cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 ICLR_SALTY     100.0% 100.0%    VQSLTRGLKLLEWIAESN-GTVALTELAQQAGLPNSSTHRLLTTMQQQGFVRQVGELGHWAVGPHAFIVGSSFLQSRNLL    
 2 YBBU_ECOLI     100.0%  34.1%    AQALERGIAILQYLEKSG-GSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVL    
 3 YIAJ_HAEIN     100.0%  30.8%    NQALIRGLRLLDILSNYP-NGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLTIKCLSIGQKVLSSMNII    
 4 O87190         100.0%  29.7%    SQSLFRGLQLIEILSDYP-NGCPLARIAELSGMNKSTVHRLLQGLAGCGYVVPARQPGSYRLTTKFIAIGQKALSSLNVL    
 5 YIAJ_ECOLI     100.0%  34.1%    SQSLFRGLMLIEILSNYP-NGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNII    
 6 P71977          97.8%  22.0%    IQVIARAAELLRVLQAHP-GGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPYRLGPEITRMATTVRLG--VV    
 7 O33539          97.8%  29.7%    IQSIERGFAVLLAFDAQR-PNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGG--RWSLTPRVLSIGQHYSESHALI    
 8 O67983          97.8%  28.6%    VQSLARGLAVIRCFDNRN-QRRTLSDVARATDLTRATARRFLLTLVELGYVATDGS--AFWLTPRVLELGYSYLSSLSLP    
 9 GYLR_STRCO     100.0%  28.6%    IQSLERAAAMLRLLAGGE-RRLGLSDIASSLGLAKGTAHGILRTLQQEGFVEQDDASGRYQLGAELLRLGTTYLDVHELR    
10 KDGR_ERWCH      98.9%  27.5%    VSSVLKVFGILQALGEE--REIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGAKALQNVDLI    
11 O06806          96.7%  27.5%    IQVLRRAVAALDEIAAEP-GHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSH-GRFALGERLLGFGSVTGAH--IA    
12 KDGR_ECOLI      98.9%  27.5%    VSSVLKVFGILQALGEE--REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLI    
13 YAGI_ECOLI     100.0%  26.4%    IQSVERALQILDLFNEQA-TELKITDISKLMGLSKSTLHSLLKTLQLHGYIDQNPENGKYRLGMKLVERGHFVVGSIDIR    
14 YCSO_BACSU      97.8%  19.8%    NKTVVKSMALLNLFLHK--PSLTLSELVSLTGMPKTSVHRMVSSLEEMGFLSRDAS-GAYSLGLVFLEFGQLVADRLDIR    
15 GYLR_STRGR     100.0%  27.5%    IQSLERAAAMLRLLAGGE-RRLGLSDIASTLGLAKGTAHGILRSLQAEGFVEQEPASGRYQLGAELLALGNSYLDVHELR    
16 O67479          98.9%  22.0%    MKTLEKAFSVLEYLMEK--GEAGVTEISEHLNLSKNNVFRALITFEEHGLVEKDPETEKYKLGVNSVRLGYGYIQKNPLI    
17 O24845          98.9%  23.1%    VPGLVRGLAILQAFNQES-QEMTISEIAEILDVNRCSAFRLIYTLESCGYLRKATQ-KTYALDSKVMELGFNSLSKLSLL    
18 Q52154          97.8%  20.9%    MTSLARGLAVIQAFQERK-RHLTIAQISHRTEIPRAAVRRCLHTLIKLGYATSDGR--TYSLLPKVLTLGHAYLSSTPLA    
19 O88025          98.9%  22.0%    PTAPDRLLAVLAAFDHAH-PALSLTDISRRAGLSLTTAHRLVGALTRWGALERDGAG-VYHVGLRSWEIAALAPRGLALR    
20 O53238          94.5%  22.0%    IGVLDKAVGVLHAVAE---SPCGLAELCDRTDLPRATAYRLAAALEVHRLLGRGQD-GHWRLGPAITELATHVDDP--LL    
21 MHPR_ECOLI     100.0%  28.6%    VRGLTRGLMLLNMLNKLD-GGASVGLLAELSGLHRTTVRRLLETLQEEGYVRRSPSDDSFRLTIKVRQLSEGFRDEQWIS    
22 Q43992          97.8%  22.0%    IAGLAKGLALLEAFGIDR-QRLNVTQVAERTGISRTAARRYLKTLKFLGYLDTDEH--YFWLTHRVLRFSSSYLSSAHLP    
23 O85831         100.0%  26.1%    IQSVEIGVRVLRALMDCPRDGAHLREVAEKSGLSRSQAHRYLLAFVNTGVVEQNVQNGRYALGEFSVRIGMAALARVEPV    
24 YFAX_ECOLI      97.8%  23.1%    VPALTRAIDILNLIARI--GPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQ-ENFCLWTRLVELSGHALSKMDLR    
25 YJHI_ECOLI      97.8%  26.4%    CNSLVRAEKILTHIAWV--GMASYMELLNKFQYPKSSLLNLLNVMVDCGFLIKNKN-GYYSLGIKNYELGCQALHRQNIF    
26 O66964          97.8%  16.5%    IQNVHLALEVLFLLEK---KPYTFEKLQEELRISRQKLQKILTFLLESEWISFDEENKLYRLGIKNFELGVSYLKHLDIK    
   consensus/100%                  ..s..h...hl..h............l.....h...th..hh..h...thh....t...a.l....h.hu..........    
   consensus/90%                   .tsl.+shthlthh.t.....h.htpl.p..thspsshhthl.sh...thl..t.t...atls.t.hthu..h.t...l.    
   consensus/80%                   hpsl.+uhtlLphhtt...tthslsclsphhshs+sssh+hL.sh.t.Ghltts.t.t.atLs.chhplutthhpp..lh    
   consensus/70%                   hpul.+uhtlLphhsp...tthslsclupthsls+soshRhLtsLpp.Galtpssp.ttapLs.chhplGtthlpphtlh    

                     cov    pid 81          . ] 92 
 1 ICLR_SALTY     100.0% 100.0%    AIVHPILRKLME    
 2 YBBU_ECOLI     100.0%  34.1%    SVAGPFMRRLML    
 3 YIAJ_HAEIN     100.0%  30.8%    HVASPYLEQLNL    
 4 O87190         100.0%  29.7%    HVAVPHLEALNL    
 5 YIAJ_ECOLI     100.0%  34.1%    HIAAPHLEALNI    
 6 P71977          97.8%  22.0%    TEMHPFLTELSR    
 7 O33539          97.8%  29.7%    EAAMPRLLEVAE    
 8 O67983          97.8%  28.6%    EVAQPHLERLSH    
 9 GYLR_STRCO     100.0%  28.6%    ARALVWTDDLAR    
10 KDGR_ERWCH      98.9%  27.5%    RSADIQMRELSA    
11 O06806          96.7%  27.5%    AAFRPTVERVAR    
12 KDGR_ECOLI      98.9%  27.5%    RSADIQMRELSR    
13 YAGI_ECOLI     100.0%  26.4%    QKAKGWLTELSR    
14 YCSO_BACSU      97.8%  19.8%    KIAKPVMEELCR    
15 GYLR_STRGR     100.0%  27.5%    ARALVWTDDLAR    
16 O67479          98.9%  22.0%    KLSEPVFKNLRF    
17 O24845          98.9%  23.1%    DLSTPLMKELRD    
18 Q52154          97.8%  20.9%    ISAQPYLDRISD    
19 O88025          98.9%  22.0%    QVAWPYLEDLYE    
20 O53238          94.5%  22.0%    VACAAVLPQLRD    
21 MHPR_ECOLI     100.0%  28.6%    ALAAPLLGDLLR    
22 Q43992          97.8%  22.0%    KVAQSFLNLLCA    
23 O85831         100.0%  26.1%    RIAGDNLASVLE    
24 YFAX_ECOLI      97.8%  23.1%    ELARPRLTQLMD    
25 YJHI_ECOLI      97.8%  26.4%    EVTKRPMQELSL    
26 O66964          97.8%  16.5%    KASKPILEEVAK    
   consensus/100%                  ......h..l..    
   consensus/90%                   t.s...httl..    
   consensus/80%                   thutshhppL..    
   consensus/70%                   phutshhppLtt