATSDCTFESLQ--PDFCM    
19 GTH2_THUOB/1-1 100.0%  30.8%    PVALSCHCGRCAMDTSDCTFESLQ--PDFCM    
20 LSHB_RANCA/1-1  99.0%  35.8%    PVALSCYCDLCKMDYSDCTVESSE--PDVCM    
21 TSHB_BOVIN/1-1 100.0%  33.9%    PVAISCKCGKCNTDYSDCIHEAIK--TNYCT    
22 G2660745/1-109 100.0%  35.8%    PVAISCKCGKCNTDYSDCVHEKVR--TNYCT    
23 TSHB_ONCMY/1-1 100.0%  28.8%    PVALSCHCGTCNTDSDECAHKASSGDGARCS    
24 O13049/1-110   100.0%  28.2%    PVALSCHCSTCNTNSDECAHKTNN-AGMKCS    
25 TSHB_ANGAN/1-1 100.0%  27.3%    PVALHCTCRACDPARDECTHRASA-DGDRCS    
   consensus/100%                  sVAhtC.C..C..t.s.C...........C.    
   consensus/90%                   PVAhpCpCt.Ct.s.s.Csh...t..s..C.    
   consensus/80%                   PVAhsCcCshCphspo-Csh.t.t..s.hC.    
   consensus/70%                   PVAlSCcCutCshssoDCsh.s.t..sshC.