cov    pid  1 [        .         .         .         .         :         .         .     ] 76
 1 LACI_ECOLI     100.0% 100.0%    PVTLYDVAEYAGVSYQTVSRVVN---QASHVSAKTREKVEAAMAELNYIPNRVAQQLAGK--QSLLIGVATSSLAL   
 2 LACI_KLEPN     100.0%  47.9%    TATLEDVARRGRVPADGLRRVLN---RPEVVSARTREQVIRAMQALHYVPNRSAQLLAGK--AAPSIGLITASVTL   
 3 ENDR_PAEPO     100.0%  38.9%    VTTMKEVAERAGVSKSTVSQFLQK--RYNYMSENTKKKIEQAIEDLSYIPNEVARSLKQK--KTFIVGVISSTILS   
 4 DEGA_BACSU     100.0%  43.7%    KTTIYDVAKAAGVSITTVSRVIN---NTGRISDKTRQKVMNVMNEMAYTPNVHAAALTGK--RTNMIALVAPDISN   
 5 PURR_HAEIN     100.0%  38.0%    MATIKDVAKMAGVSTTTVSHVIN---KTRFVAKDTEEAVLSAIKQLNYSPSAVARSLKVN--TTKSIGMIVTTSEA   
 6 CCPA_STAXY     100.0%  46.5%    TVTIYDVAREARVSMATVSRVVN---GNQNVKPETRDKVNEVIKKLNYRPNAVARGLASK--RTTTVGVIIPDISN   
 7 MALI_ECOLI     100.0%  42.3%    KITIHDVALAAGVSVSTVSLVLS---GKGRISTATGERVNAAIEELGFVRNRQASALRGG--QSGVIGLIVRDLSA   
 8 GALS_ECOLI     100.0%  49.3%    MITIRDVARQAGVSVATVSRVLN---NSTLVSADTREAVMKAVSELDYRPNANAQALATQ--VSDTIGVVVMDVSD   
 9 CCPA_BACSU     100.0%  45.1%    NITIYDVAREANVSMATVSRVVN---GNPNVKPTTRKKVLEAIERLGYRPNAVARGLASK--KTTTVGVIIPDISS   
10 MALR_STAXY     100.0%  47.9%    MVTIKDIAQAANVSTSTVSRVIS---GNPRISMQTREKVKATMKSFNYQPNRAARTLATK--QSNTIGIIQKSASI   
11 KDGR_BACSU     100.0%  41.7%    HTTIKDVAECAGVSKSTVSRYING--KIDAISPEKVKNIKKAIAELNYRPSKMAQGLKIK--KSKLIGFVVADITN   
12 SCRR_PEDPE     100.0%  50.7%    KPKLNDVAKLAGVSATTVSRVIN---NHGYLSSQTKEKVFAAMRELHYQPNNMARSLQGK--NTRLIGVIFSDISN   
13 CCPA_BACME     100.0%  45.1%    NVTIYDVAREASVSMATVSRVVN---GNPNVKPSTRKKVLETIERLGYRPNAVARGLASK--KTTTVGVIIPDISN   
14 SACR_LACLA     100.0%  46.5%    MIKLEDVANKAGVSVTTVSRVIN---RKGYLSDATISKVEKAMQDLHYIPNAAARSLQGK--SLKLIGLVFPTIKN   
15 PEPR_LACDL      98.6%  45.7%    -VTIYDVAREAKVSMATVSRVVN---GNNNVRKETRDRVMEVIKRLHYQPNAVAQGLASK--RTTTVGLIVPDLTN   
16 CCPA_STRMU     100.0%  46.5%    TITIYDVAREAGVSMATVSRVVN---GNKNVKENTRKKVLEVIDRLDYRPNAVARGLASK--KTTTVGVVIPNIAN   
17 YCJW_ECOLI     100.0%  40.8%    SPTIYDIARVAGVSKSTVSRVLN---KQTNISPEAREKVLRAIEELQYQPNKLARALTSS--GFDAIMVISTRSTK   
18 PURR_ECOLI      98.6%  40.0%    -ATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLKVN--HTKSIGLLATSSEA   
19 RBSR_ECOLI      98.6%  42.9%    -ATMKDVARLAGVSTSTVSHVIN---KDRFVSEAITAKVEAAIKELNYAPSALARSLKLN--QTHTIGMLITASTN   
20 GALR_HAEIN     100.0%  45.1%    MSTIRDVAKLANVSVATVSRVLN---HSLSVSENTRLVVEQAIAQLAYQPNANAQALAVQ--NTDTIGVVVTDVTD   
21 SCRR_STRMU     100.0%  46.5%    VAKLTDVAKLAGVSPTTVSRVIN---RKGYLSEKTITKVQAAMKTLGYKPNNLARSLQGK--SAKLIGLIFPNISH   
22 GNTR_ECOLI     100.0%  42.3%    RPVLQDVADRVGVTKMTVSRFLR---NPEQVSVALRGKIAAALDELGYIPNRAPDILSNA--TSRAIGVLLPSLTN   
23 RBSR_BACSU     100.0%  46.5%    MATIKDVAGAAGVSVATVSRNLN---DNGYVHEETRTRVIAAMAKLNYYPNEVARSLYKR--ESRLIGLLLPDITN   
24 ASCG_ECOLI     100.0%  35.2%    MTTMLEVAKRAGVSKATVSRVLS---GNGYVSQETKDRVFQAVEESGYRPNLLARNLSAK--STQTLGLVVTNTLY   
25 YJGS_ECOLI     100.0%  36.6%    RISLQDIATLAGVTKMTVSRYIR---SPKKVAKETGERIAKIMEEINYIPNRAPGMLLNA--QSYTLGILIPSFQN   
26 SCRR_STAXY      98.6%  35.2%    MKNIADIAKIAGVSKSTVSRYLN----NGSVSLKTQQKLDEIIRENDYQPNQFAQSLRAR--RTNMIGAIIPRMNS   
27 MALI_VIBFU     100.0%  39.4%    KVTITEVAKHAGVSVTTVSMVLG---NKGRISPDTIEKVNASVEALGYIRNRAAANLRSN--SSEIIGLILKDISD   
28 SCRR_SALTY     100.0%  33.8%    RVTIKDIAEQAGVSKATASLVLNGRGKELRVAQETRERVLSIARKHHYQPSIHARSLRNN--RSHTIGLVVPEITN   
29 CSCR_ECOLI     100.0%  35.6%    MASLKDVARLAGVSMMTVSRVMH---NAESVRPATRDRVLQAIQTLNYVPDLSARKMRAQGRKPSTLAVLAQDTAT   
30 RBSR_HAEIN      98.6%  40.0%    -ATMKDIARLAQVSTSTVSHVIN---GSRFVSDEIREKVMRIVAELNYTPSAVARSLKVR--ETKTIGLLVTATNN   
31 SCRR_VIBAL      95.8%  38.0%    MASLHDVARLAGVSKSTVSRVIN---DEYGVKEATKQKVRQAVAECGYVPNQVAKDLKE-----ESSAIIVQDKTG   
32 FRUR_ECOLI      98.6%  39.7%    -MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAG--RTRSIGLVIPDLEN   
33 FRUR_SALTY      98.6%  39.7%    -MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAG--RTRSIGLVIPDLEN   
34 SCRR_KLEPN     100.0%  36.5%    RVTIKDIAELAGVSKATASLVLNGRGKELRVAQETRERVLAIAREQHYQPSIHARSLRDN--RSHTIGLVVPEITN   
35 GALR_ECOLI     100.0%  38.0%    MATIKDVARLAGVSVATVSRVIN---NSPKASEASRLAVHSAMESLSYHPNANARALAQQ--TTETVGLVVGDVSD   
36 RBTR_KLEAE     100.0%  36.5%    KITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSK--KSHVIGMIIPKYDN   
37 RAFR_ECOLI      97.2%  34.8%    --SLKAIATTLGISVTTVSRALG---GFSDVAASTRERVEAEARRRGYRPNTQARRLKTG--KTDAIGLVYPENDV   
38 TRER_SALTY     100.0%  36.6%    RLTIKDIARLSGVGKSTVSRVLN---NESGVSERTRERVEAVMNQHGFSPSRSARAMRGQ--SDKVVAIIVTRLDS   
39 GALR_SALTY     100.0%  38.0%    MATIKDVARLAGVSVATVSRVIN---DSPKASEASRLAVTSAMESLSYHPNANARALAQQ--ATETLGLVVGDVSD   
40 YVDE_BACSU     100.0%  38.0%    MATLSDVAKKANVSKMTVSRVIN---HPETVTDELKKLVHSAMKELNYIPNYAARALVQN--RTQVVKLLILEEMD   
41 TRER_ECOLI     100.0%  36.6%    RLTIKDIARLSGVGKSTVSRVLN---NESGVSQLTRERVEAVMNQHGFSPSRSARAMRGQ--SDKVVAIIVTRLDS   
42 REGA_CLOAB     100.0%  39.4%    ATSIKDVAREAGVSIATVSRVLN---DIDVVNEDTKKKVLDAIKELGYRPNIVARSLKTQ--RTKTIGILLPDISN   
43 MALR_STRCO      95.8%  36.6%    TTRLADIAAQAGVSEATVSRVLN---GKPGVAATTRQSVLAALDVLGYERPVRLR---QR--SEGLVGLITPELEN   
44 MALR_CLOBU      98.6%  37.1%    -MNIKDIARLSGVGVSTVSRVIN---NHPDVKQSTREKVLQIIKDSNYIPNNSARILKQN--NTKNIGVLVKGVFN   
45 REGL_STRLI      95.8%  36.6%    TTRLADIAAQAGVSEATVSRVLN---GKPGVAATTRQSVLAALDVLGYERPVRLR---RR--SAGLVGLVTPELEN   
46 YYAG_BACSU     100.0%  35.2%    MANIKEIARLANVSVSTVSRVLN---HHPYVSEEKRKLVHQVMKELDYTPNRTAIDLIRG--KTHTVGVILPYSDH   
47 CYTR_ECOLI      98.6%  33.3%    AATMKDVALKAKVSTATVSRALMN---PDKVSQATRNRVEKAAREVGYLPQPMGRNVKRN--ESRTILVIVPDICD   
48 MALR_STRPN     100.0%  31.0%    PVTIKDVAKAAGVSPSTVTRVIQ---NKSTISDETKKRVRKAMKDSTTTQTSTLVAWLSS--YTQVIGLVLPDDSD   
49 EBGR_ECOLI      98.6%  29.3%    MATLKDIAIEAGVSLATVSRVLNDD-PTLNVKEETKHRILEIAEKLEYKTSS-ARKLQTGAVNQHHILAIYSYQQE   
   consensus/100%                  ...h.tlA...tls..shp..h........ht......l.t.ht..th...................hhh......   
   consensus/90%                   ..ph.-lAt.utVohtTlShhlp...t...lt.thhttl.thhtp.tY..s..st.h..t..ttt.luhlh.t.t.   
   consensus/80%                   .hslhDlAp.AsVShsTVS+Vls...tt..lp.topppV.tshpphsY.Ps..AptLttp..psphlGllhsphps   
   consensus/70%                   hsolpDlAchAGVShsTVSRVlN...tp.tVutpT+p+VhtshcchsYtPsthApsLtsp..popslGllhsshss