cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 Y568_METJA/1-1 100.0% 100.0%    KTTELAKLLNIKPSAVTNMAKKLHRLGYVNYEPYIGITLTEKGIEEAKKILDKHKTIKIFLVEFLGLDEKTASEEACKLE    
 2 O26316_spt/1-1  99.0%  35.6%    TTTDISREMKIAPASVTQMLKKLDSNGYVKYSPYRGAVLTDRGYRIARRITRKHRLLERFLHDVLGIKRERIHRQACEME    
 3 O28489_spt/1-1 100.0%  38.6%    KTGELAKILNVKPSSVTEMLIKLRDMGYVDYQPYKGAKLTRKGEELARRIKKYYLALYHFFKDYLGIQDELAEKLSCELE    
 4 O30276_spt/1-9  98.0%  38.6%    KVMELSEVLNVKPATVSEMLEKLSRMGYVEYKKRSHVKLTEKGVREAMKLREK-RNVVIKFLKAIGVPEDVAERDACTIE    
 5 CAB49983_s/1-1 100.0%  33.7%    RVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRITLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFE    
 6 O27019_spt/1-1  99.0%  34.7%    KTSDLSSRMNVRPASVTQMLKRLHEMGLVIYHPYLGAELTDEGREIAEMVLRRHMILECFFHNVLGMDLDSSYEEASRMK    
 7 YQHN_BACSU/1-1  99.0%  30.7%    RVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVYRHELLDQFLR-IIGVDEEKIYNDVEGIE    
 8 P72424_spt/1-1  99.0%  34.7%    SNKKLSQFLNIKPPSVSEMVGRLEKEGYVETKHYKGARLTEEGLKQTLDIIKRHRLLELFLIEILQYNWEEVHQEAEILE    
 9 AAF12080_s/1-1  99.0%  33.7%    STQALAAALGVAPASVTGMLRKLTEQGLVSHAPYQGARLTAEGERVALEVLRHHRLLELFLHRALGVPLDEVHDEAEALE    
10 P96120_spt/1-1  99.0%  33.7%    GTGELSRLLHVTPGTISTMVKRLEKGGYVQRTHRLGCTLTRKGAVFGSAVLRKHRLLESFLSQVLCLEAGVVHKEAEMLE    
11 AAF25184_s/1-1  99.0%  33.7%    TNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLE    
12 CAB57634_s/1-1  99.0%  31.7%    KVSELISIFNISPGTISKALNKLEKLGLVERTNDRKIKLTEEGKRIAERLIKSHRLSERLLTDIVGVDWIRAHELAHRLE    
13 Q9WYY0_spt/1-1 100.0%  30.7%    RVSTIARKMGVSLPSVTNAMKRLAELGYVEYEKYGYITLTEKGKRRARSLRGSQNRLRNFFFYVMGIPSPTAEKLSRHFS    
14 O33330_spt/1-1  99.0%  30.7%    STKMLAERIGVSASTASESIRKLAEQGLVDHEKYGAVTLTDSGRRAALAMVRRHRLLETFLVNELGYRWDEVHDEAEVLE    
15 P75787_spt/1-1  99.0%  27.7%    RQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFLL-VLGVSPEIARRDAEGME    
16 DTXR_CORDI/1-1  99.0%  24.8%    LRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWE    
17 Q54804_spt/1-1  99.0%  24.8%    MRARIAERLDQSGPTVSQTVARMERDGLVSVAPDRHLELTEEGRRLATRVMRKHRLAECLLVDVIGLEWEQVHAEACRWE    
18 Q50379_spt/1-1  99.0%  25.7%    LRARIAERLDQSGPTVSQTVSRMERDGLLHVAGDRHLELTDKGRALAVAVMRKHRLAERLLVDVIGLPWEDVHAEACRWE    
19 Q9WZ71_spt/1-1  99.0%  28.7%    RLKRVSDFLKVKMPSAKQILEDLASKKLINYVRRGPISLTKKGTELAQKELERFNNLKEFLKKILFLDEEEAEKGAWEIF    
20 Q9YFV8_spt/1-9  98.0%  25.7%    RFIKIARLLDVSPSTVSIMTRRLQMKGLVELIPNMGVRLTEQGLKILSNYLWKSAILEVLLARA-GVDIDNCRGMGLRMA    
21 O29994_spt/1-9  95.0%  29.7%    MAEEEGKRLKVD-SVETEALEELKREGLLTVDG-GIIKLTDKGRKKAEKIVRLHRLAERLLSDILGF--KDVEEHACKFE    
22 O28295_spt/1-9  96.0%  23.8%    GPTQVAEELGVSKSTAQKMLNELSKAGYGVYVPKKGLVLNERGKMEARAAVRMHRLIECLLADL-GV--EDFCKEAEKIG    
23 Q9Z8J6          98.0%  21.8%    VCSYKYQEYFGPKPFPRWRVQILEWRGYVKKEQ-DYYRLTKKGRSEALRLVRAHRLWESYLVNSLDFSKESVHELAEEIE    
   consensus/100%                  ......t.h....s.....h..h...thh.h.....h.hs..G...h...h........hh.....h......t.s..h.    
   consensus/90%                   ...thup.ht.t.sshpthhtchtt.thl.h....hh.LTtpG.t.s.thhth..hhp.hhh.hhsh..t.hpt.up.ht    
   consensus/80%                   hhtpluphhtlp.sossphlp+Ltp.Ghl.ht..tth.LTccGhp.u.thhcpaphhc.hhhphlGh..c.scp.Apthc    
   consensus/70%                   tstcluphltlpssolophlp+Lpc.Ghlpht..tthpLTccGtchApplhc+Hpll-phLhphlGl..-psccpApthE    

                     cov    pid 81          .         1] 101
 1 Y568_METJA/1-1 100.0% 100.0%    HALSDEILERLKIFMEKFKDK    
 2 O26316_spt/1-1  99.0%  35.6%    HSLSDDAERALCHLLN-MPGE    
 3 O28489_spt/1-1 100.0%  38.6%    HHITEDAFVRVCRIISGNCEV    
 4 O30276_spt/1-9  98.0%  38.6%    HVLHPETLRQLRNFVR-FVES    
 5 CAB49983_s/1-1 100.0%  33.7%    HYVSEVTVQRIREFISYIQEH    
 6 O27019_spt/1-1  99.0%  34.7%    HELFRETELALMRYLR-NPAR    
 7 YQHN_BACSU/1-1  99.0%  30.7%    HHLSWNSIDRIGDLVQYFEED    
 8 P72424_spt/1-1  99.0%  34.7%    HRISDLFVERLDKILN-FPKT    
 9 AAF12080_s/1-1  99.0%  33.7%    HALSERLEARIAAWLG-DPTH    
10 P96120_spt/1-1  99.0%  33.7%    HACSDELIDVIDRYLQ-YPTR    
11 AAF25184_s/1-1  99.0%  33.7%    HTVSDHFVERLDQLLD-YPKA    
12 CAB57634_s/1-1  99.0%  31.7%    HIWPDDILERIDRLLG-YPTT    
13 Q9WYY0_spt/1-1 100.0%  30.7%    HFLDTKTRERFKRFYDIMVNF    
14 O33330_spt/1-1  99.0%  30.7%    HAVSDRLMARIDAKLG-FPQR    
15 P75787_spt/1-1  99.0%  27.7%    HHVSEETLDAFRLFTQKHGAK    
16 DTXR_CORDI/1-1  99.0%  24.8%    HVMSDEVERRLVKVLK-DVSR    
17 Q54804_spt/1-1  99.0%  24.8%    HVMSEAVERRVLELLR-HPTE    
18 Q50379_spt/1-1  99.0%  25.7%    HVMSEEVERRLVQVLE-NPTT    
19 Q9WZ71_spt/1-1  99.0%  28.7%    FNLEESIADRVVDFMN-FLTH    
20 Q9YFV8_spt/1-9  98.0%  25.7%    EGLSDEDAWILYKVLG-EPKY    
21 O29994_spt/1-9  95.0%  29.7%    HLIDDEAEEAICTLLG-HPQV    
22 O28295_spt/1-9  96.0%  23.8%    MVAGSSLVDALEARYG-DREF    
23 Q9Z8J6          98.0%  21.8%    HVLTEELDHTLTEILN-DPCY    
   consensus/100%                  ..h.......h..hht...t.    
   consensus/90%                   a.htpth..tl.thht...t.    
   consensus/80%                   Hhhscph.ttl.thht...ph    
   consensus/70%                   Hhls-ch.ctltphlp..spt